LOCUS BC030816 3171 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens sushi, von Willebrand factor type A, EGF and pentraxin
domain containing 1, mRNA (cDNA clone IMAGE:4730700), complete cds.
ACCESSION BC030816
VERSION BC030816.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3171)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3171)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction, Similarity but not identity
to protein
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3171
/db_xref="H-InvDB:HIT000092240"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4730700"
/tissue_type="Placenta"
/clone_lib="NIH_MGC_79"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..3171
/gene="SVEP1"
/gene_synonym="CCP22"
/gene_synonym="POLYDOM"
/gene_synonym="SEL-OB"
/db_xref="GeneID:79987"
/db_xref="HGNC:HGNC:15985"
CDS 338..2944
/gene="SVEP1"
/gene_synonym="CCP22"
/gene_synonym="POLYDOM"
/gene_synonym="SEL-OB"
/codon_start=1
/product="SVEP1 protein"
/protein_id="AAH30816.1"
/db_xref="GeneID:79987"
/db_xref="HGNC:HGNC:15985"
/translation="MWPRLAFCCWGLALVSGWATFQQMSPSRNFSFRLFPETAPGAPG
SIPAPPAPGDEAAGSRVERLGQAFRRRVRLLRELSERLELVFLVDDSSSVGEVNFRSE
LMFVRKLLSDFPVVPTATRVAIVTFSSKNYVVPRVDYISTRRARQHKCALLLQEIPAI
SYRGGGTYTKGAFQQAAQILLHARENSTKVVFLITDGYSNGGDPRPIAASLRDSGVEI
FTFGIWQGNIRELNDMASTPKEEHCYLLHSFEEFEALARRALHEDLPSGSFIQDDMVH
CSYLCDEGKDCCDRMGSCKCGTHTGHFECICEKGYYGKGLQYECTACPSGTYKPEGSP
GGISSCIPCPDENHTSPPGSTSPEDCVCREGYRASGQTCELVHCPALKPPENGYFIQN
TCNNHFNAACGVRCHPGFDLVGSSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHIS
CSTREMLYKTTCLVACDEGYRLEGSDKLTCQGNSQWDGPEPRCVERHCSTFQMPKDVI
ISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQ
INCPKDIEAKTLEQQDSANVTWQIPTAKDNSGEKVSVHVHPAFTPPYLFPIGDVAIVY
TATDLSGNQASCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVHAASWDEPQFSDNSGAE
LVITRSHTQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFIC
TPDNTGVNCTLTCLEGYDFTEGSTDKYYCAYEDGVWKPTYTTEWPDCAKKRFANHGFK
SFEMFYKAARCDDTDLMKKFSEAFETTLGKMVPSFCSDAEDIDCRLEENLTKKYCLEY
NYDYENGFAIGN"
BASE COUNT 834 a 790 c 808 g 739 t
ORIGIN
1 agggagagaa ggagggaagc gggagatttt tcttgactgc cccctttcct tcaaacattt
61 tataggcttc agggagagag aggaggagga gagagggaag aaaaaaagag gagagcgaga
121 ggggtagaga gcgcgcgccg ttccctccgg agttcccgag ctgctgagga gtctggattg
181 tgtctgtccc cagtgtcaga tgaaagggcg ctgaggctct tggccgctgc cccgcgccca
241 gctccgcgca cgcccctctg cgagtccggc cgcccagcgc ctcttcccgc ccgagccgcc
301 gcctgcgctc cggggcagcc gctctgtctc cagcgcgatg tggcctcgcc tggccttttg
361 ttgctggggt ctggcgctcg tttcgggctg ggcgaccttt cagcagatgt ccccgtcgcg
421 caatttcagc ttccgcctct tccccgagac cgcgcccggg gcccccggga gtatccccgc
481 gccgcccgct cctggcgacg aagcggcggg gagcagagtg gagcggctgg gccaggcgtt
541 ccggcgacgc gtgcggctgc tgcgggagct cagcgagcgc ctggagcttg tcttcctggt
601 ggatgattcg tccagcgtgg gcgaagtcaa cttccgcagc gagctcatgt tcgtccgcaa
661 gctgctgtcc gacttccccg tggtgcccac ggccacgcgc gtggccatcg tgaccttctc
721 gtccaagaac tacgtggtgc cgcgcgtcga ttacatctcc acccgccgcg cgcgccagca
781 caagtgcgcg ctgctcctcc aagagatccc tgccatctcc taccgaggtg gcggcaccta
841 caccaagggc gccttccagc aagccgcgca aattcttctt catgctagag aaaactcaac
901 aaaagttgta tttctcatca ctgatggata ttccaatggg ggagacccta gaccaattgc
961 agcgtcactg cgagattcag gagtggagat cttcactttt ggcatatggc aagggaacat
1021 tcgagagctg aatgacatgg cttccacccc aaaggaggag cactgttacc tgctacacag
1081 ttttgaagaa tttgaggctt tagctcgccg ggcattgcat gaagatctac cttctgggag
1141 ttttattcaa gatgatatgg tccactgctc atatctttgt gatgaaggca aggactgctg
1201 tgaccgaatg ggaagctgca aatgtgggac acacacaggc cattttgagt gcatctgtga
1261 aaaggggtat tacgggaaag gtctgcagta tgaatgcaca gcttgcccat cggggacata
1321 caaacctgaa ggctcaccag gaggaatcag cagttgcatt ccatgtcctg atgaaaatca
1381 cacctctcca cctggaagca catcccctga agactgtgtc tgcagagagg gatacagggc
1441 atctggccag acctgtgaac ttgtccactg ccctgccctg aagcctcccg aaaatggtta
1501 ctttatccaa aacacttgca acaaccactt caatgcagcc tgtggggtcc gatgtcaccc
1561 tggatttgat cttgtgggaa gcagcatcat cttatgtcta cccaatggtt tgtggtccgg
1621 ttcagagagc tactgcagag taagaacatg tcctcatctc cgccagccga aacatggcca
1681 catcagctgt tctacaaggg aaatgttata taagacaaca tgtttggttg cctgtgatga
1741 agggtacaga ctagaaggca gtgataagct tacttgtcaa ggaaacagcc agtgggatgg
1801 gccagaaccc cggtgtgtgg agcgccactg ttccaccttt cagatgccca aagatgtcat
1861 catatccccc cacaactgtg gcaagcagcc agccaaattt gggacgatct gctatgtaag
1921 ttgccgccaa gggttcattt tatctggagt caaagaaatg ctgagatgta ccacttctgg
1981 aaaatggaat gtcggagttc aggcagctgt gtgtaaagac gtggaggctc ctcaaatcaa
2041 ctgtcctaag gacatagagg ctaagactct ggaacagcaa gattctgcca atgttacctg
2101 gcagattcca acagctaaag acaactctgg tgaaaaggtg tcagtccacg ttcatccagc
2161 tttcacccca ccttaccttt tcccaattgg agatgttgct atcgtataca cggcaactga
2221 cctatccggc aaccaggcca gctgcatttt ccatatcaag gttattgatg cagaaccacc
2281 tgtcatagac tggtgcagat ctccacctcc cgtccaggtc tcggagaagg tacatgccgc
2341 aagctgggat gagcctcagt tctcagacaa ctcaggggct gaattggtca ttaccagaag
2401 tcatacacaa ggagaccttt tccctcaagg ggagactata gtacagtata cagccactga
2461 cccctcaggc aataacagga catgtgatat ccatattgtc ataaaaggtt ctccctgtga
2521 aattccattc acacctgtaa atggggattt tatatgcact ccagataata ctggagtcaa
2581 ctgtacatta acttgcttgg agggctatga tttcacagaa gggtctactg acaagtatta
2641 ttgtgcttat gaagatggcg tctggaaacc aacatatacc actgaatggc cagactgtgc
2701 caaaaaacgt tttgcaaacc acgggttcaa gtcctttgag atgttctaca aagcagctcg
2761 ttgtgatgac acagatctga tgaagaagtt ttctgaagca tttgagacga ccctgggaaa
2821 aatggtccca tcattttgta gtgatgcaga ggacattgac tgcagactgg aggagaacct
2881 gaccaaaaaa tattgcctag aatataatta tgactatgaa aatggctttg caattggtaa
2941 ttaaattctg tggcatcggt agttggcaag actaatctgc aaaataagaa taattccaga
3001 aaagtgaggc aaactagaaa cattaacttc tattaattta ttcatcaagt attttaggat
3061 ggctaaataa tttgataatg tgctgaaaga tcattaaggt tatatcaaat tttagtaaca
3121 aataaattat ttaaaattaa gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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