LOCUS BC030637 1959 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens chromosome 20 open reading frame 39, mRNA (cDNA clone
MGC:26011 IMAGE:4821088), complete cds.
ACCESSION BC030637
VERSION BC030637.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1959)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1959)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376346.
FEATURES Location/Qualifiers
source 1..1959
/db_xref="H-InvDB:HIT000041079"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26011 IMAGE:4821088"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1959
/gene="C20orf39"
/gene_synonym="FLJ14220"
/db_xref="GeneID:79953"
/db_xref="HGNC:HGNC:15885"
CDS 136..912
/gene="C20orf39"
/gene_synonym="FLJ14220"
/codon_start=1
/product="chromosome 20 open reading frame 39"
/protein_id="AAH30637.1"
/db_xref="GeneID:79953"
/db_xref="HGNC:HGNC:15885"
/translation="MDGIIEQKSMLVHSKISDAGKRNGLINTRNLMAESRDGLVSVYP
APQYQSHRVGASTVPASLDSSRSEPMQQLLDPNTLQQSVESRYRPNIILYSEGVLRSW
GDGVAADCCETTFIEDRSPTKDSLEYPDGKFIDLSADDIKIHTLSYDVEEEEEFQELE
SDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAAFYLSHETNKAVAKGDLHQ
ASTSSRRALFLAVLSITIGTGVYVGVAVALIAYLSKNNHL"
BASE COUNT 472 a 572 c 525 g 390 t
ORIGIN
1 agcggagagt cgcgggcggc cgcttgggcg cacttgccgg gtcaccttgt cccggaggag
61 aaatggcttc cctgaggcaa gtgtaaccta cattcccagc ccaccagcct gacgcccagc
121 cagggagaga gtaccatgga tggcatcatt gaacagaaga gcatgctggt gcacagtaaa
181 atcagtgatg ctggcaagag gaatggttta attaacacca gaaacttgat ggccgagagc
241 agagatggtc tggtgtctgt ttacccagcg ccccagtacc agagccaccg ggtgggggcc
301 agcacagtgc cggccagcct ggacagcagc aggagtgagc cgatgcagca gctgctggac
361 cccaacaccc tgcagcagtc agtggagtcc cgctaccggc ccaacatcat cctctattca
421 gagggcgtgc tgcgctcctg gggggacggt gtggccgccg actgctgcga gacaaccttc
481 atcgaggacc ggtcgcccac caaagacagc ctcgagtacc cggatgggaa gttcattgac
541 ctctcagctg atgacataaa aatccacacc ctgtcctacg atgtggagga ggaggaggag
601 ttccaggagc tggagagcga ctactcaagc gacacagaga gtgaggacaa tttcctcatg
661 atgcccccgc gggaccacct gggcctcagt gtcttctcca tgctctgctg cttctggcct
721 ctgggcatcg cagccttcta cttgtcccat gagaccaaca aagccgtggc caagggggac
781 ttgcaccagg ccagcaccag ctcccggcgg gccctattcc tggcagtgct gtccatcacc
841 attgggactg gcgtctatgt gggcgtggcc gtggccctca tcgcctacct ctccaagaac
901 aaccacctgt gagcttcctg cgaatggagg gggagcaccc ggggccaggt ctgtgtggac
961 gtggaggaag caggcatacc gcatgatgct gtacagtaca aatgattgcc aaatgatgcc
1021 acgaagccct gggatttcct acccatggat ttattttgtt tttatccttt aatttcatgt
1081 tcacagcact gtgtagagca ccagacagac gggcactgct aatccttcca aaggaaagct
1141 ccaaagatcc cagcccgcaa ggctgtctct ggatggattc tggtggatga atggcaacgc
1201 ggctctctgc agcctgccag tgcccagagt gccaccgcat tagcaatata caaacagtcc
1261 aaaaaagtgt ttatttttta tggaatacgg tgcaataggc agaggacaag ggacacatca
1321 ctcttctgtc tgtggccctg ctggagtcct ttgtgccccc cggagtccac acgccttccc
1381 tgcaagacga gaatggggct gggaagaaag aggcaacacc acggctggca ggagccccgc
1441 tgcactgctc tgcagaccca ttggcctgac cctgagaagc agagccagca aagcccggga
1501 cctgcccctc tttctttccc ttcacaccac cccagcctca ggatgtcaag ccacctccgg
1561 aacgtgtcta cactcgacag ctaccccgca gcaatacgca ctcttgggac ctcgctgatc
1621 taggatgggg aggcaggcca ccgcccctcc caagactcct caagaaagag ccccgcggtt
1681 gctccggaaa ctcgaggcac tgcagctatg ggcactgcct cagcctaaag acacaggggc
1741 gcctcccaat caccgcgctg gcggatgctc accccgtcat aagcagaaac tagtgatcct
1801 ggaaatgaga tgggccttac tctgtcgact aaatgaatag ctattttctt gtcatttttt
1861 aaagtgcaac tcttgcttca tgctgcttaa gttaccagat gaatgctgag aaataagtaa
1921 tcacagacat tttaatacca tttcaaaaaa aaaaaaaaa
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