LOCUS BC010671 2731 bp mRNA linear HUM 03-OCT-2003 DEFINITION Homo sapiens sphingosine kinase 2, mRNA (cDNA clone MGC:16936 IMAGE:3870258), complete cds. ACCESSION BC010671 VERSION BC010671.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2731) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2731) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 13 Row: j Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361698. FEATURES Location/Qualifiers source 1..2731 /db_xref="H-InvDB:HIT000035042" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:16936 IMAGE:3870258" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2731 /gene="SPHK2" /db_xref="GeneID:56848" /db_xref="MIM:607092" CDS 195..2051 /gene="SPHK2" /codon_start=1 /product="SPHK2 protein" /protein_id="AAH10671.1" /db_xref="GeneID:56848" /db_xref="MIM:607092" /translation="MAPPPPPLAASTPLLHGEFGSYPARGPRFALTLTSQALHIQRLR PKPEARPRGGLVPLAEVSGCCTLRSRSPSDSAAYFCIYTYPRGRRGARRRATRTFRAD GAATYEENRAEAQRWATALTCLLRGLPLPGDGEITPDLLPRPPRLLLLVNPFGGRGLA WQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLSLSEWDGIVTVSGDGLLHEVL NGLLDRPDWEEAVKMPVGILPCGSGNALAGAVNQHGGFEPALGLDLLLNCSLLLCRGG GHPLDLLSVTLASGSRCFSFLSVAWGFVSDVDIQSERFRALGSARFTLGTVLGLATLH TYRGRLSYLPATVEPASPTPAHSLPRAKSELTLTPDPAPPMAHSPLHRSVSDLPLPLP QPALASPGSPEPLPILSLNGGGPELAGDWGGAGDAPLSPDPLLSSPPGSPKAALHSPV SEGAPVIPPSSGLPLPTPDARVGASTCGPPDHLLPPLGTPLPPDWVTLEGDFVLMLAI SPSHLGADLVAAPHARFDDGLVHLCWVRSGISRAALLRLFLAMERGSHFSLGCPQLGY AAARAFRLEPLTPRGVLTVDGEQVEYGPLQAQMHPGIGTLLTGPPGCPGREP" misc_feature 645..1220 /gene="SPHK2" /note="LCB5; Region: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]" /db_xref="CDD:COG1597" misc_feature 1683..1988 /gene="SPHK2" /note="LCB5; Region: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]" /db_xref="CDD:COG1597" BASE COUNT 458 a 936 c 847 g 490 t ORIGIN 1 ggggaacaaa ggtgagcgaa aggaggaggc agaatccggg cagagggcag ggagagggcc 61 tgtggggaag ggacctcagt cctgctccca cccgctccct ggagagcagg cggccagaca 121 cccagaggcc agaccaggag ctgaccggga gctggggcca cgggcctagg agcaccctgg 181 tcagggctaa ggccatggcc ccgcccccac cgccactggc tgccagcacc ccgctcctcc 241 atggcgagtt tggctcctac ccagcccgag gcccacgctt tgccctcacc cttacatcgc 301 aggccctgca catacagcgg ctgcgcccca aacctgaagc caggccccgg ggtggcctgg 361 tcccgttggc cgaggtctca ggctgctgca ccctgcgaag ccgcagcccc tcagactcag 421 cggcctactt ctgcatctac acctaccctc ggggccggcg cggggcccgg cgcagagcca 481 ctcgcacctt ccgggcagat ggggccgcca cctacgaaga gaaccgtgcc gaggcccagc 541 gctgggccac tgccctcacc tgtctgctcc gaggactgcc actgcccggg gatggggaga 601 tcacccctga cctgctacct cggccgcccc ggttgcttct attggtcaat ccctttgggg 661 gtcggggcct ggcctggcag tggtgtaaga accacgtgct tcccatgatc tctgaagctg 721 ggctgtcctt caacctcatc cagacagaac gacagaacca cgcccgggag ctggtccagg 781 ggctgagcct gagtgagtgg gatggcatcg tcacggtctc gggagacggg ctgctccatg 841 aggtgctgaa cgggctccta gatcgccctg actgggagga agctgtgaag atgcctgtgg 901 gcatcctccc ctgcggctcg ggcaacgcgc tggccggagc agtgaaccag cacgggggat 961 ttgagccagc cctgggcctc gacctgttgc tcaactgctc actgttgctg tgccggggtg 1021 gtggccaccc actggacctg ctctccgtga cgctggcctc gggctcccgc tgtttctcct 1081 tcctgtctgt ggcctggggc ttcgtgtcag atgtggatat ccagagcgag cgcttcaggg 1141 ccttgggcag tgcccgcttc acactgggca cggtgctggg cctcgccaca ctgcacacct 1201 accgcggacg cctctcctac ctccccgcca ctgtggaacc tgcctcgccc acccctgccc 1261 atagcctgcc tcgtgccaag tcggagctga ccctaacccc agacccagcc ccgcccatgg 1321 cccactcacc cctgcatcgt tctgtgtctg acctgcctct tcccctgccc cagcctgccc 1381 tggcctctcc tggctcgcca gaacccctgc ccatcctgtc cctcaacggt gggggcccag 1441 agctggctgg ggactggggt ggggctgggg atgctccgct gtccccggac ccactgctgt 1501 cttcacctcc tggctctccc aaggcagctc tacactcacc cgtctccgaa ggggcccccg 1561 taattccccc atcctctggg ctcccacttc ccacccctga tgcccgggta ggggcctcca 1621 cctgcggccc gcccgaccac ctgctgcctc cgctgggcac cccgctgccc ccagactggg 1681 tgacgctgga gggggacttt gtgctcatgt tggccatctc gcccagccac ctaggcgctg 1741 acctggtggc agctccgcat gcgcgcttcg acgacggcct ggtgcacctg tgctgggtgc 1801 gtagcggcat ctcgcgggct gcgctgctgc gccttttctt ggccatggag cgtggtagcc 1861 acttcagcct gggctgtccg cagctgggct acgccgcggc ccgtgccttc cgcctagagc 1921 cgctcacacc acgcggcgtg ctcacagtgg acggggagca ggtggagtat gggccgctac 1981 aggcacagat gcaccctggc atcggtacac tgctcactgg gcctcctggc tgcccggggc 2041 gggagccctg aaactaaaca agcttggtac ccgccggggg cggggcctac attccaatgg 2101 ggcggagcct gagctagggg gtgtggcctg gctgctagag ttgtggtggc aggggccctg 2161 gccccgtctc aggattgcgc tcgctttcat gggaccagac gtgatgctgg aaggtgggcg 2221 tcgtcacggt taaagagaaa tgggctcgtc ccgagggtag tgcctgatca atgagggcgg 2281 ggcctggcgt ctgatctggg gccgccctta cggggcaggg ctcagtcctg acgcttgcca 2341 cctgctccta cccggccagg atggctgagg gcggagtcta ttttacgcgt cgcccaatga 2401 caggacctgg aatgtactgg ctggggtagg cctcagtgag tcggccggtc agggcccgca 2461 gcctcgcccc atccactccg gtgcctccat ttagctggcc aatcagccca ggaggggcag 2521 gttccccggg gccggcgcta ggatttgcac taatgttcct ctccccgcgg gtgggggcgg 2581 ggaaattcat atcccctgtt cgtctcatgc gcgtcctccg tccccaatct aaaaagcaat 2641 tgaaaaggtc tatgcaataa aggcagtcgc ttcattcctc tcaaaaaaaa aaaaaaaaaa 2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //