LOCUS BC016863 1558 bp mRNA linear HUM 10-JUL-2017
DEFINITION Homo sapiens sorting nexin 3, mRNA (cDNA clone MGC:17570
IMAGE:3846511), complete cds.
ACCESSION BC016863
VERSION BC016863.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1558)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1558)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 1558)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2017) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Jul 10, 2017 this sequence version replaced BC016863.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: g Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111040.
FEATURES Location/Qualifiers
source 1..1558
/db_xref="H-InvDB:HIT000037730"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17570 IMAGE:3846511"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1558
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
CDS 325..666
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/codon_start=1
/product="SNX3 protein"
/protein_id="AAH16863.1"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
/translation="MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRG
RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKPCLRMTSEARSHGRTW
CAQNDEKLFCD"
BASE COUNT 428 a 356 c 371 g 403 t
ORIGIN
1 tgtttgcgac cccgagtccc atgacaccgc ttctcctcac accccagtcc gcagtgcccc
61 tccccagcct cggccgggcc tcccgggagc cgggcgtggc gttccagcta gtgagccgtt
121 tctcccctgg gctcggaggc ggaagcttga ggggcgcggg gaggagcttc gcgtgcgggg
181 tgaacgcccg ctctacgtgc tcgttctctt cgcgaccgct gcgcgcgagc cccgtgtccc
241 cacggcgggc agcagcggcg gcggcggcgg ctgaacgcgg agggggcgga gggagcccgc
301 ggcggcggca gcagctacag cgaaatggcg gagaccgtgg ctgacacccg gcggctgatc
361 accaagccgc agaacctgaa tgacgcctac ggacccccca gcaacttcct cgagatcgat
421 gtgagcaacc cgcaaacggt gggggtcggc cggggccgct tcaccactta cgaaatcagg
481 gtcaagacaa atcttcctat tttcaagctg aaagaatcta ctgttagaag aagatacagt
541 gactttgaat ggctgcgaag tgaattagaa agagagagca agccctgcct cagaatgaca
601 tcagaggcaa ggagtcatgg aaggacgtgg tgtgctcaga atgatgaaaa gttattttgt
661 gactagaaag tcgtagttcc cccgctccct gggaaagcgt ttttgcgtca gcttcctttt
721 agaggagatg atggaatatt tgatgacaat tttattgagg aaagaaaaca agggctggag
781 cagtttataa acaaggtcgc tggtcatcct ctggcacaga acgaacgttg tcttcacatg
841 tttttacaag atgaaataat agataaaagc tatactccat ctaaaataag acatgcctga
901 aatttggcaa gaaggggcaa aaacgtgact attaatgatt gataagcacc agtgaagaag
961 ttctaacttt tagcatgctg cacagaaact ggtataacat gccttcagta tactaacact
1021 catatgctca gttttgtttt gttttggcag ttgacaagaa gttaatttgc tttagtaaaa
1081 atccctcatt ccagcctttc tatataaata gctctttctt gctgttttaa tgtggtgcac
1141 actatagcct cacaaacctg ttattccagt gtaatctgca gtgtcgtaac taaagttact
1201 ggcttggtct tatttgcaca gtttttgcgt cttgtttgct tcttgcatct gattaactag
1261 aatatttctc tttccccctt ttaatttgtg atgtcacttg accccattta tgtgtaggag
1321 cactacacca ttggtttcca atactgcaca cataagatac atacttgtgt gcagaaagta
1381 tcttcctcca ggcttgtaat acccttcaca tggaagatta atgagggaaa tctttatatt
1441 ctgtataaaa acaaaagcaa atttatatac taaaatcatt tgtctaaaaa tttaagttgt
1501 tttcaaataa aaattaaaat gcatttctga tatgcaaaaa aaaaaaaaaa aaaaaaaa
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