LOCUS       BC010671                2731 bp    mRNA    linear   HUM 03-OCT-2003
DEFINITION  Homo sapiens sphingosine kinase 2, mRNA (cDNA clone MGC:16936
            IMAGE:3870258), complete cds.
ACCESSION   BC010671
VERSION     BC010671.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 13 Row: j Column: 11
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 21361698.
FEATURES             Location/Qualifiers
     source          1..2731
                     /db_xref="H-InvDB:HIT000035042"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:16936 IMAGE:3870258"
                     /tissue_type="Eye, retinoblastoma"
                     /clone_lib="NIH_MGC_67"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..2731
                     /gene="SPHK2"
                     /db_xref="GeneID:56848"
                     /db_xref="MIM:607092"
     CDS             195..2051
                     /gene="SPHK2"
                     /codon_start=1
                     /product="SPHK2 protein"
                     /protein_id="AAH10671.1"
                     /db_xref="GeneID:56848"
                     /db_xref="MIM:607092"
                     /translation="MAPPPPPLAASTPLLHGEFGSYPARGPRFALTLTSQALHIQRLR
                     PKPEARPRGGLVPLAEVSGCCTLRSRSPSDSAAYFCIYTYPRGRRGARRRATRTFRAD
                     GAATYEENRAEAQRWATALTCLLRGLPLPGDGEITPDLLPRPPRLLLLVNPFGGRGLA
                     WQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLSLSEWDGIVTVSGDGLLHEVL
                     NGLLDRPDWEEAVKMPVGILPCGSGNALAGAVNQHGGFEPALGLDLLLNCSLLLCRGG
                     GHPLDLLSVTLASGSRCFSFLSVAWGFVSDVDIQSERFRALGSARFTLGTVLGLATLH
                     TYRGRLSYLPATVEPASPTPAHSLPRAKSELTLTPDPAPPMAHSPLHRSVSDLPLPLP
                     QPALASPGSPEPLPILSLNGGGPELAGDWGGAGDAPLSPDPLLSSPPGSPKAALHSPV
                     SEGAPVIPPSSGLPLPTPDARVGASTCGPPDHLLPPLGTPLPPDWVTLEGDFVLMLAI
                     SPSHLGADLVAAPHARFDDGLVHLCWVRSGISRAALLRLFLAMERGSHFSLGCPQLGY
                     AAARAFRLEPLTPRGVLTVDGEQVEYGPLQAQMHPGIGTLLTGPPGCPGREP"
     misc_feature    645..1220
                     /gene="SPHK2"
                     /note="LCB5; Region: Sphingosine kinase and enzymes
                     related to eukaryotic diacylglycerol kinase [Lipid
                     metabolism / General function prediction only]"
                     /db_xref="CDD:COG1597"
     misc_feature    1683..1988
                     /gene="SPHK2"
                     /note="LCB5; Region: Sphingosine kinase and enzymes
                     related to eukaryotic diacylglycerol kinase [Lipid
                     metabolism / General function prediction only]"
                     /db_xref="CDD:COG1597"
BASE COUNT          458 a          936 c          847 g          490 t
ORIGIN      
        1 ggggaacaaa ggtgagcgaa aggaggaggc agaatccggg cagagggcag ggagagggcc
       61 tgtggggaag ggacctcagt cctgctccca cccgctccct ggagagcagg cggccagaca
      121 cccagaggcc agaccaggag ctgaccggga gctggggcca cgggcctagg agcaccctgg
      181 tcagggctaa ggccatggcc ccgcccccac cgccactggc tgccagcacc ccgctcctcc
      241 atggcgagtt tggctcctac ccagcccgag gcccacgctt tgccctcacc cttacatcgc
      301 aggccctgca catacagcgg ctgcgcccca aacctgaagc caggccccgg ggtggcctgg
      361 tcccgttggc cgaggtctca ggctgctgca ccctgcgaag ccgcagcccc tcagactcag
      421 cggcctactt ctgcatctac acctaccctc ggggccggcg cggggcccgg cgcagagcca
      481 ctcgcacctt ccgggcagat ggggccgcca cctacgaaga gaaccgtgcc gaggcccagc
      541 gctgggccac tgccctcacc tgtctgctcc gaggactgcc actgcccggg gatggggaga
      601 tcacccctga cctgctacct cggccgcccc ggttgcttct attggtcaat ccctttgggg
      661 gtcggggcct ggcctggcag tggtgtaaga accacgtgct tcccatgatc tctgaagctg
      721 ggctgtcctt caacctcatc cagacagaac gacagaacca cgcccgggag ctggtccagg
      781 ggctgagcct gagtgagtgg gatggcatcg tcacggtctc gggagacggg ctgctccatg
      841 aggtgctgaa cgggctccta gatcgccctg actgggagga agctgtgaag atgcctgtgg
      901 gcatcctccc ctgcggctcg ggcaacgcgc tggccggagc agtgaaccag cacgggggat
      961 ttgagccagc cctgggcctc gacctgttgc tcaactgctc actgttgctg tgccggggtg
     1021 gtggccaccc actggacctg ctctccgtga cgctggcctc gggctcccgc tgtttctcct
     1081 tcctgtctgt ggcctggggc ttcgtgtcag atgtggatat ccagagcgag cgcttcaggg
     1141 ccttgggcag tgcccgcttc acactgggca cggtgctggg cctcgccaca ctgcacacct
     1201 accgcggacg cctctcctac ctccccgcca ctgtggaacc tgcctcgccc acccctgccc
     1261 atagcctgcc tcgtgccaag tcggagctga ccctaacccc agacccagcc ccgcccatgg
     1321 cccactcacc cctgcatcgt tctgtgtctg acctgcctct tcccctgccc cagcctgccc
     1381 tggcctctcc tggctcgcca gaacccctgc ccatcctgtc cctcaacggt gggggcccag
     1441 agctggctgg ggactggggt ggggctgggg atgctccgct gtccccggac ccactgctgt
     1501 cttcacctcc tggctctccc aaggcagctc tacactcacc cgtctccgaa ggggcccccg
     1561 taattccccc atcctctggg ctcccacttc ccacccctga tgcccgggta ggggcctcca
     1621 cctgcggccc gcccgaccac ctgctgcctc cgctgggcac cccgctgccc ccagactggg
     1681 tgacgctgga gggggacttt gtgctcatgt tggccatctc gcccagccac ctaggcgctg
     1741 acctggtggc agctccgcat gcgcgcttcg acgacggcct ggtgcacctg tgctgggtgc
     1801 gtagcggcat ctcgcgggct gcgctgctgc gccttttctt ggccatggag cgtggtagcc
     1861 acttcagcct gggctgtccg cagctgggct acgccgcggc ccgtgccttc cgcctagagc
     1921 cgctcacacc acgcggcgtg ctcacagtgg acggggagca ggtggagtat gggccgctac
     1981 aggcacagat gcaccctggc atcggtacac tgctcactgg gcctcctggc tgcccggggc
     2041 gggagccctg aaactaaaca agcttggtac ccgccggggg cggggcctac attccaatgg
     2101 ggcggagcct gagctagggg gtgtggcctg gctgctagag ttgtggtggc aggggccctg
     2161 gccccgtctc aggattgcgc tcgctttcat gggaccagac gtgatgctgg aaggtgggcg
     2221 tcgtcacggt taaagagaaa tgggctcgtc ccgagggtag tgcctgatca atgagggcgg
     2281 ggcctggcgt ctgatctggg gccgccctta cggggcaggg ctcagtcctg acgcttgcca
     2341 cctgctccta cccggccagg atggctgagg gcggagtcta ttttacgcgt cgcccaatga
     2401 caggacctgg aatgtactgg ctggggtagg cctcagtgag tcggccggtc agggcccgca
     2461 gcctcgcccc atccactccg gtgcctccat ttagctggcc aatcagccca ggaggggcag
     2521 gttccccggg gccggcgcta ggatttgcac taatgttcct ctccccgcgg gtgggggcgg
     2581 ggaaattcat atcccctgtt cgtctcatgc gcgtcctccg tccccaatct aaaaagcaat
     2641 tgaaaaggtc tatgcaataa aggcagtcgc ttcattcctc tcaaaaaaaa aaaaaaaaaa
     2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//