LOCUS BC017280 2113 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens patatin-like phospholipase domain containing 2, mRNA
(cDNA clone MGC:29650 IMAGE:4875483), complete cds.
ACCESSION BC017280
VERSION BC017280.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2113)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2113)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017280.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147340.
FEATURES Location/Qualifiers
source 1..2113
/db_xref="H-InvDB:HIT000037918"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29650 IMAGE:4875483"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2113
/gene="PNPLA2"
/gene_synonym="1110001C14Rik"
/gene_synonym="ATGL"
/gene_synonym="FP17548"
/gene_synonym="TTS-2.2"
/db_xref="GeneID:57104"
/db_xref="HGNC:HGNC:30802"
/db_xref="MIM:609059"
CDS 203..1717
/gene="PNPLA2"
/gene_synonym="1110001C14Rik"
/gene_synonym="ATGL"
/gene_synonym="FP17548"
/gene_synonym="TTS-2.2"
/codon_start=1
/product="patatin-like phospholipase domain containing 2"
/protein_id="AAH17280.1"
/db_xref="GeneID:57104"
/db_xref="HGNC:HGNC:30802"
/db_xref="MIM:609059"
/translation="MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIY
GASAGALTATALVTGVCLGEAGAKFIEVSKEARKRFLGPLHPSFNLVKIIRSFLLKVL
PADSHEHASGRLGISLTRVSDGENVIISHFNSKDELIQANVCSGFIPVYCGLIPPSLQ
GVRYVDGGISDNLPLYELKNTITVSPFSGESDICPQDSSTNIHELRVTNTSIQFNLRN
LYRLSKALFPPEPLVLREMCKQGYRDGLRFLQRNGLLNRPNPLLALPPARPHGPEDKD
QAVESAQAEDYSQLPGEDHILEHLPARLNEALLEACVEPTDLLTTLSNMLPVRLATAM
MVPYTLPLESALSFTIRLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPSR
LPEQVELRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCT
NVAFPPEALRMRAPADPAPAPADPASPQHQLAGPAPLLSTPAPEARPVIGALGL"
BASE COUNT 387 a 765 c 606 g 355 t
ORIGIN
1 gcggccccag tcagacgcag gcagccccaa agcctgaaca ggcagggcca gacccagctt
61 cttcgcctcc gccagcgggg accccgagct agagccgcag cgggacctgc ccggcccccg
121 gctccagcga gcgagcggcg agcaggcggc tcacagaggc ctggccgccc acggaacccg
181 gggcccggcg gccgccgccg cgatgtttcc ccgcgagaag acgtggaaca tctcgttcgc
241 gggctgcggc ttcctcggcg tctactacgt cggcgtggcc tcctgcctcc gcgagcacgc
301 gcccttcctg gtggccaacg ccacgcacat ctacggcgcc tcggccgggg cgctcacggc
361 cacggcgctg gtcaccgggg tctgcctggg tgaggctggt gccaagttca ttgaggtatc
421 taaagaggcc cggaagcggt tcctgggccc cctgcacccc tccttcaacc tggtaaagat
481 catccgcagt ttcctgctga aggtcctgcc tgctgatagc catgagcatg ccagtgggcg
541 cctgggcatc tccctgaccc gcgtgtcaga cggcgagaat gtcattatat cccacttcaa
601 ctccaaggac gagctcatcc aggccaatgt ctgcagcggt ttcatccccg tgtactgtgg
661 gctcatccct ccctccctcc agggggtgcg ctacgtggat ggtggcattt cagacaacct
721 gccactctat gagcttaaga acaccatcac agtgtccccc ttctcgggcg agagtgacat
781 ctgtccgcag gacagctcca ccaacatcca cgagctgcgg gtcaccaaca ccagcatcca
841 gttcaacctg cgcaacctct accgcctctc caaggccctc ttcccgccgg agcccctggt
901 gctgcgagag atgtgcaagc agggataccg ggatggcctg cgctttctgc agcggaacgg
961 cctcctgaac cggcccaacc ccttgctggc gttgcccccc gcccgccccc acggcccaga
1021 ggacaaggac caggcagtgg agagcgccca agcggaggat tactcgcagc tgccgggaga
1081 agatcacatc ctggagcacc tgcccgcccg gctcaatgag gccctgctgg aggcctgcgt
1141 ggagcccacg gacctgctga ccaccctctc caacatgctg cctgtgcgtc tggccacggc
1201 catgatggtg ccctacacgc tgccgctgga gagcgctctg tccttcacca tccgcttgct
1261 ggagtggctg cccgacgttc ccgaggacat ccggtggatg aaggagcaga cgggcagcat
1321 ctgccagtac ctggtgatgc gcgccaagag gaagctgggc aggcacctgc cctccaggct
1381 gccggagcag gtggagctgc gccgcgtcca gtcgctgccg tccgtgccgc tgtcctgcgc
1441 cgcctacaga gaggcactgc ccggctggat gcgcaacaac ctctcgctgg gggacgcgct
1501 ggccaagtgg gaggagtgcc agcgccagct gctgctcggc ctcttctgca ccaacgtggc
1561 cttcccgccc gaagctctgc gcatgcgcgc acccgccgac ccggctcccg cccccgcgga
1621 cccagcatcc ccgcagcacc agctggccgg gcctgccccc ttgctgagca cccctgctcc
1681 cgaggcccgg cccgtgatcg gggccctggg gctgtgagac cccgaccctc tcgaggaacc
1741 ctgcctgaga cgcctccatt accactgcgc agtgagatga ggggactcac agttgccaag
1801 aggggtcttt gccgtgggcc ccctcgccag ccactcacca gctgcatgca ctgagagggg
1861 aggtttccac acccctcccc tgggccgctg aggccccgcg cacctgtgcc ttaatcttcc
1921 ctcccctgtg ctgcccgagc acctcccccg cccctttact cctgagaact ttgcagctgc
1981 ccttccctcc ccgtttttca tggcctgctg aaatatgtgt gtgaagaatt atttattttc
2041 gccaaagcac atgtaataaa tgctgcagcc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaa
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