LOCUS BC017166 2628 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens glypican 4, mRNA (cDNA clone MGC:9107 IMAGE:3922774), complete cds. ACCESSION BC017166 VERSION BC017166.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2628) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2628) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 15 Row: p Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21614524. FEATURES Location/Qualifiers source 1..2628 /db_xref="H-InvDB:HIT000050670" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:9107 IMAGE:3922774" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2628 /gene="GPC4" /gene_synonym="K-glypican" /db_xref="GeneID:2239" /db_xref="HGNC:HGNC:4452" /db_xref="MIM:300168" CDS 507..2177 /gene="GPC4" /gene_synonym="K-glypican" /codon_start=1 /product="glypican 4" /protein_id="AAH17166.1" /db_xref="GeneID:2239" /db_xref="HGNC:HGNC:4452" /db_xref="MIM:300168" /translation="MARFGLPALLCTLAVLSAALLAAELKSKSCSEVRRLYVSKGFNK NDAPLHEINGDHLKICPQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRY KKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLEEM LNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAA RTFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRG CLANQGDLDFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVS QKVFQGCGPPKPLPAGRISRSISESAFSARFRPHHPEERPTTAAGTSLDRLVTDVKEK LKQAKKFWSSLPSNVCNDERMAAGNGNEDDCWNGKGKSRYLFAVTGNGLANQGNNPEV QVDTSKPDILILRQIMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCP SEFDYNATDHAGKSANEKADSAGVRPGAQAYLLTVFCILFLVMQREWR" BASE COUNT 630 a 706 c 657 g 635 t ORIGIN 1 ctgagaaggg cacagccgcg cggcggaggg cagagtcagc cgagccgagt ccagccggac 61 gagcggacca gcgcagggca gcccaagcag cgcgcagcga acgcccgccg ccgcccacac 121 cctctgcggt ccccgcggcg cctgccaccc ttccctcctt ccccgcgtcc ccgcctcgcc 181 ggccagtcag cttgccgggt tcgctgcccc gcgaaacccc gaggtcacca gcccgcgcct 241 ctgcttccct gggccgcgcg ccgcctccac gccctccttc tcccctggcc cggcgcctgg 301 caccggggac cgttgcctga cgcgaggccc agctctactt ttcgccccgc gtctcctccg 361 cctgctcgcc tcttccacca actccaactc cttctccctc cagctccact cgctagtccc 421 cgactccgcc agccctcggc ccgctgccgt agcgccgctt cccgtccggt cccaaaggtg 481 ggaacgcgtc cgccccggcc cgcaccatgg cacggttcgg cttgcccgcg cttctctgca 541 ccctggcagt gctcagcgcc gcgctgctgg ctgccgagct caagtcgaaa agttgctcgg 601 aagtgcgacg tctttacgtg tccaaaggct tcaacaagaa cgatgccccc ctccacgaga 661 tcaacggtga tcatttgaag atctgtcccc agggttctac ctgctgctct caagagatgg 721 aggagaagta cagcctgcaa agtaaagatg atttcaaaag tgtggtcagc gaacagtgca 781 atcatttgca agctgtcttt gcttcacgtt acaagaagtt tgatgaattc ttcaaagaac 841 tacttgaaaa tgcagagaaa tccctgaatg atatgtttgt gaagacatat ggccatttat 901 acatgcaaaa ttctgagcta tttaaagatc tcttcgtaga gttgaaacgt tactacgtgg 961 tgggaaatgt gaacctggaa gaaatgctaa atgacttctg ggctcgcctc ctggagcgga 1021 tgttccgcct ggtgaactcc cagtaccact ttacagatga gtatctggaa tgtgtgagca 1081 agtatacgga gcagctgaag cccttcggag atgtccctcg caaattgaag ctccaggtta 1141 ctcgtgcttt tgtagcagcc cgtactttcg ctcaaggctt agcggttgcg ggagatgtcg 1201 tgagcaaggt ctccgtggta aaccccacag cccagtgtac ccatgccctg ttgaagatga 1261 tctactgctc ccactgccgg ggtctcgtga ctgtgaagcc atgttacaac tactgctcaa 1321 acatcatgag aggctgtttg gccaaccaag gggatctcga ttttgaatgg aacaatttca 1381 tagatgctat gctgatggtg gcagagaggc tagagggtcc tttcaacatt gaatcggtca 1441 tggatcccat cgatgtgaag atttctgatg ctattatgaa catgcaggat aatagtgttc 1501 aagtgtctca gaaggttttc cagggatgtg gaccccccaa gcccctccca gctggacgaa 1561 tttctcgttc catctctgaa agtgccttca gtgctcgctt cagaccacat caccccgagg 1621 aacgcccaac cacagcagct ggcactagtt tggaccgact ggttactgat gtcaaggaga 1681 aactgaaaca ggccaagaaa ttctggtcct cccttccgag caacgtttgc aacgatgaga 1741 ggatggctgc aggaaacggc aatgaggatg actgttggaa tgggaaaggc aaaagcaggt 1801 acctgtttgc agtgacagga aatggattag ccaaccaggg caacaaccca gaggtccagg 1861 ttgacaccag caaaccagac atactgatcc ttcgtcaaat catggctctt cgagtgatga 1921 ccagcaagat gaagaatgca tacaatggga acgacgtgga cttctttgat atcagtgatg 1981 aaagtagtgg agaaggaagt ggaagtggct gtgagtatca gcagtgccct tcagagtttg 2041 actacaatgc cactgaccat gctgggaaga gtgccaatga gaaagccgac agtgctggtg 2101 tccgtcctgg ggcacaggcc tacctcctca ctgtcttctg catcttgttc ctggttatgc 2161 agagagagtg gagataattc tcaaactctg agaaaaagtg ttcatcaaaa agttaaaagg 2221 caccagttat cacttttcta ccatcctagt gactttgctt tttaaatgaa tggacaacaa 2281 tgtacagttt ttactatgtg gccactggtt taagaagtgc tgactttgtt ttctcattca 2341 gttttgggag gaaaagggac tgtgcattga gttggttcct gctcccccaa accatgttaa 2401 acgtggctaa cagtgtaggt acagaactat agttagttgt gcatttgtga ttttatcact 2461 ctattatttg tttgtatgtt tttttctcat ttcgtttgtg ggtttttttt tccaactgtg 2521 atctcgcctt gtttcttaca agcaaaccag ggtcccttct tggcacgtaa catgtacgta 2581 tttctgaaat attaaatagc tgtacagaaa aaaaaaaaaa aaaaaaaa //