LOCUS BC019912 1156 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peptide deformylase (mitochondrial), mRNA (cDNA clone
MGC:30048 IMAGE:4994286), complete cds.
ACCESSION BC019912
VERSION BC019912.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1156)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1156)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: j Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11641242.
FEATURES Location/Qualifiers
source 1..1156
/db_xref="H-InvDB:HIT000038716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:30048 IMAGE:4994286"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1156
/gene="PDF"
/db_xref="GeneID:64146"
/db_xref="HGNC:HGNC:30012"
CDS 2..733
/gene="PDF"
/codon_start=1
/product="peptide deformylase (mitochondrial)"
/protein_id="AAH19912.1"
/db_xref="GeneID:64146"
/db_xref="HGNC:HGNC:30012"
/translation="MARLWGALSLRPLWAAVPWGGAAAVGVRACSSTAAPDGVEGPAL
RRSYWRHLRRLVLGPPEPPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQV
MRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRV
LDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDH
LQGCLFIDKMDSRTFTNVYWMKVND"
BASE COUNT 235 a 322 c 382 g 217 t
ORIGIN
1 catggcccgg ctgtggggcg cgctgagtct tcggccactg tgggcggccg tgccgtgggg
61 cggggcggca gccgtcggtg tccgggcttg cagctccacg gccgccccgg acggcgtcga
121 gggcccggcg ctgcggcgct cctattggcg ccacctgagg cgtctggtgc tgggtcctcc
181 cgaaccgccg ttctcgcacg tgtgccaagt cggggacccg gtgctgcgcg gcgtggcggc
241 cccggtggag cgggcgcagc taggcgggcc cgagctgcag cggctgacgc aacggctggt
301 ccaggtgatg cggcggcggc gctgcgtggg cctaagcgcg ccgcagctgg gggtgccgcg
361 gcaggtgctg gcgctggagc tccccgaggc gctgtgtcgg gagtgcccgc cccgccagcg
421 cgcgctccgc caaatggagc ccttccccct gcgcgtgttc gtgaacccca gcctgcgagt
481 gcttgacagc cgcctggtca cctttcccga gggctgcgag agcgtcgccg gcttcctggc
541 ctgcgtgccc cgcttccagg cggtgcagat ctcagggctg gaccccaatg gagaacaggt
601 ggtgtggcag gcgagcgggt gggcagcccg catcatccag cacgagatgg accacctgca
661 gggctgcctg tttattgaca aaatggacag caggacgttc acaaacgtct attggatgaa
721 ggtgaatgac taaagctttg ctactggggc tgaggattcc ggataccaag acgcaaacac
781 tttcactttg agctgggcaa atcttacttg gcatcaactt ggatggctcg catatgacag
841 gaaactggat tgccaaggca tggcagactg agctggagga agatgtcaga aatgtttgcc
901 ctgaaatcag ttacggacaa aatgttggct acaacttgag gagaaaaatc acccccaaag
961 gagtggacat ttcctaacaa ttctgtatgg aggaaggtgg ggtaattgca ttcgtctgca
1021 gtagacacga gttcctcgga cctgtataat ctcccaaagc caaggtttgg tattaatgta
1081 gtccccaaat acctgaaagc tgtctttaaa aatgcaggta agcatgtgac tggcaaaaaa
1141 aaaaaaaaaa aaaaaa
//