LOCUS BC013365 2691 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens PDX1 C-terminal inhibiting factor 1, mRNA (cDNA clone
MGC:16205 IMAGE:3640928), complete cds.
ACCESSION BC013365
VERSION BC013365.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2691)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2691)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013365.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327716.
FEATURES Location/Qualifiers
source 1..2691
/db_xref="H-InvDB:HIT000036233"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16205 IMAGE:3640928"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2691
/gene="PCIF1"
/db_xref="GeneID:63935"
/db_xref="HGNC:HGNC:16200"
CDS 286..2400
/gene="PCIF1"
/codon_start=1
/product="PDX1 C-terminal inhibiting factor 1"
/protein_id="AAH13365.1"
/db_xref="GeneID:63935"
/db_xref="HGNC:HGNC:16200"
/translation="MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEEL
VHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVE
TPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSP
EDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRE
LCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLS
RIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDY
MDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEV
EAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENNVVCIRYKGEMVKVSRNYFSKLWLL
YRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVS
FECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVS
HFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSGSQH
ICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYRQSGRSHSSGSSSSS
SSEAKDRDSGREQGPSREPHPT"
BASE COUNT 576 a 846 c 750 g 519 t
ORIGIN
1 gatggcggca gcggcgctgg ggagggcgag gcggaggcgg caaaacgggc ggtcgagcag
61 aacgtgtagc cgcgtcccct ccagtccgct ccgggcagct gctgatgcaa ggaatcccct
121 gggctcccgt ccactccact gctgaccagc ccattcgcct gtgctgagtc ttcctgcagg
181 cctttccttg cctctgtggg accctgtggg ggtccatccg gctggagaag aaaagcctct
241 catgctaacg ttgcagaccc cagagggtcc tgtgtgggtg tggagatggc caatgagaat
301 cacggcagcc cccgggagga agcgtccctg ctgagtcact ccccaggtac ctccaatcag
361 agccagccct gttctccaaa gccaatccgc ctggttcagg acctcccaga ggagctggtg
421 catgcaggct gggagaagtg ctggagccgg agggagaatc gtccctacta cttcaaccga
481 ttcaccaacc agtccctgtg ggagatgccc gtgctggggc agcacgatgt gatttcggac
541 cctttggggc tgaatgcgac cccactgccc caagactcaa gcttggtgga aactcccccg
601 gctgagaaca agcccagaaa gcggcagctc tcggaagagc agccaagcgg caatggtgtg
661 aagaagccca agattgaaat cccagtgaca cccacaggcc agtcggtgcc cagctccccc
721 agtatcccag gaaccccaac gctgaagatg tggggtacgt cccctgaaga taaacagcag
781 gcagctctcc tacgacccac tgaggtctac tgggacctgg acatccagac caatgctgtc
841 atcaagcacc gggggccttc agaggtgctg cccccgcatc ccgaagtgga actgctccgc
901 tctcagctca tcctgaagct tcggcagcac tatcgggagc tgtgccagca gcgagagggc
961 attgagcctc cacgggagtc tttcaaccgc tggatgctgg agcgcaaggt ggtagacaaa
1021 ggatctgacc ccctgttgcc cagcaactgt gaaccagtcg tgtcaccttc catgtttcgt
1081 gaaatcatga acgacattcc tatcaggtta tcccgaatca agttccggga ggaagccaag
1141 cgcctgctct ttaaatatgc ggaggccgcc aggcggctca tcgagtccag gagtgcatcc
1201 cctgacagta ggaaggtggt caaatggaat gtggaagaca cctttagctg gcttcggaag
1261 gaccactcag cctccaagga ggactacatg gatcgcctgg agcatctgcg gaggcagtgt
1321 ggcccccacg tctcggccgc agccaaggac tccgtggaag gcatctgcag taagatctac
1381 cacatctccc tggagtacgt caaacggatc cgagagaagc accttgccat cctcaaggaa
1441 aacaacatct cagaggaggt ggaggcccct gaggtggagc cccgcctagt gtactgctac
1501 ccagtccggc tggctgtgtc tgcaccgccc atgcccagcg tggagatgca catggagaac
1561 aacgtggtct gcatccggta taagggagag atggtcaagg tcagccgcaa ctacttcagc
1621 aagctgtggc tcctttaccg ctacagctgc attgatgact ctgcctttga gaggttcctg
1681 ccccgggtct ggtgtcttct ccgacggtac cagatgatgt tcggcgtggg cctctacgag
1741 gggactggcc tgcagggatc gctgcctgtg catgtctttg aggccctcca ccgactcttt
1801 ggcgtcagct tcgagtgctt cgcctcaccc ctcaactgct acttccgcca gtactgttct
1861 gccttccccg acacagacgg ctactttggc tcccgcgggc cctgcctaga ctttgctcca
1921 ctgagtggtt catttgaggc caaccctccc ttctgcgagg agctcatgga tgccatggtc
1981 tctcactttg agagactgct tgagagctca ccggagcccc tgtccttcat cgtgttcatc
2041 cctgagtggc gggaaccccc aacaccagcg ctcacccgca tggagcagag ccgcttcaaa
2101 cgccaccagt tgatcctgcc tgcctttgag catgagtacc gcagtggctc ccagcacatc
2161 tgcaagaagg aggaaatgca ctacaaggcc gtccacaaca cggctgtgct cttcctacag
2221 aacgaccctg gctttgccaa gtgggcgccg acgcctgaac ggctgcagga gctgagtgct
2281 gcctaccggc agtcaggccg cagccacagc tctggttctt cctcatcgtc ctcctcggag
2341 gccaaggacc gggactcggg ccgtgagcag ggtcctagcc gcgagcctca ccccacttaa
2401 catatcctgc ggggaggagg agccccaggg gtgctagtct ggactgctgg gactcgggcc
2461 cctggggcct cagagggacc ccggctgcca ctgacatatg aagattatgg ttctgccagg
2521 gctcccctcc ctgcctgtcc ccaagtcctc acctcaaact ccctccaagt cccatgtata
2581 taggtcctga tgccttccca accccgcccc tcaccctgtt gccaccttgt ttcatttgta
2641 aaaggaaata cagaaacccc cccaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//