LOCUS BC012350 1893 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens sialophorin, mRNA (cDNA clone MGC:20177
IMAGE:4564347), complete cds.
ACCESSION BC012350
VERSION BC012350.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1893)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1893)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254469.
FEATURES Location/Qualifiers
source 1..1893
/db_xref="H-InvDB:HIT000035771"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20177 IMAGE:4564347"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1893
/gene="SPN"
/gene_synonym="CD43"
/gene_synonym="GPL115"
/gene_synonym="LSN"
/db_xref="GeneID:6693"
/db_xref="HGNC:HGNC:11249"
/db_xref="MIM:182160"
CDS 53..1255
/gene="SPN"
/gene_synonym="CD43"
/gene_synonym="GPL115"
/gene_synonym="LSN"
/codon_start=1
/product="sialophorin"
/protein_id="AAH12350.1"
/db_xref="GeneID:6693"
/db_xref="HGNC:HGNC:11249"
/db_xref="MIM:182160"
/translation="MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKM
YTTSITSDPKADSTGDQTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKM
SSVPQETPHATSHPAVPITANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLET
SRGTSGPPLTMATVSLETSKGTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGA
SGPQVSSVKLSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLL
WRRRQKRRTGALVLSRGGKRNGVVDAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGE
GSSRRPTLTTFFGRRKSRQGSLAMEELKSGSGPSLKGEEEPLVASEDGAVDAPAPDEP
EGGDGAAP"
BASE COUNT 414 a 615 c 472 g 392 t
ORIGIN
1 cttccctgcc tccctcaggt cccagctctt gctcctgcct gtttgcctgg aaatggccac
61 gcttctcctt ctccttgggg tgctggtggt aagcccagac gctctgggga gcacaacagc
121 agtgcagaca cccacctccg gagagccttt ggtctctact agcgagcccc tgagctcaaa
181 gatgtacacc acttcaataa caagtgaccc taaggccgac agcactgggg accagacctc
241 agccctacct ccctcaactt ccatcaatga gggatcccct ctttggactt ccattggtgc
301 cagcactggt tcccctttac ctgagccaac aacctaccag gaagtttcca tcaagatgtc
361 atcagtgccc caggaaaccc ctcatgcaac cagtcatcct gctgttccca taacagcaaa
421 ctctctagga tcccacaccg tgacaggtgg aaccataaca acgaactctc cagaaacctc
481 cagtaggacc agtggagccc ctgttaccac ggcagctagc tctctggaga cctccagagg
541 cacctctgga ccccctctta ccatggcaac tgtctctctg gagacttcca aaggcacctc
601 tggaccccct gttaccatgg caactgactc tctggagacc tccactggga ccactggacc
661 ccctgttacc atgacaactg gctctctgga gccctccagc ggggccagtg gaccccaggt
721 ctctagcgta aaactatcta caatgatgtc tccaacgacc tccaccaacg caagcactgt
781 gcccttccgg aacccagatg agaactcacg aggcatgctg ccagtggctg tgcttgtggc
841 cctgctggcg gtcatagtcc tcgtggctct gctcctgctg tggcgccggc ggcagaagcg
901 gcggactggg gccctcgtgc tgagcagagg cggcaagcgt aacggggtgg tggacgcctg
961 ggctgggcca gcccaggtcc ctgaggaggg ggccgtgaca gtgaccgtgg gagggtccgg
1021 gggcgacaag ggctctgggt tccccgatgg ggaggggtct agccgtcggc ccacgctcac
1081 cactttcttt ggcagacgga agtctcgcca gggctccctg gcgatggagg agctgaagtc
1141 tgggtcaggc cccagcctca aaggggagga ggagccactg gtggccagtg aggatggggc
1201 tgtggacgcc ccagctcctg atgagcccga agggggagac ggggctgccc cttaagtgtc
1261 ggtgaatagt gaggctggag gccggaatct cagccagcct ccagcacctt ccctctcacc
1321 atcccactgc cccctcgctc ccatgtttcc acccggcacc ctgatcctca cccgaatctc
1381 cttttttttt ttcttttgag acagagtttc gctttgtcgc ccaggctgga gtgcaatgca
1441 cgatctcagt tcactgcaac ctctgcctcc taagttcagg cgattctcct gcctcagctt
1501 cccgagtaac tgagattaca ggcacccacc accatgccca gctgcttttt tgtatttttg
1561 gtagagatgg ggtttcacca tgttggctag gctggtctca aactcctgac ctcaggtgat
1621 ctacctgcct cagcctccca aagtgctgag attacagaca tgagcctccg cgccttgcct
1681 cctcacccac ctcttcactc tgaatcctca tgaggcttct cagccctgga tttcctgctg
1741 ccatcctcac ccagcaccca caactagcgc ctgggcaggg cagggctggc acctctcaac
1801 gtctgtggac tgaatgaata aaccctcctc atccacccct aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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