LOCUS BC011958 1827 bp mRNA linear HUM 15-SEP-2004
DEFINITION Homo sapiens patatin-like phospholipase domain containing 2, mRNA
(cDNA clone IMAGE:4158010), partial cds.
ACCESSION BC011958
VERSION BC011958.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1827)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1827)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1827
/db_xref="H-InvDB:HIT000087744"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4158010"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1827
/gene="PNPLA2"
/gene_synonym="TTS-2.2"
/db_xref="GeneID:57104"
CDS <1..1106
/gene="PNPLA2"
/gene_synonym="TTS-2.2"
/codon_start=3
/product="PNPLA2 protein"
/protein_id="AAH11958.1"
/db_xref="GeneID:57104"
/translation="LIQANVCSGFIPVYCGLIPPSLQGVRYVDGGISDNLPLYELKNT
ITVSPFSGESDICPQDSSTNIHELRVTNTSIQFNLRNLYRLSKALFPPEPLVLREMCK
QGYRDGLRFLQRNGLLNRPNPLLALPPARPHGPEDKDQAVESAQAEDYSQLPGEDHIL
EHLPARLNEALLEACVEPTDLLTTLSNMLPVRLATAMMVPYTLPLESALSFTIRLLEW
LPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPSRLPEQVELRRVQSLPSVPLSCA
AYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEALRMRAPADPAPAP
ADPASPQHQPAGPAPLLSTPAPEARPVIGALGL"
BASE COUNT 333 a 659 c 497 g 338 t
ORIGIN
1 agctcatcca ggccaatgtc tgcagcggtt tcatccccgt gtactgtggg ctcatccctc
61 cctccctcca gggggtgcgc tacgtggatg gtggcatttc agacaacctg ccactctatg
121 agcttaagaa caccatcaca gtgtccccct tctcgggcga gagtgacatc tgtccgcagg
181 acagctccac caacatccac gagctgcggg tcaccaacac cagcatccag ttcaacctgc
241 gcaacctcta ccgcctctcc aaggccctct tcccgccgga gcccctggtg ctgcgagaga
301 tgtgcaagca gggataccgg gatggcctgc gctttctgca gcggaacggc ctcctgaacc
361 ggcccaaccc cttgctggcg ttgccccccg cccgccccca cggcccagag gacaaggacc
421 aggcagtgga gagcgcccaa gcggaggatt actcgcagct gcccggagaa gatcacatcc
481 tggagcacct gcccgcccgg ctcaatgagg ccctgctgga ggcctgcgtg gagcccacgg
541 acctgctgac caccctctcc aacatgctgc ctgtgcgtct ggccacggcc atgatggtgc
601 cctacacgct gccgctggag agcgctctgt ccttcaccat ccgcttgctg gagtggctgc
661 ccgacgttcc cgaggacatc cggtggatga aggagcagac gggcagcatc tgccagtacc
721 tggtgatgcg cgccaagagg aagctgggca ggcacctgcc ctccaggctg ccggagcagg
781 tggagctgcg ccgcgtccag tcgctgccgt ccgtgccgct gtcctgcgcc gcctacagag
841 aggcactgcc cggctggatg cgcaacaacc tctcgctggg ggacgcgctg gccaagtggg
901 aggagtgcca gcgccagctg ctgctcggcc tcttctgcac caacgtggcc ttcccgcccg
961 aagctctgcg catgcgcgca cccgccgacc cggctcccgc ccccgcggac ccagcatccc
1021 cgcagcacca gccggccggg cctgcccctt tgctgagcac ccctgctccc gaggcccggc
1081 ccgtgatcgg ggccctgggg ctgtgagacc ccgaccctct cgaggaaccc tgcctgagac
1141 gcctccatta ccactgcgca gtgagatgag gggactcaca gttgccaaga ggggtctttg
1201 ccgtgggccc cctcgccagc cactcaccag ctgcactgag aggggaggtt tccacacccc
1261 tcccctgggc cgctgaggcc ccgcgcacct gtgccttaat cttccctccc ctgtgctgcc
1321 cgagcacctc ccccgcccct ttactcctga gaactttgca gctgcccttc cctccccgtt
1381 tttcatggcc tgctgaaata tgtgtgtgaa gaattattta ttttcgccaa agcacatgta
1441 ataaatgctg cagcccagcc tctgcccact ttgtgtgtat gtgaccgcct gcttacttgc
1501 agtgagagcc tggtggccag ggtctggccc taccttggct gaccagcctc tccacagctg
1561 caggccaggt ctcccagcgt cgcactcctg ggcctggcat ttggaacctg ccaggctggc
1621 ctgggaacac ccccctacag gcacatatga acgtactgca ttcctgccga cccccctgtc
1681 taggatgcat ccacaccccc cccaattttg cccagcagcc tcctggctga cccttggcca
1741 cagccttctg agggccaatg gaaatatttg ggaccaagat tcttggtaaa taaaaacgaa
1801 aatgtttgca aaaaaaaaaa aaaaaaa
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