LOCUS BC011559 1943 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens SMAD family member 9, mRNA (cDNA clone MGC:20039
IMAGE:4558912), complete cds.
ACCESSION BC011559
VERSION BC011559.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1943)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1943)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: e Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361270.
FEATURES Location/Qualifiers
source 1..1943
/db_xref="H-InvDB:HIT000035289"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20039 IMAGE:4558912"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1943
/gene="SMAD9"
/gene_synonym="SMAD8A"
/gene_synonym="SMAD8B"
/db_xref="GeneID:4093"
/db_xref="HGNC:HGNC:6774"
/db_xref="MIM:603295"
CDS 141..1433
/gene="SMAD9"
/gene_synonym="SMAD8A"
/gene_synonym="SMAD8B"
/codon_start=1
/product="SMAD family member 9"
/protein_id="AAH11559.1"
/db_xref="GeneID:4093"
/db_xref="HGNC:HGNC:6774"
/db_xref="MIM:603295"
/translation="MHSTTPISSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKK
LKKKKGAMDELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQ
SHHELKPLECCEFPFGSKQKEVCINPYHYRRVETPVLPPVLVPRHSEYNPQLSLLAKF
RSASLHSEPLMPHNATYPDSFQQPPCSALPPSPSHAFSQSPCTASYPHSPGSPSEPES
PYQHSDFRPVCYEEPQHWCSVAYYELNNRVGETFQASSRSVLIDGFTDPSNNRNRFCL
GLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECVSDSSIFVQSRNCNYQHGFHPA
TVCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQ
DVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS"
BASE COUNT 500 a 520 c 474 g 449 t
ORIGIN
1 gcaacttgaa ttggtcccag ctgctcccag aagaacgggc gggttggtcc ctatgccacc
61 cctggagagc tactcgccgc ccactttgcc gtgaagggct gtgcggttcc cgtgcgcgcc
121 ggagcctgct gtggcctctt atgcactcca ccacccccat cagctccctc ttctccttca
181 ccagccccgc agtgaagaga ctgctaggct ggaagcaagg agatgaagag gaaaagtggg
241 cagagaaggc agtggactct ctagtgaaga agttaaagaa gaagaaggga gccatggacg
301 agctggagag ggctctcagc tgcccggggc agcccagcaa atgcgtcacg attccccgct
361 ccctggacgg gcggctgcag gtgtcccacc gcaagggcct gccccatgtg atttactgtc
421 gcgtgtggcg ctggccggat ctgcagtccc accacgagct gaagccgctg gagtgctgtg
481 agttcccatt tggctccaag cagaaagaag tgtgcattaa cccttaccac taccgccggg
541 tggagactcc agtactgcct cctgtgctcg tgccaagaca cagtgaatat aacccccagc
601 tcagcctcct ggccaagttc cgcagcgcct ccctgcacag tgagccactc atgccacaca
661 acgccaccta tcctgactct ttccagcagc ctccgtgctc tgcactccct ccctcaccca
721 gccacgcgtt ctcccagtcc ccgtgcacgg ccagctaccc tcactcccca ggaagtcctt
781 ctgagccaga gagtccctat caacactcag actttcgacc agtttgttac gaggagcccc
841 agcactggtg ctcggtcgcc tactatgaac tgaacaaccg agttggggag acattccagg
901 cttcctcccg aagtgtgctc atagatgggt tcaccgaccc ttcaaataac aggaacagat
961 tctgtcttgg acttctttct aatgtaaaca gaaactcaac gatagaaaat accaggagac
1021 atataggaaa gggtgtgcac ttgtactacg tcgggggaga ggtgtatgcc gagtgcgtga
1081 gtgacagcag catctttgtg cagagccgga actgcaacta tcaacacggc ttccacccag
1141 ctaccgtctg caagatcccc agcggctgca gcctcaaggt cttcaacaac cagctcttcg
1201 ctcagctcct ggcccagtca gttcaccacg gctttgaagt cgtgtatgaa ctgaccaaga
1261 tgtgtactat ccggatgagt tttgttaagg gttggggtgc tgagtatcat cgccaggatg
1321 tcaccagcac cccctgctgg attgagattc atcttcatgg gccactgcag tggctggaca
1381 aagttctgac tcagatgggc tctccacata accccatttc ttcagtgtct taacagtcat
1441 gtcttaagct gcatttccat aggatagagg ctattgcagg gagtggcttg tatcatttca
1501 gatttgcaac tgaagtttct aaaaacatgt gtaaatacat agaatgtata ctgttcttat
1561 tttttttaat caccgtttgt tttgtgcttt ctagttaacc tgatgccagt acagtgcaat
1621 tggaaaagca ggactttggt gcctgtgcta taagcagcag attttgtggg aggaaacact
1681 tgagaggcga tattgtcaac agtatttgaa gggtgttagc agaataaaag acagctttag
1741 tcagccgtgt cattataaag catgttgtgt ggcctcacag aaacattgaa actgtttata
1801 cagcaaaagt caggtattag cagcactaaa gcaaatatca ctcagatgaa acaaagcagt
1861 gaaaccctac agtttaaatg atgtcacttt tagtgctgtt ggcaagaaaa aaaaaaaaaa
1921 aaaccaaaaa aaaaaaaaaa aaa
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