LOCUS BC011682 2052 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cathepsin F, mRNA (cDNA clone MGC:19716
IMAGE:3535532), complete cds.
ACCESSION BC011682
VERSION BC011682.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2052)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2052)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011682.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2052
/db_xref="H-InvDB:HIT000035371"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19716 IMAGE:3535532"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2052
/gene="CTSF"
/gene_synonym="CATSF"
/db_xref="GeneID:8722"
/db_xref="HGNC:HGNC:2531"
/db_xref="MIM:603539"
CDS 85..1539
/gene="CTSF"
/gene_synonym="CATSF"
/codon_start=1
/product="cathepsin F"
/protein_id="AAH11682.1"
/db_xref="GeneID:8722"
/db_xref="HGNC:HGNC:2531"
/db_xref="MIM:603539"
/translation="MAPWLQLLSLLGLLPGAVAAPAQPRAASFQAWGPPSPELLAPTR
FALEMFNRGRAAGTRAVLGLVRGRVRRAGQGSLYSLEATLEEPPCNDPMVCRLPVSKK
TLLCSFQVLDELGRHVLLRKDCGPVDTKVPGAGEPKSAFTQGSAMISSLSQNHPDNRN
ETFSSVISLLNEDPLSQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRA
QKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSVGDLAPPEWD
WRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACM
GGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAA
WLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIK
NSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD"
BASE COUNT 433 a 597 c 607 g 415 t
ORIGIN
1 ctcaggcccc gctggccgcg ggctcggtac ccggtgggtc ggtggagcgt ctgttgggtc
61 cgggccgccg gcttcgccct cgccatggcg ccctggctgc agctcctgtc gctgctgggg
121 ctgctcccgg gcgcagtggc cgcccccgcc cagccccgag ccgccagctt tcaggcctgg
181 gggccgccgt ccccggagct gctggcgccc acccgcttcg cgctggagat gttcaaccgc
241 ggccgggctg cggggacgcg ggccgtgctg ggccttgtgc gcggccgcgt ccgccgggcg
301 ggccaggggt cgctgtactc cctggaggcc accctggagg agccaccctg caacgacccc
361 atggtgtgcc ggctccccgt gtccaagaaa accctgctct gcagcttcca agtcctggat
421 gagctcggaa gacacgtgct gctgcggaag gactgtggcc cagtggacac caaggttcca
481 ggtgctgggg agcccaagtc agccttcact cagggctcag ccatgatttc ttctctgtcc
541 caaaaccatc cagacaacag aaacgagact ttcagctcag tcatttccct gttgaatgag
601 gatcccctgt cccaggactt gcctgtgaag atggcttcaa tcttcaagaa ctttgtcatt
661 acctataacc ggacatatga gtcaaaggaa gaagcccggt ggcgcctgtc cgtctttgtc
721 aataacatgg tgcgagcaca gaagatccag gccctggacc gtggcacagc tcagtatgga
781 gtcaccaagt tcagtgatct cacagaggag gagttccgca ctatctacct gaatactctc
841 ctgagaaaag agcctggcaa caagatgaag caagccaagt ctgtgggtga cctcgcccca
901 cctgaatggg actggaggag taagggggct gtcacaaaag tcaaagacca gggcatgtgt
961 ggctcctgct gggccttctc agtcacaggc aatgtggagg gccagtggtt tctcaaccag
1021 gggaccctgc tctccctctc tgaacaggag ctcttggact gtgacaagat ggacaaggcc
1081 tgcatgggcg gcttgccctc caatgcctac tcggccataa agaatttggg agggctggag
1141 acagaggatg actacagcta ccagggtcac atgcagtcct gcaacttctc agcagagaag
1201 gccaaggtct acatcaatga ctccgtggag ctgagccaga acgagcagaa gctggcagcc
1261 tggctggcca agagaggccc aatctccgtg gccatcaatg cctttggcat gcagttttac
1321 cgccacggga tctcccgccc tctccggccc ctctgcagcc cttggctcat tgaccatgcg
1381 gtgttgcttg tgggctacgg caaccgctct gacgttccct tttgggccat caagaacagc
1441 tggggcactg actggggtga gaagggttac tactacttgc atcgcgggtc cggggcctgt
1501 ggcgtgaaca ccatggccag ctcggcggtg gtggactgaa gaggggcccc cagctcggga
1561 cctggtgctg atcagagtgg ctgctgcccc agcctgacat gtgtccaggc ccctccccgg
1621 gaggtacagc tggcagaggg aaaggcactg ggtacctcag ggtgagcaga gggcactggg
1681 ctggggcaca gcccctgctt ccctgcaccc cattcccacc ctgaagttct gcacctgcac
1741 ctttgttgaa ttgtggtagc ttaggaggat gtcagggtga agggtggtat cttggcagtt
1801 gaagctgggg caagaactct gggcttgggt aatgagcagg aagaaaattt tctgatctta
1861 agcccagctc tgttctgccc ccgctttcct ctgtttgata ctataaattt tctggttccc
1921 ttggatttag ggatagtgtc cccctccatg tccaggaaac ttgtaaccac ccttttctaa
1981 cagcaataaa gaggtgtcct tgtcccgaga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aa
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