LOCUS BC014580 1262 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 3, mRNA (cDNA clone MGC:24246
IMAGE:3932208), complete cds.
ACCESSION BC014580
VERSION BC014580.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1262)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1262)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 31 Row: f Column: 12.
FEATURES Location/Qualifiers
source 1..1262
/db_xref="H-InvDB:HIT000036789"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24246 IMAGE:3932208"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1262
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
CDS 122..610
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/codon_start=1
/product="sorting nexin 3"
/protein_id="AAH14580.1"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
/translation="MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRG
RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLP
FRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR
HA"
BASE COUNT 381 a 264 c 279 g 338 t
ORIGIN
1 ggggcttcgc gaccgctgcg cgcgagcccc gtgtccccac ggcgggcagc agcggcggcg
61 gcggcggctg aacgcggagg gggcggaggg agcccgcggc ggcggcagca gctacagcga
121 aatggcggag accgtggctg acacccggcg gctgatcacc aagccgcaga acctgaatga
181 cgcctacgga ccccccagca acttcctcga gatcgatgtg agcaacccgc aaacggtggg
241 ggtcggccgg ggccgcttca ccacttacga aatcagggtc aagacaaatc ttcctatttt
301 caagctgaaa gaatctactg ttagaagaag atacagtgac tttgaatggc tgcgaagtga
361 attagaaaga gagagcaagg tcgtagttcc cccgctccct gggaaagcgt ttttgcgtca
421 gcttcctttt agaggagatg atggaatatt tgatgacaat tttattgagg aaagaaaaca
481 agggctggag cagtttataa acaaggtcgc tggtcatcct ctggcacaga acgaacgttg
541 tcttcacatg tttttacaag atgaaataat agataaaagc tatactccat ctaaaataag
601 acatgcctga aatttggcaa gaaggggcaa aaacgtgact attaatgatt gataagcacc
661 agtgaagaag ttctaacttt tagcatgctg cacagaaact ggtataacat gccttcagta
721 tactaacact catatgctca gttttgtttt gttttggcag ttgacaagaa gttaatttgc
781 tttagtaaaa atccctcatt ccagcctttc tatataaata gctctttctt gctgttttaa
841 tgtggtgcac actatagcct cacaaacctg ttattccagt gtaatctgca gtgtcgtaac
901 taaagttact ggcttggtct tatttgcaca gtttttgcgt cttgtttgct tcttgcatct
961 gattaactag aatatttctc tttccccctt ttaatttgtg atgtcacttg accccattta
1021 tgtgtaggag cactacacca ttggtttcca atactgcaca cataagatac atacttgtgt
1081 gcagaaagta tcttcctcca ggcttgtaat acccttcaca tggaagatta atgagggaaa
1141 tctttatatt ctgtataaaa acaaaagcaa atttatatac taaaatcatt tgtctaaaaa
1201 tttaagttgt tttcaaataa aaattaaaat gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aa
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