LOCUS BC017839 1306 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens caspase 4, apoptosis-related cysteine peptidase, mRNA (cDNA clone MGC:22515 IMAGE:4699374), complete cds. ACCESSION BC017839 VERSION BC017839.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1306) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1306) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 36 Row: p Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15451908. FEATURES Location/Qualifiers source 1..1306 /db_xref="H-InvDB:HIT000038160" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:22515 IMAGE:4699374" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_61" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1306 /gene="CASP4" /gene_synonym="ICE(rel)II" /gene_synonym="ICEREL-II" /gene_synonym="ICH-2" /gene_synonym="Mih1/TX" /gene_synonym="TX" /db_xref="GeneID:837" /db_xref="HGNC:HGNC:1505" /db_xref="MIM:602664" CDS 40..1173 /gene="CASP4" /gene_synonym="ICE(rel)II" /gene_synonym="ICEREL-II" /gene_synonym="ICH-2" /gene_synonym="Mih1/TX" /gene_synonym="TX" /codon_start=1 /product="caspase 4, apoptosis-related cysteine peptidase" /protein_id="AAH17839.1" /db_xref="GeneID:837" /db_xref="HGNC:HGNC:1505" /db_xref="MIM:602664" /translation="MAEGNHRKKPLKVLESLGKDFLTGVLDNLVEQNVLNWKEEEKKK YYDAKTEDKVRVMADSMQEKQRMAGQMLLQTFFNIDQISPNKKAHPNMEAGPPESGES TDALKLCPHEEFLRLCKERAEEIYPIKERNNRTRLALIICNTEFDHLPPRNGADFDIT GMKELLEGLDYSVDVEENLTARDMESALRAFATRPEHKSSDSTFLVLMSHGILEGICG TVHDEKKPDVLLYDTIFQIFNNRNCLSLKDKPKVIIVQACRGANRGELWVRDSPASLE VASSQSSENLEEDAVYKTHVEKDFIAFCSSTPHNVSWRDSTMGSIFITQLITCFQKYS WCCHLEEVFRKVQQSFETPRAKAQMPTIERLSMTRYFYLFPGN" BASE COUNT 430 a 295 c 288 g 293 t ORIGIN 1 cttttccaac gctgtaaaaa aggacagagg ctgttcccta tggcagaagg caaccacaga 61 aaaaagccac ttaaggtgtt ggaatccctg ggcaaagatt tcctcactgg tgttttggat 121 aacttggtgg aacaaaatgt actgaactgg aaggaagagg aaaaaaagaa atattacgat 181 gctaaaactg aagacaaagt tcgggtcatg gcagactcta tgcaagagaa gcaacgtatg 241 gcaggacaaa tgcttcttca aacctttttt aacatagacc aaatatcccc caataaaaaa 301 gctcatccga atatggaggc tggaccacct gagtcaggag aatctacaga tgccctcaag 361 ctttgtcctc atgaagaatt cctgagacta tgtaaagaaa gagctgaaga gatctatcca 421 ataaaggaga gaaacaaccg cacacgcctg gctctcatca tatgcaatac agagtttgac 481 catctgcctc cgaggaatgg agctgacttt gacatcacag ggatgaagga gctacttgag 541 ggtctggact atagtgtaga tgtagaagag aatctgacag ccagggatat ggagtcagcg 601 ctgagggcat ttgctaccag accagagcac aagtcctctg acagcacatt cttggtactc 661 atgtctcatg gcatcctgga gggaatctgc ggaactgtgc atgatgagaa aaaaccagat 721 gtgctgcttt atgacaccat cttccagata ttcaacaacc gcaactgcct cagtctgaag 781 gacaaaccca aggtcatcat tgtccaggcc tgcagaggtg caaaccgtgg ggaactgtgg 841 gtcagagact ctccagcatc cttggaagtg gcctcttcac agtcatctga gaacctggag 901 gaagatgctg tttacaagac ccacgtggag aaggacttca ttgctttctg ctcttcaacg 961 ccacacaacg tgtcctggag agacagcaca atgggctcta tcttcatcac acaactcatc 1021 acatgcttcc agaaatattc ttggtgctgc cacctagagg aagtatttcg gaaggtacag 1081 caatcatttg aaactccaag ggccaaagct caaatgccca ccatagaacg actgtccatg 1141 acaagatatt tctacctctt tcctggcaat tgaaaatgga agccacaagc agcccagccc 1201 tccttaatca acttcaagga gcaccttcat tagtacagct tgcatattta acattttgta 1261 tttcaataaa agtgaggaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //