LOCUS BC013398 4016 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pumilio homolog 1 (Drosophila), mRNA (cDNA clone
MGC:3890 IMAGE:3528160), complete cds.
ACCESSION BC013398
VERSION BC013398.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4016)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4016)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013398.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 66932908.
FEATURES Location/Qualifiers
source 1..4016
/db_xref="H-InvDB:HIT000036247"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3890 IMAGE:3528160"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4016
/gene="PUM1"
/gene_synonym="HSPUM"
/gene_synonym="KIAA0099"
/gene_synonym="PUMH"
/gene_synonym="PUMH1"
/gene_synonym="PUML1"
/db_xref="GeneID:9698"
/db_xref="HGNC:HGNC:14957"
/db_xref="MIM:607204"
CDS 71..3631
/gene="PUM1"
/gene_synonym="HSPUM"
/gene_synonym="KIAA0099"
/gene_synonym="PUMH"
/gene_synonym="PUMH1"
/gene_synonym="PUML1"
/codon_start=1
/product="pumilio homolog 1 (Drosophila)"
/protein_id="AAH13398.1"
/db_xref="GeneID:9698"
/db_xref="HGNC:HGNC:14957"
/db_xref="MIM:607204"
/translation="MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGS
QAQPQPAANQALAAGTHSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGG
YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSK
DGPKGIFLGDQWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLG
VSMVEYVLSSSPGDSCLRKGGFGPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVM
DKTNGLPVQNGIDADVKDFSRTPGNCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPV
EDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQRPN
ALAVQQLTAAQQQQYALAAAHQPHIGLAPAAFVPNPYIISAAPPGTDPYTAGLAAAAT
LGPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQVLRGGA
SQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQTGALV
VNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLG
TQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSS
PGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSA
SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEF
SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK
LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH
VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH
QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH
ASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP
HIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII"
BASE COUNT 1036 a 1028 c 1009 g 943 t
ORIGIN
1 gagcgccaga gagagaagat cggggggctg aaatccatct tcatcctacc gctccgcccg
61 tgttggtgga atgagcgttg catgtgtctt gaagagaaaa gcagtgcttt ggcaggactc
121 tttcagcccc cacctgaaac atcaccctca agaaccagct aatcccaaca tgcctgttgt
181 tttgacatct ggaacagggt cgcaagcgca gccacaacca gctgcaaatc aggctcttgc
241 agctgggact cactccagcc ctgtcccagg atctatagga gttgcaggcc gttcccagga
301 cgacgctatg gtggactact tctttcagag gcagcatggt gagcagcttg ggggaggagg
361 aagtggagga ggcggctata ataatagcaa acatcgatgg cctactgggg ataacattca
421 tgcagaacat caggtgcgtt ccatggatga actgaatcat gattttcaag cacttgctct
481 ggagggaaga gcgatgggag agcagctctt gccaggtaaa aagttttggg aaacagatga
541 atccagcaaa gatggaccaa aaggaatatt cctgggtgat caatggcgag acagtgcctg
601 gggaacatca gatcattcag tttcccagcc aatcatggtg cagagaagac ctggtcagag
661 tttccatgtg aacagtgagg tcaattctgt actgtcccca cgatcggaga gtgggggact
721 aggcgttagc atggtggagt atgtgttgag ctcatccccg ggcgattcct gtctaagaaa
781 aggaggattt ggcccaaggg atgcagacag tgatgaaaac gacaaaggtg aaaagaagaa
841 caagggtacg tttgatggag ataagctagg agatttgaag gaggagggtg atgtgatgga
901 caagaccaat ggtttaccag tgcagaatgg gattgatgca gacgtcaaag attttagccg
961 tacccctggt aattgccaga actctgctaa tgaagtggat cttctgggtc caaaccagaa
1021 tggttctgag ggcttagccc agctgaccag caccaatggt gccaagcctg tggaggattt
1081 ctccaacatg gagtcccaga gtgtcccctt ggaccccatg gaacatgtgg gcatggagcc
1141 tcttcagttt gattattcag gcacgcaggt acctgtggac tcagcagcag caactgtggg
1201 actttttgac tacaattctc aacaacagct gttccaaaga cctaatgcgc ttgctgtcca
1261 gcagttgaca gctgctcagc agcagcagta tgcactggca gctgctcatc agccgcacat
1321 cggtttagct cccgctgcgt ttgtccccaa tccatacatc atcagcgctg ctcccccagg
1381 gacggacccc tacacagctg gattggctgc agcagcgaca ctaggcccag ctgtggtccc
1441 tcaccagtat tatggagtta ctccctgggg agtctaccct gccagtcttt tccagcagca
1501 agctgccgct gccgctgcag caactaattc agctaatcaa cagaccaccc cacaggctca
1561 gcaaggacag cagcaggttc tccgtggagg agccagccaa cgtcctttga ccccaaacca
1621 gaaccagcag ggacagcaaa cggatcccct tgtggcagct gcagcagtga attctgccct
1681 tgcatttgga caaggtctgg cagcaggcat gccaggttat ccggtgttgg ctcctgctgc
1741 ttactatgac caaactggtg cccttgtagt gaatgcaggc gcgagaaatg gtcttggagc
1801 tcctgttcga cttgtagctc ctgccccagt catcattagt tcctcagctg cacaagcagc
1861 tgttgcagca gccgcagctt cagcaaatgg agcagctggt ggtcttgctg gaacaacaaa
1921 tggaccattt cgccctttag gaacacagca gcctcagccc cagccccagc agcagcccaa
1981 taacaacctg gcatccagtt ctttctacgg caacaactct ctgaacagca attcacagag
2041 cagctccctc ttctcccagg gctctgccca gcctgccaac acatccttgg gattcggaag
2101 tagcagttct ctcggcgcca ccctgggatc cgcccttgga gggtttggaa cagcagttgc
2161 aaactccaac actggcagtg gctcccgccg tgactccctg actggcagca gtgaccttta
2221 taagaggaca tcgagcagct tgacccccat tggacacagt ttttataacg gccttagctt
2281 ttcctcctct cctggacccg tgggcatgcc tctccctagt cagggaccag gacattcaca
2341 gacaccacct ccttccctct cttcacatgg atcctcttca agcttaaacc tgggaggact
2401 cacgaacggc agtggaagat acatctctgc tgctccaggc gctgaagcca agtaccgcag
2461 tgcaagcagc gcctccagcc tcttcagccc gagcagcact cttttctctt cctctcgttt
2521 gcgatatgga atgtctgatg tcatgccttc tggcaggagc aggcttttgg aagattttcg
2581 aaacaaccgg taccccaatt tacaactgcg ggagattgct ggacatataa tggaattttc
2641 ccaagaccag catgggtcca gattcattca gctgaaactg gagcgtgcca caccagctga
2701 gcgccagctt gtcttcaatg aaatcctcca ggctgcctac caactcatgg tggatgtgtt
2761 tggtaattac gtcattcaga agttctttga atttggcagt cttgaacaga agctggcttt
2821 ggcagaacgg attcgaggcc acgtcctgtc attggcacta cagatgtatg gctgccgtgt
2881 tatccagaaa gctcttgagt ttattccttc agaccagcag aatgagatgg ttcgggaact
2941 agatggccat gtcttgaagt gtgtgaaaga tcagaatggc aatcacgtgg ttcagaaatg
3001 cattgaatgt gtacagcccc agtctttgca atttatcatc gatgcgttta agggacaggt
3061 atttgcctta tccacacatc cttatggctg ccgagtgatt cagagaatcc tggagcactg
3121 tctccctgac cagacactcc ctattttaga ggagcttcac cagcacacag agcagcttgt
3181 acaggatcaa tatggaaatt atgtaatcca acatgtactg gagcacggtc gtcctgagga
3241 taaaagcaaa attgtagcag aaatccgagg caatgtactt gtattgagtc agcacaaatt
3301 tgcaagcaat gttgtggaga agtgtgttac tcacgcctca cgtacggagc gcgctgtgct
3361 catcgatgag gtgtgcacca tgaacgacgg tccccacagt gccttataca ccatgatgaa
3421 ggaccagtat gccaactacg tggtccagaa gatgattgac gtggcggagc caggccagcg
3481 gaagatcgtc atgcataaga tccggcccca catcgcaact cttcgtaagt acacctatgg
3541 caagcacatt ctggccaagc tggagaagta ctacatgaag aacggtgttg acttagggcc
3601 catctgtggc ccccctaatg gtatcatctg aggcagtgtc acccgctgtt ccctcattcc
3661 cgctgacctc actggcccac tggcaaatcc aaccagcaac cagaaatgtt ctagtgtaga
3721 gtctgagacg ggcaagtggt tgctccagga ttactccctc ctccaaaaaa ggaatcaaat
3781 ccacgagtgg aaaagccttt gtaaatttaa ttttattaca cataacatgt actatttttt
3841 ttaattgact aattgccctg ctgttttact ggtgtatagg atacttgtac ataggtaacc
3901 aatgtacatg ggaggccaca tattttgttc actgttgtat ctatatttca catgtggaaa
3961 ctttcagggt ggttggttta acaaaaaaaa aaagctttaa aaaaaaaaaa aaaaaa
//