LOCUS BC014179 1341 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens Smith-Magenis syndrome chromosome region, candidate 8,
mRNA (cDNA clone IMAGE:4581215), partial cds.
ACCESSION BC014179
VERSION BC014179.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1341)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1341)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC014179.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21426844.
FEATURES Location/Qualifiers
source 1..1341
/db_xref="H-InvDB:HIT000088307"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4581215"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1341
/gene="SMCR8"
/db_xref="GeneID:140775"
CDS 389..>1341
/gene="SMCR8"
/codon_start=1
/product="SMCR8 protein"
/protein_id="AAH14179.1"
/db_xref="GeneID:140775"
/translation="MISAPDVVAFTKEEEYEEEPYNEPALPEEYSVPLFPFASQGANP
WSKLSGAKFSRDFILISEFSEQVGPQPLLTIPNDTKVFGTFDLNYFSLRIMSVDYQAS
FVGHPPGSAYPKLNFVEDSKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISA
DQHKIMQQFQELSAEFSRASECLKTGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKK
ANDKGFYSSQAIEKANELASVEKSIIEHQDLLKQIRSYPHRKLKGHDLCPGEMEHIQD
QASQASTTSNPDESADTDLYTCRPAFPLKPKKKKKKKKKKK"
BASE COUNT 330 a 359 c 346 g 306 t
ORIGIN
1 cccctgcggc gtcccgtagc ctcgcgttaa gccttgttca gagcgggggc ttttgctgtc
61 gcagtgggtt ccggagagtg caggtgatct cgcagcaggt ttcttgtgct ggccgcgctc
121 gccggacgaa gaagagaagg gcagttgggc ctgcggcctt ggcgttcatg aggcctcaga
181 gagctccgga ggagctacaa ctgtgagggg gctgctagag ttcttctcct cgggtgtgtg
241 agaagcagcc taggaccccg ggttcgggga gtcgcaaaga aggccgtaag ggcttcactt
301 ccttctccgg aggcctgcct tctgcgcgtc gattaacacc gcattctttc ccacttcctc
361 tcaatgtttt cttcatatat ctggaaatat gatcagcgcc cctgacgtag tggccttcac
421 caaagaggaa gagtatgaag aagagcctta caatgagccg gccctgcctg aggagtactc
481 ggtgccgctc ttccccttcg ccagtcaggg tgctaacccc tggtcaaaac tgtccggggc
541 caagttttcg agggacttca ttcttatttc cgagttctct gagcaggtgg gaccccaacc
601 cttactgacc atccccaatg acaccaaagt ttttggcact tttgatctca attacttctc
661 cctgcgtatc atgtctgtgg attaccaggc ttccttcgtg ggccatcctc ctggatctgc
721 ctaccccaag ctgaacttcg tggaggactc caaggtggtg ctgggagatt ctaaggaggg
781 cgcctttgca tacgtgcacc accttaccct atacgacctg gaggcccgtg gcttcgtgag
841 gccgttttgc atggcttata tctctgcaga ccagcataaa atcatgcagc agttccagga
901 gctttcagcc gaattttcca gagcttctga gtgcttgaag actggcaaca ggaaggcatt
961 tgctggggaa cttgaaaaaa agctgaaaga cttggattac accaggacag tgctacacac
1021 agaaacggag atccagaaga aagccaacga caaaggcttt tactcatctc aggcaattga
1081 gaaagccaat gaactggcca gtgtggagaa gtccatcatt gaacatcaag acctgctgaa
1141 gcagatccgc tcataccctc atcggaagtt gaaggggcat gatttgtgtc ctggtgagat
1201 ggagcacatc caggatcagg ccagccaggc atccactacc tctaaccctg atgagtctgc
1261 cgacacagac ctttacacct gcagaccagc attccccctc aaacctaaaa aaaaaaaaaa
1321 aaaaaaaaaa aaaaaaaaaa a
//