LOCUS BC023611 2387 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens EF-hand domain family, member D2, mRNA (cDNA clone
MGC:23298 IMAGE:4638660), complete cds.
ACCESSION BC023611
VERSION BC023611.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2387)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2387)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC023611.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2387
/db_xref="H-InvDB:HIT000090812"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23298 IMAGE:4638660"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2387
/gene="EFHD2"
/gene_synonym="MGC4342"
/gene_synonym="RP3-467K16.3"
/db_xref="GeneID:79180"
/db_xref="HGNC:HGNC:28670"
CDS 28..750
/gene="EFHD2"
/gene_synonym="MGC4342"
/gene_synonym="RP3-467K16.3"
/codon_start=1
/product="EF-hand domain family, member D2"
/protein_id="AAH23611.1"
/db_xref="GeneID:79180"
/db_xref="HGNC:HGNC:28670"
/translation="MATDELATKLSRRLQMEGEGGGETPEQPGLNGAAAAAAGAPDEA
AEALGSADCELSAKLLRRADLNQGIGEPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFK
QYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFREFLLIFRKA
AAGELQEDSGLCVLARLSEIDVSSEGVKGAKSFFEAKVQAINVSSRFEEEIKAEQEER
KKQAEEMKQRKAAFKELQSTFK"
BASE COUNT 483 a 741 c 716 g 447 t
ORIGIN
1 gccaaggcga gtgccgcgcg ggccaccatg gccacggacg agctggccac caagctgagc
61 cggcggctgc agatggaggg cgagggcggc ggcgagaccc cggagcagcc cgggctgaac
121 ggggcagcgg cggcggcggc gggggcaccc gacgaggcgg ccgaggcgct gggcagcgcg
181 gactgcgagc tgagcgccaa gctgctgcgg cgcgcagacc tcaaccaggg catcggcgag
241 ccccagtcgc ccagccgccg cgtcttcaac ccctacaccg agttcaagga gttctccagg
301 aagcagatca aggacatgga gaagatgttc aagcagtatg atgccgggcg ggacggcttc
361 atcgacctga tggagctaaa actcatgatg gagaaacttg gggcccctca gacccacctg
421 ggcctgaaaa acatgatcaa ggaggtggat gaggactttg acagcaagct gagcttccgg
481 gagttcctcc tgatcttccg caaggcggcg gccggggagc ttcaggagga cagcgggctg
541 tgcgtgctgg cccgcctctc tgagatcgac gtctccagtg agggtgtcaa gggggccaag
601 agcttctttg aggccaaggt ccaggccatc aacgtgtcca gccgcttcga ggaggagatc
661 aaggcagagc aggaggaaag gaagaagcag gcggaggaga tgaagcagcg gaaagcggcc
721 ttcaaggagc tgcagtccac ctttaagtag cgggggctgc agccgaccgc cctgctctgg
781 ccccagtgtg gtgggcgagg gtggcgcatg ggaggccgag cctgaatcct tgcctgtgtc
841 tgacgggacc actactaaaa acctaaaaat atctgtgaat ggagcaagtt caggggtctt
901 atggaggtgg cccggcccct ccccgctccc ttccactctg cacgaggccg ccacaccggc
961 gctggctccc tgcccggccc ggccctccct ggcaatccct gggctctctt gcacccctaa
1021 ctgccccctg cctgctccgg cactgcccca ggcccagctc ctggccctag gtccctccca
1081 gccccatgtg cctgccgcct gccctccaca catccctgtc cccccaaccc gggaacccct
1141 gccctcctcc agcaggccgc accgcccctg gggccccctg ccagcccctt cccaggctgg
1201 gagacggcag aagagataga atcagggctg cccccacaga gtgggaccca aggggctaat
1261 tggaggcacg aggggacccc tccccagggc cttttcctcc tctgcgtctt ccatctactg
1321 aaatgggaga gggggtgggg agcttctgtt ctggtgaagg gacccgggca ggcccccagc
1381 accccatgct gacttggaga accccagatc tctggggccc agccaggcag ggtgtggggg
1441 cagctgtgcc aatctacctc acaggcccac cccctgccgg gcatgccgtg ggatcatggg
1501 cagggaaggc tctgggggtc ggagacaccg ctgcttagca cccccagcca gaacaccctg
1561 agggtctcgg ggctctggag agagtggggc gggaggaaga attggcacct tcctagggaa
1621 ggagacgagc gcttcgcctt gattctccga gaagcctccg agaagtgctt taagtgtgtt
1681 tgcatgcgcc aggcggtggg cagcgggggc ctgtccagcc ctctcccgcc atccttcccc
1741 aagtgacgtc cactgccttg tcaccagcga cctgcctgtc atgcccaccc cctgaggaag
1801 catggggacc ctaacaccct ggtgccctgc accagacagg ccgtggtcag gcccaggcca
1861 ccggccgggt tctgccacag cttcccacgt gcttgctgac atgcgtgtgc ctgtgtgtgg
1921 tgtctgttgc tgtgtcgtga aactgtgacc atcactcagt ccaaacaagt gagtggccct
1981 cgaggccaca gttatgcaac tttcagtgtg tgtcataacg acgtcactgc tttttaaact
2041 cgataactct ttattttagt aaaatgccca ggagtcctgg aagctacgcg gacttgcaga
2101 ggttttattt tttggcctta gaatctgcag aaattaggag gcaccgagcc cagcgcagca
2161 gcctcggacc cggattgcgt ttgccttagc ggatatgttt atacagatga atataaaatg
2221 tttttttctt tgggcttttt gcttcttttt tccccccctt ctcaccttcc cttctccccg
2281 accccacccc ccaaaaaagc tacttcttca ttccgtggta cgattatttt ttttaactaa
2341 aggaagataa aattctatat tcttaaaaaa aaaaaaaaaa aaaaaaa
//