LOCUS BC016617 2536 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vacuolar protein sorting 33 homolog A (S. cerevisiae),
mRNA (cDNA clone MGC:9362 IMAGE:3855313), complete cds.
ACCESSION BC016617
VERSION BC016617.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2536)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2536)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544226.
FEATURES Location/Qualifiers
source 1..2536
/db_xref="H-InvDB:HIT000037600"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9362 IMAGE:3855313"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2536
/gene="VPS33A"
/gene_synonym="FLJ22395"
/gene_synonym="FLJ23187"
/db_xref="GeneID:65082"
/db_xref="HGNC:HGNC:18179"
/db_xref="MIM:610034"
CDS 22..1812
/gene="VPS33A"
/gene_synonym="FLJ22395"
/gene_synonym="FLJ23187"
/codon_start=1
/product="vacuolar protein sorting 33 homolog A (S.
cerevisiae)"
/protein_id="AAH16617.1"
/db_xref="GeneID:65082"
/db_xref="HGNC:HGNC:18179"
/db_xref="MIM:610034"
/translation="MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTG
PFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDR
RGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAF
KECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQN
SIFPVFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDG
GKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEI
KQFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNY
IEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYYKREILQTYGYEHILTLHNLEKA
GLLKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGW
RSIEEVLRILPGPHFEERQPLPTGLQKKRQPGENRVTLIFFLGGVTFAEIAALRFLSQ
LEDGGTEYVIATTKLMNGTSWIEALMEKPF"
BASE COUNT 729 a 560 c 630 g 617 t
ORIGIN
1 ggcagggggt ggtggagcaa gatggcggct catctgtcct acggccgagt gaacctaaac
61 gtgttgcgcg aggcggtgcg tcgcgagctg cgcgagttcc tggacaagtg cgcaggaagc
121 aaggcaatag tttgggatga atacctaact ggaccctttg gcctgattgc acagtattca
181 ctattgaagg aacatgaagt ggaaaaaatg ttcacactta aaggaaatcg tttgccggca
241 gctgatgtga agaatataat tttttttgtc agacccaggc tagagttgat ggatataatc
301 gctgaaaacg tgctcagtga agatagacga ggcccaacga gagattttca tattctgttt
361 gtgccacgcc gtagcctgtt gtgcgaacag cggttgaagg atctgggtgt cttgggatcc
421 tttattcaca gggaggagta cagcttagat ctcattccat tcgatgggga tctcttatcc
481 atggaatcag agggtgcatt caaagagtgc tacctggagg gtgaccagac gagcctgtac
541 cacgcagcca aggggctgat gaccctgcaa gctctgtatg gaacgatccc ccagatcttt
601 gggaaaggag aatgcgctcg gcaagtggcc aatatgatga tcaggatgaa gagagagttt
661 acaggaagcc agaattcaat atttcctgtt tttgataatc tcttgttgct tgatcggaat
721 gtggatttat taacacctct tgccactcag ctgacatatg aaggactcat tgatgaaatt
781 tatggcattc agaacagtta tgtgaaatta cctccagaga aatttgcacc taagaaacag
841 ggcgatggtg gtaaggacct ccccacggaa gcaaagaagc tgcagctgaa ttctgcagag
901 gagctctatg ctgagatccg agataagaac ttcaacgcag ttggctctgt gctcagcaag
961 aaagcaaaga tcatctctgc agcattcgag gaaagacaca atgctaagac cgtgggggag
1021 atcaagcagt ttgtttccca gttgccccac atgcaggcag caaggggctc gcttgcaaac
1081 catacctcaa ttgcagaatt gatcaaagat gtcactactt ctgaagactt ttttgataaa
1141 ttaaccgtgg aacaggagtt tatgtctgga atagacactg ataaggtcaa caattacatt
1201 gaggattgta tcgcccaaaa gcactcgttg atcaaggtgt taagactagt ttgcctccaa
1261 tccgtgtgta atagtgggct caaacaaaaa gttttggatt attacaaaag agagattctc
1321 cagacatacg gctatgagca catattgacc ttacacaacc tggagaaggc cggcctgctg
1381 aaaccgcaga cggggggcag aaacaattac ccaactatac ggaaaacatt acgcctctgg
1441 atggatgatg ttaatgagca aaaccccacg gacatatcgt atgtgtacag tgggtatgcc
1501 ccgctcagtg tgcggctggc ccagctgctt tcccggcctg gctggcggag catcgaggag
1561 gtcctccgca tcctcccagg gccccacttt gaggagcggc agccactgcc cacaggactg
1621 cagaagaaac gtcaaccggg agaaaaccga gtgactctga tatttttcct tgggggcgta
1681 accttcgctg aaattgctgc cctgcgattt ctctcccagt tggaagatgg aggtacagaa
1741 tatgtcattg ccaccactaa actaatgaat ggaaccagtt ggatagaggc tctgatggaa
1801 aaacctttct aggatgttca gaggagactt aacaagtgta ctgcagaata aactacctct
1861 ttgaagaaat tgctgaaagg aagtaaaacc ccatagaaga aacatgggaa tacagaatat
1921 attctggggt cagcttctta aattatacta ctgtttactg ctttctccgt ctcttttgta
1981 ttcccttttt ttttttcctt tgagacggag tcttgctctg tcacccagac tagagtgcag
2041 tggcacggtc tcacctcact gcaacctcca cctcctaggt tcaagcaatt ctcctgcctc
2101 agcctcctga gtagctggga ctacaggcat gcaccaccac acccggctaa tttttgtatt
2161 tttagtagcc atggtgtttc accatgttgg ccaggctggt ctcaaactcc tgacctcagg
2221 tgatccacct gcctcggcct cccacagtgc tgggattaca ggcctgagcc accgtgcctg
2281 gcccctaatc tgctgaagaa agaagaatag aagaaaatca acctgagtaa aagcagcact
2341 ggttttgagt tttctaagct cagggtcttc attagagacc tctggaaata cattaaggat
2401 ggtgggggta gataatccat tcagccagac aaacggggcc agctcttaaa ataagaaagc
2461 tgagactgag gaggtgaaac tgaaaataaa aagagaaagt tcatcctcta aaaaaaaaaa
2521 aaaaaaaaaa aaaaaa
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