LOCUS BC031839 1978 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens HLA-B associated transcript 5, mRNA (cDNA clone MGC:24847 IMAGE:4931559), complete cds. ACCESSION BC031839 VERSION BC031839.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1978) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1978) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 29 Row: n Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15100150. FEATURES Location/Qualifiers source 1..1978 /db_xref="H-InvDB:HIT000041381_10" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:24847 IMAGE:4931559" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1978 /gene="BAT5" /gene_synonym="D6S82E" /gene_synonym="NG26" /db_xref="GeneID:7920" /db_xref="HGNC:HGNC:13921" /db_xref="MIM:142620" CDS 35..1711 /gene="BAT5" /gene_synonym="D6S82E" /gene_synonym="NG26" /codon_start=1 /product="HLA-B associated transcript 5" /protein_id="AAH31839.1" /db_xref="GeneID:7920" /db_xref="HGNC:HGNC:13921" /db_xref="MIM:142620" /translation="MAKLLSCVLGPRLYKIYRERDSERAPASVPETPTAVTAPHSSSW DTYYQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGT LLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDF HWEEPSSRKESRGGPSRRGVALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGR RMLYPGSVYLLQKALMPVLLQGQARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEP QGQKLVICCEGNAGFYEVGCVSTPLEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVV VQFAIHRLGFQPQDIIIYAWSIGGFTATWAAMSYPDVSAMILDASFDDLVPLALKVMP DSWRGLVTRTVRQHLNLNNAEQLCRYQGPVLLIRRTKDEIITTTVPEDIMSNRGNDLL LKLLQHRYPRVMAEEGLRVVRQWLEASSQLEEASIYSRWEVEEDWCLSVLRSYQAEHG PDFPWSVGEDMSADGRRQLALFLARKHLHNFEATHCTPLPAQNFQMPWHL" BASE COUNT 416 a 562 c 561 g 439 t ORIGIN 1 tgctgctgga agagcagcgg cccgagccgg ggccatggcg aagctgctga gctgcgtcct 61 aggcccccgg ctctacaaaa tctaccggga gagggactct gaaagggccc cggccagcgt 121 ccctgagacg ccaacggcag tcactgcccc ccattccagc tcctgggata cgtactatca 181 gccccgtgcc ctggagaaac atgctgacag catcctggca ctggcttcag tattctggtc 241 catctcttat tactcctctc ccttcgcctt cttctacttg tacaggaaag gttacttgag 301 tttgtccaaa gtggtgccgt tttctcacta tgctgggaca ttgctgctac ttctggcagg 361 tgtggcctgc ctccgaggca ttggccgctg gaccaacccc cagtaccggc agttcatcac 421 catcttggaa gcaacacatc ggaaccagtc ttcagaaaac aagaggcagc ttgccaacta 481 caactttgac ttccggagct ggccagtcga cttccactgg gaagaaccca gcagccggaa 541 ggagtctcga gggggccctt cccgccgggg tgtggccctg cttcgcccag agcccctgca 601 ccgggggaca gcagacaccc tcctcaaccg ggttaagaag ctgccttgtc agatcaccag 661 ctacctggtg gcgcacaccc tagggcgccg gatgttgtat ccaggctctg tgtacctgct 721 gcagaaggcc ctcatgcctg tgctgctgca gggccaggcc cgactggtgg aagagtgtaa 781 tgggcgccgg gcaaagctgc tggcctgtga tggcaatgag attgacacca tgtttgtgga 841 ccggcggggg acagctgagc cccagggaca gaagctggtg atctgctgtg aggggaatgc 901 tgggttttat gaggtgggct gcgtctccac gcccctggaa gctggatatt cagtcctggg 961 ctggaatcat ccaggctttg ctggaagcac gggggtgcca ttcccgcaga atgaggctaa 1021 tgccatggat gtggtggtcc agtttgccat ccaccgcctg ggcttccagc cccaggacat 1081 catcatctac gcctggtcca tcggcggctt cactgccacg tgggcagcca tgtcctaccc 1141 agatgttagt gccatgatcc tggatgcctc ctttgatgac ctggtgccct tggccttgaa 1201 ggtcatgcca gacagctgga ggggcctggt gaccaggacc gtgaggcagc atctcaatct 1261 aaacaacgcg gagcagctgt gcagatacca gggtcctgta ctgctgatcc ggagaaccaa 1321 ggatgagatc atcaccacca cggttcctga ggacatcatg tccaaccgag gcaatgacct 1381 cctgctgaag ctcctgcagc atcggtatcc ccgggtgatg gcagaggagg gtcttcgagt 1441 ggtgaggcag tggttggagg cctcctcaca gctggaggaa gcctcaattt atagccgatg 1501 ggaggtggaa gaggactggt gtctgtctgt cctccgctcc taccaggcag aacacgggcc 1561 cgacttcccc tggagcgtgg gggaggacat gagtgcagat ggacggcggc agctggcttt 1621 gtttctggct cggaagcatc tgcacaactt tgaggccact cactgcaccc cactcccagc 1681 ccagaacttc cagatgccct ggcacctcta gggaccaact gggactcatt atggaagaat 1741 ggggtgagag gagacatgag gaaagaccct cttatttgtg attctctgtg ttcatgttgc 1801 tgtttatagt ttgtggaaag tgggggacca tcccccttct caccactgtt cctcttgcac 1861 gtttcccctc attcatgtgg ctgtacttaa ccttctccaa catacatcct gcattacatg 1921 aatggattat tcctaataat taataaaaag gtattttttc tactaaaaaa aaaaaaaa //