LOCUS BC010239 2164 bp mRNA linear HUM 23-AUG-2004 DEFINITION Homo sapiens ataxin 2-like, mRNA (cDNA clone IMAGE:4153822), partial cds. ACCESSION BC010239 VERSION BC010239.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2164) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2164) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (05-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC010239.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 19 Row: p Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..2164 /db_xref="H-InvDB:HIT000087462" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4153822" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..2164 /gene="ATXN2L" /gene_synonym="A2D" /gene_synonym="A2LG" /gene_synonym="A2LP" /gene_synonym="A2RP" /db_xref="GeneID:11273" /db_xref="MIM:607931" CDS <1..1206 /gene="ATXN2L" /gene_synonym="A2D" /gene_synonym="A2LG" /gene_synonym="A2LP" /gene_synonym="A2RP" /codon_start=1 /product="ATXN2L protein" /protein_id="AAH10239.1" /db_xref="GeneID:11273" /db_xref="MIM:607931" /translation="NKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHM GPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPP LVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIV SSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSP VQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHH QQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQS GVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAEGLQVG QDARVLGGE" BASE COUNT 428 a 782 c 544 g 410 t ORIGIN 1 aataaatcca ccagtacccc aacttctccg gggccccgga ctcattcaac tccctccatc 61 ccggtgctga cagcaggcca gagtgggcta tacagccccc agtacatctc ctacatacct 121 cagatccaca tgggaccagc tgtgcaggca cctcagatgt atccatatcc tgtatccaat 181 tcagtgcctg ggcagcaggg caagtaccgg ggagcaaaag gctcccttcc tccgcagcgc 241 tcggaccaac accagccagc ctcagccccg ccgatgatgc aggccgccgc ggctgctggc 301 ccgcctctgg tggctgccac gccctattct tcctacatcc cctacaaccc tcagcagttc 361 ccaggccagc cagccatgat gcagcccatg gcccactacc cctcacagcc ggtgtttgcc 421 cccatgcttc agagcaaccc acgcatgctg acgtcgggca gccatcccca ggccatcgtg 481 tcatcctcta cccctcagta cccttctgca gagcagccta ccccccaagc cctttatgcc 541 actgttcacc agtcctaccc acaccatgcc acacagctcc atgcccacca gccgcagccg 601 gctaccacgc ctactggaag ccagccgcag tcccagcatg cggcccccag tcctgtccag 661 cagcatcagg cggggcaggc cccacacttg ggcagtggac agccacagca gaatctgtac 721 cacccagggg ccctgacagg cacgccgccc tctctgccac cgggaccttc tgcccagtcc 781 cctcagagca gcttccccca gccagccgct gtgtatgcca tccaccacca gcagctgccc 841 cacggcttca ccaacatggc ccatgttacc caggcccatg tccaaactgg aatcacagca 901 gccccgcccc ctcaccctgg ggctccccac ccgccccagg tgatgctgct gcacccaccc 961 cagagtcatg gggggccccc ccaaggcgcg gtgccccaga gtggggtgcc tgcactctca 1021 gcttccacac cctcacccta cccctacatc ggacaccccc aaggtgagca gcctggccag 1081 gcgcctggat ttccaggagg agccgatgac aggattcgtg agttctcatt agctggggga 1141 atttggcatg gaagagctga ggggctgcag gtggggcagg atgcacgggt tctgggtggg 1201 gagtgagggg tcttggaggc agggctgtcc cacagggcgc ccgccgacct gcacctgtct 1261 gtgaagtatg tagggtgggc agaagccaca gtcgccgccg ccaggggctt gctcctggct 1321 ctgtcctttg cttccctccg tcctcgctca gttgtgatcc agcagccccc ctccccactg 1381 cctccccagc tctcagtgac cccgactgtc tcctgactta gccgaggtaa ggtcagtgca 1441 gcagacaggg ccagactggg gtgtgggggg ctgagctggg cacatgagtg agggctctgg 1501 cttactggga aacagcgatt gacctgtgct tctgacagcc cccgagacac cttgaggagg 1561 ccgctccttc ccagacacac ccccacgccc ccactggacg gcattggagg aagggacagc 1621 tgcttgggtt ctaatgctcc tgctctcttc tctttcccct ccaaccagtt caatctcatc 1681 cctcccagca gctccccttc caccccccgg ggaactgaag attgtcctgg ccgcgacctg 1741 agacctccat gagtggaggg aagagtgatc tatgtctctt cccccagcag ctcggaccac 1801 tcccagcccc ccatcccccc gttccccagg ggagctgggg aattcctgcc aagcaccttg 1861 aatgggaggg gcctcacaga gggcagggcc agggtccagc aggggtgggg ggttcctgct 1921 ctgcccctgc ccgtccccac ccagtcttgc cctcccatcc tctcatctat tcccccgctg 1981 gagacggaag atcttttatt ttctattatt tataacttca gacttgggcc ccctgttctt 2041 tctttcccat taacttgagt gacctgtgtg agagacagac agatgcccca cgaggatggc 2101 tggacaagga cttttacttt ttattacata aaaatattaa aaaataaata aaaaaaaaaa 2161 aaaa //