LOCUS BC031861 2008 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens spermatogenesis and oogenesis specific basic
helix-loop-helix 1, mRNA (cDNA clone MGC:42684 IMAGE:4826967),
complete cds.
ACCESSION BC031861
VERSION BC031861.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2008)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2008)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60302675.
FEATURES Location/Qualifiers
source 1..2008
/db_xref="H-InvDB:HIT000092453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42684 IMAGE:4826967"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2008
/gene="SOHLH1"
/gene_synonym="bA100C15.3"
/gene_synonym="NOHLH"
/gene_synonym="TEB2"
/db_xref="GeneID:402381"
/db_xref="HGNC:HGNC:27845"
/db_xref="MIM:610224"
CDS 73..1059
/gene="SOHLH1"
/gene_synonym="bA100C15.3"
/gene_synonym="NOHLH"
/gene_synonym="TEB2"
/codon_start=1
/product="spermatogenesis and oogenesis specific basic
helix-loop-helix 1"
/protein_id="AAH31861.2"
/db_xref="GeneID:402381"
/db_xref="HGNC:HGNC:27845"
/db_xref="MIM:610224"
/translation="MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKA
PTVAEGPSSCLRRNVISERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLR
LASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDV
KAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPP
FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGSLAMGAAP
LGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGPPA"
BASE COUNT 311 a 566 c 707 g 424 t
ORIGIN
1 gtcgagagcg ggggggcggg gctgcctgcg gaaggggccg tgcgcgtggg gtcgctccgc
61 agctgcgagt tcatggcgtc ccggtgctcc gagccctacc cggaggtctc cagaatcccc
121 accgtcaggg gatgcaacgg ctccctgtct ggtgccctct cctgctgcga ggactcggcc
181 cagggctcgg gcccgcccaa ggcccctacg gtggccgagg gtcccagctc ctgccttcgg
241 cggaacgtga tcagcgagag ggagcgcagg aagcggatgt cgttgagctg tgagcgtctg
301 cgggccctgc tgccccagtt cgatggccgg cgggaggaca tggcctcggt cctggagatg
361 tctgtgcagt tcctgcggct tgccagcgcc ctggggccca gtcaggagca gcacgctatt
421 cttgcttcct ccaaggaaat gtggcactcg ttgcaggagg atgttttaca gttgacgttg
481 tcgagtcaga ttcaagcagg tgtgccagac cctgggacgg gagcgtccag cgggactcga
541 accccagatg tgaaggcgtt tctggaaagt ccttggtccc tggatccagc gtcggccagc
601 ccagagcccg tgccgcacat ccttgcgtcc tccaggcagt gggaccccgc gagctgcacg
661 tccctgggca cggacaagtg tgaggcactg ttggggctgt gccaggtgcg gggtgggctg
721 ccccctttct cagaaccttc cagcctggtg ccgtggcccc caggccggag tcttcctaag
781 gctgtgaggc cacccctgtc ctggcctccg ttctcgcagc agcagacctt gcccgtgatg
841 agcggggagg cccttggctg gctgggccag gctggttccc tggccatggg ggctgcacct
901 ctgggggagc cagccaagga ggaccccatg ctggcgcagg aggccgggtc tgcgttgggg
961 tctgatgtgg acgatgggac gtccttcctg ctgactgctg gtcccagctc gtggccgggt
1021 gagtggggcc ctgggttcag ggctggtccc cctgcgtaag cacctgatat gagctgggga
1081 attgggactc aggcctagcg tgtgtcaggg ggccccaggg tctgtgtctg agcccccgtt
1141 ttctccaccg ttggtgctta gctgttgggc cgtgtctggt attgagcgtt ataggtgata
1201 tgtgagtgtg tgagtgaacg tgatgtggac gagcctgcat gagagctggc ggtgcttgga
1261 gccctgtatt cttccccttg accctgtgtc agcgaggccc ctggtccagc ccgtgctggc
1321 cggcaaaggt gtatggccct gtgacatggc gtgtgtccat tccatttagg atttagtgtt
1381 tgggagcccg ttcctggttc tggtccaaca ggtgtcctgg gtctggggcc accaggtatg
1441 agctcacaca cctcatcaca gcctctgtgc agcggggaca gggcagggca gacggactga
1501 ggtgggagct ctgttcctcc gaccccacct gtctgcctca agctcccaga gcacatgcct
1561 gccctgccga tgtgtcctgt ttgcttccag ggtctctgga gggtcgagga ggcagtggcc
1621 ctgcatgggc cccagctgag agcagtccac tggatgttgg agagccaggc ttcctagggg
1681 accctgagct tggctcccag gagctccagg acagccctct ggagccgtgg ggcctggatg
1741 tggactgtgc aggcctggcc ctgaaggacg aggtggagag catcttccct gacttctttg
1801 cctgctagca gccaggctgt ggagaggagg cgggcggggc cggtggatct ggagccgtgt
1861 gtgtccctgt cgcgtgcttg ggcattttat tttgggtttg ggttgcagct gcaccctaat
1921 ttgagcgagg cttacaggct gtgagaagag gatagtgaat attaaagagg gaaagcagtt
1981 ttcctggagg aagcaaaaaa aaaaaaaa
//