LOCUS BC009001 3296 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens 3-oxoacid CoA transferase 1, mRNA (cDNA clone
MGC:17088 IMAGE:4148643), complete cds.
ACCESSION BC009001
VERSION BC009001.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3296)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3296)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: e Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47458829.
FEATURES Location/Qualifiers
source 1..3296
/db_xref="H-InvDB:HIT000034134"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17088 IMAGE:4148643"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3296
/gene="OXCT1"
/gene_synonym="SCOT"
/db_xref="GeneID:5019"
/db_xref="HGNC:HGNC:8527"
/db_xref="MIM:601424"
CDS 56..1618
/gene="OXCT1"
/gene_synonym="SCOT"
/codon_start=1
/product="3-oxoacid CoA transferase 1"
/protein_id="AAH09001.1"
/db_xref="GeneID:5019"
/db_xref="HGNC:HGNC:8527"
/db_xref="MIM:601424"
/translation="MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYT
DPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLL
LRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTG
YGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRA
GNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYE
KRIERLSIRKEGDGEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFIS
PNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGG
HVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAH
KIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAV
SPKLMPMQQIAN"
BASE COUNT 988 a 602 c 761 g 945 t
ORIGIN
1 cgacgctcaa acgcgcgctc caacccgcag cctcctcctg cctcaccgcc cgaagatggc
61 ggctctcaaa ctcctctcct ccgggcttcg gctctgcgcc tctgcccgcg gatctggggc
121 aacctggtac aagggatgtg tttgttcctt ttccaccagt gctcatcgcc ataccaagtt
181 ttatacagat ccagtagaag ctgtaaaaga catccctgat ggtgccacgg ttttggttgg
241 tggttttggg ctatgtggaa ttccagagaa tcttatagat gctttactga aaactggagt
301 aaaaggacta actgcagtca gcaacaatgc aggggttgac aattttggtt tggggctttt
361 gcttcggtcc aagcagataa aacgcatggt ctcttcatat gtgggagaaa atgcagaatt
421 tgaacgacag tacttatctg gtgaattaga agtggagctg acaccacagg gcacacttgc
481 agagaggatc cgtgcaggcg gggctggagt tcctgcattt tacaccccaa cagggtatgg
541 gaccctggta caagaaggag gatcgcccat caaatacaac aaagatggca gtgttgccat
601 tgccagtaag ccaagagagg tgagggagtt caatggtcag cactttattt tggaggaagc
661 aattacaggg gattttgctt tggtgaaagc ctggaaggcg gaccgagcag gaaacgtgat
721 tttcaggaaa agtgcaagga atttcaactt gccaatgtgc aaagctgcag aaaccacagt
781 ggtagaggtt gaagaaattg tggatattgg agcatttgct ccagaagaca tccatattcc
841 tcagatttat gtacatcgcc ttataaaggg agaaaaatat gagaaaagaa ttgagcgttt
901 atcaatccgg aaagagggag atggggaagc caaatctgct aaacctggag atgacgtaag
961 ggaacgaatc atcaagaggg ccgctcttga gtttgaggat ggcatgtatg ctaatttggg
1021 cataggaatc cctctcctgg ccagcaattt tatcagccca aatataactg ttcatcttca
1081 aagtgaaaat ggagttctgg gtttgggtcc atatccacga caacatgaag ctgatgcaga
1141 tctcatcaat gcaggcaagg aaacagttac tattcttcca ggagcctctt ttttctccag
1201 cgatgaatca tttgcaatga ttagaggtgg acacgtcgat ctgacaatgc taggagcgat
1261 gcaggtttcc aaatatggtg acctggctaa ctggatgata cctgggaaga tggtgaaagg
1321 aatgggaggt gctatggatt tagtgtccag tgcgaaaacc aaagtggtgg tcaccatgga
1381 gcattctgca aagggaaatg cacataaaat catggagaaa tgtacattac cattgactgg
1441 aaagcaatgt gtcaaccgca ttattactga aaaggctgtg tttgatgtgg acaagaagaa
1501 agggttgact ctgattgagc tctgggaagg cctgacagtg gatgacgtac agaagagtac
1561 tgggtgtgat tttgcagttt caccaaaact catgccaatg cagcagatcg caaattgaaa
1621 tatggatatt tgtaccaggc tgcgtgtttt tcattttaaa cacacaagat ttaattgaaa
1681 ggacatcaat aatcataatt gtgtatttaa caggtggttt tttattagtt ttcttgtgtt
1741 tcagacttta tgcagccata taaactgttc tctaggcatg ctgtgacatt ttaataaaaa
1801 gcaaaaggag catttataat tatctcattt gttaaggctg agaaggttgt ttttataata
1861 ggtaattata ttgaatgcat tttcactgaa tatggtatgt atgctaaatt atatgaacct
1921 ttccccaaga agggccctag aaattgatgt ggctttcctc ttaaatatta attattagtc
1981 ctgaaagaaa gataacatat gtgatttttg tggttaggag agttgctgtc atgattgttt
2041 tttcttcagc ctcctctgac ttttcttttg gggcttcaga ttttatgatt acatcttgtc
2101 cccctagaac atcccccttc ctcccatact gcttttaaac agatgcccaa gaaggcaagc
2161 aggaatgcct cttgtggggg agggcaggga gaaataacta gttcaaacca actatctatc
2221 tatgctttgc aaagactaag gcgtattata ggaagagggc tagaaaccta actgattctt
2281 ctcagttttc tcattttaaa acagcccagt attcctttgt atcctcaagg gtccttgaga
2341 atacttctgt tattgagacc ctgtgggcta cttgtactgt acctcctctc aagccaagaa
2401 gggctgtggg ataatttacc atgaatcctt agtagcaatg acagcagagt taaaaaataa
2461 aaggtgtttt actttcaggc tcttgttttg gttcagagga gattttaaat attgaatgac
2521 acttctacag aacaacggtt tttcttctgc caaggctact tcctttaacg aagtgccttt
2581 aattcagcct tatccaacta gggaaaataa tgttggacaa gtctaggatt tgaagagtca
2641 gtgaactttt agtgtcaggg aataaacatg gtgggtagat taggtttgaa aaaaacttcc
2701 ttagaggtat ttattctcaa tacctgacag gggcccatgg gaatgacttc agaagcatcc
2761 cggataatag atgggtaaaa agtctaggca ccctgaagaa caggtgagac agctggcctc
2821 tggacagagg taggcatagt acagtacgat atatcattcc tctggtccta aatatacaaa
2881 cttattcatg tttttaggtg atgatggtca ttgaaactca cttcttttca ggtgtagcta
2941 caattgtgta atgtacaata ttagagaaag gacaggcttt ttatgagtaa cacacaccat
3001 atataaaaca gcctttctgg ctgaccacat ggttaaatgc ataccttccc agtactgggg
3061 ggaaaaaatg acccttctta gaatgtgcaa gttccatgag agtaatatat tgatatgatt
3121 ttgaaaagaa ttgttgatag ttacatcttc aaacttatca ttccagtatg catctttaag
3181 ataatgtgat tctaagtaga tgactttata ttcttgatta aagagtgcta tacatgttaa
3241 gaaatgcatt aaggaataca ataaatattc taaagtgatg taaaaaaaaa aaaaaa
//