LOCUS BC032376 3335 bp mRNA linear HUM 25-MAR-2004
DEFINITION Homo sapiens PHD finger protein 17, mRNA (cDNA clone MGC:40386
IMAGE:5111727), complete cds.
ACCESSION BC032376
VERSION BC032376.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3335)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3335)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: d Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923608.
FEATURES Location/Qualifiers
source 1..3335
/db_xref="H-InvDB:HIT000041518"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40386 IMAGE:5111727"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3335
/gene="PHF17"
/gene_synonym="FLJ22479"
/gene_synonym="JADE1"
/gene_synonym="KIAA1807"
/db_xref="GeneID:79960"
CDS 116..1645
/gene="PHF17"
/gene_synonym="FLJ22479"
/gene_synonym="JADE1"
/gene_synonym="KIAA1807"
/codon_start=1
/product="PHF17 protein"
/protein_id="AAH32376.1"
/db_xref="GeneID:79960"
/translation="MKRGRLPSSSEDSDDNGSLSTTWSQNSRSQHRRSSCSRHEDRKP
SEVFRTDLITAMKLHDSYQLNPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVS
EEKSLMFIRPKKYIVSSGSEPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEFKE
MGMPELDEYTMERVLEEFEQRCYDNMNHAIETEEGLGIEYDEDVVCDVCQSPDGEDGN
EMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGTK
WVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKFGASIQCSVKNCR
TAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEESLGKGAAQENGAPECS
PRNPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVDFL
YQYWKLKRKVNFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVMIDTDT
L"
misc_feature 728..865
/gene="PHF17"
/gene_synonym="FLJ22479"
/gene_synonym="JADE1"
/gene_synonym="KIAA1807"
/note="PHD; Region: PHD-finger. PHD folds into an
interleaved type of Zn-finger chelating 2 Zn ions in a
similar manner to that of the RING and FYVE domains"
/db_xref="CDD:pfam00628"
BASE COUNT 811 a 761 c 956 g 807 t
ORIGIN
1 ccacgcgtcc gacggcaccc gccagtgggg gtgcctcaac ttccgcgggc gtttaaatag
61 cagcctctct cccctcccac cggtaatagg ctgcctgctg tttcccgggg agatcatgaa
121 acgaggtcgc cttcccagca gcagtgagga ttctgacgac aatggcagcc tgtcaactac
181 ttggtcccag aattcccgat cccagcatag gagaagctcc tgctccagac atgaagatcg
241 aaagccttca gaggtgttta ggacagacct gatcactgcc atgaagttgc atgactccta
301 ccagctgaat ccggatgagt actatgtgtt ggcagatccc tggagacagg aatgggagaa
361 aggggtccag gtgcctgtga gcccggggac catccctcag cctgtggcca gggttgtgtc
421 tgaagagaaa tccctcatgt tcatcaggcc caagaagtac atcgtgtcat caggctctga
481 gcctcccgag ttgggctatg tggacatccg gacgctggct gacagcgtgt gtcgctatga
541 cctcaatgac atggatgctg catggctgga actgaccaat gaagaattta aggagatggg
601 aatgcctgaa ctagatgaat acaccatgga gagggtccta gaggaatttg agcagcgatg
661 ctacgacaat atgaatcatg ccatagagac tgaggaaggc ctggggatcg aatatgatga
721 agatgttgtc tgtgatgtct gccagtctcc tgatggtgag gacggcaatg agatggtgtt
781 ctgtgacaaa tgcaacatct gtgtgcacca ggcctgttat ggaatcctca aggtaccaga
841 gggcagctgg ctgtgccgga catgtgccct gggggttcag ccaaaatgtc tgctgtgtcc
901 gaagaagggt ggagctatga agcccacccg tagcggaacc aagtgggtcc acgttagctg
961 tgctctgtgg atccctgagg tgagcattgg cagcccagag aagatggagc ccatcaccaa
1021 ggtgtcacac attcccagca gccggtgggc gctagtgtgc agcctctgca atgagaagtt
1081 tggggcctct atacagtgct ctgtgaagaa ctgccgcaca gccttccatg tgacctgtgc
1141 ttttgaccgg ggcctggaga tgaagaccat cttagcagag aatgatgaag tcaagttcaa
1201 gtcctattgc ccaaagcaca gctcacatag gaaacccgag gagagtcttg gcaagggggc
1261 tgcacaggag aatggggccc ctgagtgttc cccccggaat ccgctggagc cctttgccag
1321 ccttgagcag aaccgggagg aggcccaccg ggtgagtgtc cgtaagcaga agctgcagca
1381 gttggaggat gagttctaca ccttcgtcaa cctgctggat gttgccaggg ctctgcggct
1441 gcctgaggaa gtagtggatt tcctgtacca gtactggaag ttgaagagga aggtcaactt
1501 caacaagccc ctgatcaccc caaagaaaga tgaagaggac aatctagcca agcgggagca
1561 ggatgtctta tttaggaggc tgcagctgtt cacgcacctg cggcaggacc tggagagggt
1621 aatgattgac actgacacct tatagtgact tagagaagaa gatgcaaaga ggcgaacgct
1681 cgcccagagc aagaaatgat agccagtcat atactctcag acccttgtac acaccacagc
1741 atgaggttgt gttggttaaa aatatttatg ggctggtaaa ctcattgtac atatgtgcaa
1801 aactgctact gagtggggag cttctttgtg gttttttttt tttaaaaaca ctttcccatt
1861 aatctttact gttttgtaag atcaaatggg gtgtgtcttc cccaccccca ttccttcatt
1921 ctagagctag agtgaatgag ccccaagaaa atgacccaag gagttgactc aggatggttt
1981 acagactgat ttagaaaacc agaacggatt tcatttctaa tggagggggc cagagatggg
2041 aaaatttctt gttcagtccg gggaaacaca cctaggtgct ggtgatgggc ttatgaagga
2101 agctaagcac ggctgctcac tggcccccac tttgtttctt gggtaattca caggggaatt
2161 cccagtactg tcatggagca gagcaggcag tgggtgctga tgtgtgtgca tgagctgtat
2221 gtacacatgc atatatctgt tacagaagat actcctggca gtgaggtgct aagtcatcac
2281 tgaggctgtg tgtgtgtgtg tgtgtgtgtg cgcgtgcccg tgtccatcca tgtctctgtt
2341 gtgtgtctgt gtgcgggtat gggtgggatt cctggtggac aggggtgtca gatctgtctg
2401 aggagcccca gtcatgctca gcacgctaca gatgtgttgt ttgtcacact gagattgctg
2461 aatgtcgtgg ctgttggctg ccgagcctca gctgctggca tttccttctg ctgtttgctg
2521 cttttgtgcc tcccccactt tccatcacct ctggagtccc gtctggacgt cccttcctgc
2581 tacaggaata atgaggcgtg ggctgcctcc cgctagggcc tcctgctccc tgtaggtagt
2641 ttctggctga ggcttgctaa ttggggatgc ttcttagagc atcttccaca tcaactcccc
2701 tggctgctgg ctaccgatta aattcattag tgtgaaagag gtgggagtga ggttttctgg
2761 cctgaagcag tctgcactga aaggtaccca agtggcctga aacagtgtag ggaaagacct
2821 gggaaacact ggaccaaaaa agcctgatct catggagacc tgcatggccc tgttagagat
2881 ggcgtagaag tgaaagtctt aaagggagca ttagagatcc ttttaataca cgactgagtg
2941 ccagcttatt tgtgatgccc cttcccagac caggttagga ttcctgggaa ggccgcggat
3001 tccggccctg gaagaggcag gatcctggag cagttttgtg aggcttttgt gctcccatac
3061 gccccctggt ggtgagtgta aagaagactt tgcctctcac aactacatgt atgtgtggca
3121 tttttgttag agatgagaaa aggattgaga aggataaact ggaatcctgg taagaagcct
3181 ttatgccagc ccgacacctg ctgtaattgg ggtgcatgag ctatggagtc agatagttgt
3241 tgggaggggg aggacaagaa gtctattgtt tggactgtgt ttgtctcaca atcaccacaa
3301 aataaaagtg tagaaaatga aaaaaaaaaa aaaaa
//