LOCUS BC031062 2872 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 20, mRNA (cDNA
clone MGC:33313 IMAGE:5273709), complete cds.
ACCESSION BC031062
VERSION BC031062.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2872)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2872)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: f Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14251211.
FEATURES Location/Qualifiers
source 1..2872
/db_xref="H-InvDB:HIT000041229"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33313 IMAGE:5273709"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2872
/gene="DDX20"
/gene_synonym="DKFZp434H052"
/gene_synonym="DP103"
/gene_synonym="GEMIN3"
/db_xref="GeneID:11218"
/db_xref="HGNC:HGNC:2743"
/db_xref="MIM:606168"
CDS 20..2494
/gene="DDX20"
/gene_synonym="DKFZp434H052"
/gene_synonym="DP103"
/gene_synonym="GEMIN3"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
/protein_id="AAH31062.1"
/db_xref="GeneID:11218"
/db_xref="HGNC:HGNC:2743"
/db_xref="MIM:606168"
/translation="MAAAFEASGALAAVATAMPAEHVAVQVPAPEPTPGPVRILRTAQ
DLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDL
IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL
ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE
EGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGL
KQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGF
PAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWET
YMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPIPSGLMEECVD
WDVEVKAAVHTYGIASVPNQPLKKQIQKIERTLQIQKAHGDHMASSRNNSVSGLSVKS
KNNTKQKLPVKSHSECGIIEKATSPKELGCDRQSEEQMKNSVQTPVENSTNSQHQVKE
ALPVSLPQIPCLSSFKIHQPYTLTFAELVEDYEHYIKEGLEKPVEIIRHYTGPGDQTV
NPQNGFVRNKVTEQRVPVLASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQL
KDSESTPVDDRISLEQPPNGSDTPNPEKYQESPGIQMKTRLKEGASQRAKQSRRNLPR
RSSFRLQTGAQEDDWYDCHREIRLSFSDTYQDYEEYWRAYYRAWQEYYAAASHSYYWN
AQRHPSWMAAYHMNTIYLQEMMHSNQ"
BASE COUNT 856 a 604 c 650 g 762 t
ORIGIN
1 atctgacggc gcggctacca tggcggcggc atttgaagcc tcgggagcct tagcagcagt
61 ggcgactgct atgccggctg agcatgtggc cgtgcaggtc ccggccccag agccaacacc
121 cgggcctgtg aggatcctgc ggaccgctca ggatctcagc agcccgcgga cccgcacggg
181 ggatgtgctg ttggcggagc cggccgactt cgagtcactg ctgctttcgc ggccggtgct
241 ggaggggctg cgggcggccg gcttcgagag gccctcgccg gtgcagctca aggccatccc
301 gctggggcgc tgcgggctcg atttaattgt tcaagctaaa tctggcaccg ggaaaacctg
361 tgtgttctcc accatagctt tggactctct tgttcttgaa aacttaagta cccagatttt
421 gatcttggct cctacaagag aaattgctgt acagatacat tctgttatta cagccattgg
481 aataaaaatg gaaggcttag agtgtcatgt ctttattgga gggaccccat tatcacaaga
541 caaaaccaga cttaaaaagt gtcatattgc tgttggatct cctggcagaa ttaagcaact
601 catagaactt gactacttga acccaggcag tatacgcctc tttattcttg atgaagcaga
661 taagctttta gaagaaggca gcttccagga gcaaataaat tggatttatt cttccttgcc
721 tgccagtaaa cagatgctgg cagtatcagc tacttatccc gaatttttgg ctaatgcttt
781 gacaaagtac atgagagatc ccacttttgt aagactgaat tccagtgatc caagtctcat
841 aggtttgaag cagtattaca aagttgtcaa ttcataccct ttggcacata aggtttttga
901 ggaaaagact cagcatttac aggaactgtt cagcagaatt ccatttaatc aagctttagt
961 cttttctaat ttgcacagca gagcacaaca tttggctgat atcctttctt ctaaaggctt
1021 tcctgctgag tgcatttcag gcaatatgaa tcagaatcag cgtcttgatg ctatggctaa
1081 actgaagcat tttcattgca gagtcctcat ttccacagat ttgacttctc gtgggattga
1141 tgctgagaag gtgaatctgg ttgtaaatct ggatgtacca ttggattggg agacatacat
1201 gcatcggatt gggagagctg gccgttttgg tacattgggg ctgacagtga cctactgttg
1261 ccggggagag gaagaaaata tgatgatgag aattgcccag aaatgtaata tcaaccttct
1321 ccctttacca gatcccattc cttctggtct gatggaagaa tgtgtggatt gggatgtgga
1381 agttaaagct gctgtgcata catatggtat agcaagtgta cctaaccaac ccttaaaaaa
1441 gcaaattcag aaaatagaga gaacccttca aattcagaaa gctcatggtg accacatggc
1501 ttcctctaga aataattctg tatctggact atcagtcaaa tcaaaaaata ataccaaaca
1561 aaagcttcct gtgaaaagcc actcagaatg tggaatcata gaaaaagcaa cgtcaccaaa
1621 agaactgggc tgtgacaggc aatccgaaga gcaaatgaag aattctgttc agactcccgt
1681 tgaaaactcc accaacagtc agcaccaggt caaagaagct ttacctgtgt cactccccca
1741 gattccttgt ctgtcttcct ttaaaatcca tcagccatac acgttgactt ttgctgaatt
1801 ggtagaggat tatgaacatt atattaaaga ggggttagag aaacctgtgg aaatcatcag
1861 gcactacaca ggccctgggg atcagactgt gaatcctcaa aatggttttg tgagaaataa
1921 agttactgaa cagagagtcc ctgtattggc aagtagtagc caatctggag actctgagag
1981 tgacagtgat tcttacagct caagaacctc ttcccagagc aaaggaaata agtcatactt
2041 ggaaggctct tctgataatc agctgaaaga ctctgaatct acgcctgtgg atgatcgtat
2101 ttctttggaa caaccaccaa atggaagtga cacccccaat ccagagaaat atcaagaatc
2161 acctggaatc cagatgaaga caagacttaa agagggggct agccagagag ctaagcagag
2221 ccggagaaac ctacccaggc ggtcttcctt cagattgcag actggagccc aggaagatga
2281 ttggtatgac tgtcataggg aaatacgtct gagtttttct gatacctatc aggattatga
2341 ggagtactgg agagcttact acagggcatg gcaagaatat tatgctgccg cttctcattc
2401 atattattgg aatgctcaga gacatccaag ttggatggca gcttatcaca tgaataccat
2461 ttatctacaa gaaatgatgc atagtaacca gtgattatag gatatacctg agaccatcag
2521 gaactgtcaa caaatgatac ctttggatat ccatcctcct cgacttatag tacagtggtg
2581 tatagtggca tttctgataa acttgaaaag acttgagtct ttccactggg acacatccat
2641 ttttcagatt gttttgattt aggccaggta tattatcttc atttttaaga gtttctttaa
2701 gaaacttcat cagattgttg aaagataatt tttgggacat agagctgaaa gtttcagggt
2761 gccattttct ataagatctt cccaaaagaa acatttaaaa agatgacata taccaccact
2821 tacttaaaaa caataaaagc aatagatttg attagcaaaa aaaaaaaaaa aa
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