LOCUS BC020166 3476 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens lysophosphatidylcholine acyltransferase 1, mRNA (cDNA
clone IMAGE:3343363), partial cds.
ACCESSION BC020166
VERSION BC020166.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3476)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3476)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: k Column: 6.
FEATURES Location/Qualifiers
source 1..3476
/db_xref="H-InvDB:HIT000038738"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3343363"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3476
/gene="LPCAT1"
/gene_synonym="lpcat"
/gene_synonym="PFAAP3"
/db_xref="GeneID:79888"
/db_xref="HGNC:HGNC:25718"
/db_xref="MIM:610472"
CDS <1..1188
/gene="LPCAT1"
/gene_synonym="lpcat"
/gene_synonym="PFAAP3"
/codon_start=1
/product="LPCAT1 protein"
/protein_id="AAH20166.3"
/db_xref="GeneID:79888"
/db_xref="HGNC:HGNC:25718"
/db_xref="MIM:610472"
/translation="DAIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQDSR
RKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPNK
LDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMA
EALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSE
RARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPA
RTLDTIQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKGKITF
ADFHRFAEMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVRK
KLD"
BASE COUNT 832 a 882 c 929 g 833 t
ORIGIN
1 gacgccatcc ctgtgaccat gacgatgtcc tccatcgtga tgaaggcaga gagcagagac
61 atcccgatct ggggaactct gatccagtat atacggcctg tgttcgtgtc ccggtcagac
121 caggattctc gcaggaaaac agtagaagaa atcaagagac gggcgcagtc caacggaaag
181 tggccacaga taatgatttt tccagaagga acttgtacaa acaggacctg cctaattacc
241 ttcaaacctg gtgcattcat ccctggagcg cccgtccagc ctgtggtttt acgatatcca
301 aataaactgg acaccatcac atggacgtgg caaggacctg gagcgctgga aatcctgtgg
361 ctcacgctgt gtcagtttca caaccaagtg gaaatcgagt tccttcctgt gtacagccct
421 tctgaggagg agaagaggaa ccccgcgctg tatgccagca acgtgcggcg agtcatggcc
481 gaggccttgg gtgtctccgt gactgactac acgttcgagg actgccagct ggccctggcg
541 gaaggacagc tccgtctccc cgctgacact tgccttttag aatttgccag gctcgtgcgg
601 ggcctcgggc taaaaccaga aaagcttgaa aaagatctgg acagatactc agaaagagcc
661 aggatgaagg gaggagagaa gataggtatt gcggagtttg ccgcctccct ggaagtcccc
721 gtttctgact tgctggaaga catgttttca ctgttcgacg agagcggcag cggcgaggtg
781 gacctgcgag agtgtgtggt tgccctgtct gtcgtctgcc ggccggcccg gaccctggac
841 accatccagc tggctttcaa gatgtacgga gcgcaagagg acggcagcgt cggcgaaggt
901 gacctgtcct gcatcctcaa gacggccctg ggggtggcag agctcaccgt gaccgaccta
961 ttccgagcca ttgaccaaga ggagaagggg aagatcacat tcgctgactt ccacaggttt
1021 gcagaaatgt accctgcctt cgcagaggaa tacctgtacc cggatcagac acatttcgaa
1081 agctgtgcag agacctcacc tgcgccaatc ccaaacggct tctgtgccga tttcagcccg
1141 gaaaactcag acgctgggcg gaagcctgtt cgcaagaagc tggattagga cccagggttg
1201 cggagagacg cggcccctcc cgcgtggaca tcaccgccat gagcctcttt gcgagtgacc
1261 tctgggctcc gctcctcact cctgctgtac aggcactgtc ttcagcccga gttccagggg
1321 cctcgggggc tgtttgtatc ttgttccttt gtgaagtgtg ttgcagaacc gacgcttact
1381 gtgcgagaat cggagggcgc gcacgcggat cccccgcctg gcctggaccc cgtggggtca
1441 ggttccctgc cgggcggggg gcaccggtgc cgccccgtgt tctcccacgg ggccctggtt
1501 tcgagtctct gtcacagcct cttccggcgg cagcgtgcac cgggcgggcc tccgtgcaca
1561 ctcagcacac gcctgccaca cagcgtgcgc ttgcgtgtca ctctggcacg aaacctgtct
1621 gcctctgtgg atccacagcc tggcagagcc gagccgtcac ctgatttttc agtgtttcta
1681 cctgtgtgct ggagctcatg agtattttat aaactccatt taggtacttc aggaaacatg
1741 cagcattttt taaaaaatga aaattgtttt tctacttcat ttttcctttt agagtcaaag
1801 gatatttatt tataggcctt ttttttttta atatagaatc tgaggctgtt tgggctttga
1861 cttaaatttc catcaggcct ctctccagca ggtaatccct ctccttccgc tgggtcccct
1921 ggggaggtgt gaactcaagg gcctagcccc aaaacacttt ttctgctttt cttaatcctt
1981 ttccagtccc ctcttttttt ataaacgttg gcagtttgat gtttctgttt cggcataacg
2041 taatccattt cactgtagcc taaactccag tccgaggttg gatattgttc aaatgagcag
2101 ggcccgagct ggaagcgcaa ggcagccgcc gccgtgccgc tcctcccttg ccctcaggcc
2161 aggtccctgc tggaagcggc tgcatcttcc tgtcagccct ggtttccatg gtgactggcg
2221 tcacgcagcc acccgagtat ggctgacctt cctgcagaga gaggagccgc agtcttttgc
2281 ttgtggaagg agacgctggg ctgtgcggtg cggagggtga tgaggatgtc tggtgacagc
2341 cgtgcggaca ccactcctct ctgcagcact gcctcccagc gccagggtcg cgggcacatc
2401 ccactgagag cgggggtcct gccccatctt agagtcaaag gcagaggggc ttccaggccc
2461 tggatggggt attttggtgt cacctgaagt ccctctgaca tcaccttgtt tcatcatttt
2521 ttatgacaga attagaaacc catccttcaa gcacaataat catcacagac ttgagtttgc
2581 ttcctaaagc aaaggctccg ggtttgtttg gaaaattttt ttgatttctg aaatgaattg
2641 atttttatat ttggggcatc tctatagaaa gtgaccacca aggccagtaa gtacgggaaa
2701 aaatgtttac taacttcctc agagattcgt gatacgcgtt tctccactga cagacattta
2761 aaaacaacct tcagctccgt ttcaatcaat cacctcgact tgttttttag catggacact
2821 gccagcagga cagacaggga tggagtaaac cgaagtcaat ttcagggctc ttggctgttg
2881 gacacagaag aaatcctagt gcagcctttg gtagctaaca gtcactgatt ttataattgg
2941 agaatgcgta aagattcatt tttcaaggag aagagcctgc aaatggccaa tgaaggaggt
3001 aaataaacta agatattccg agggaaggga cccaggccac ctcccttccg caggtctgca
3061 gatgaagggt tttttgaatg aaatgccact gtgcattttc agaaaaaaaa atctctgata
3121 aacagacttt gaatggatgt ttgttcctcc tgattctctt ttctcttcgt ggcgacttag
3181 agttggcgga tattcggaac tgtgaatgta catagcgttg agttaaaccc cttgtgtgtg
3241 agacaggacg cagcgggccc ctggtggcct gggggccaga cccgtgggca ggtggggcat
3301 gggccctggc ctgcggggac ctgctggggt gtgagggcag agggagggtt gccatgaagg
3361 aacttgggat tttcaatgga ataagtaaaa cataaagtct atacttggga aaaaaaaaaa
3421 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//