LOCUS BC008829 2039 bp mRNA linear HUM 03-OCT-2003 DEFINITION Homo sapiens short stature homeobox 2, mRNA (cDNA clone MGC:12649 IMAGE:4122010), complete cds. ACCESSION BC008829 VERSION BC008829.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2039) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2039) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC008829.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 17 Row: f Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 6031199. FEATURES Location/Qualifiers source 1..2039 /db_xref="H-InvDB:HIT000034003" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12649 IMAGE:4122010" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2039 /gene="SHOX2" /gene_synonym="OG12" /gene_synonym="OG12X" /gene_synonym="OGI2X" /gene_synonym="SHOT" /db_xref="GeneID:6474" /db_xref="MIM:602504" CDS 140..1207 /gene="SHOX2" /gene_synonym="OG12" /gene_synonym="OG12X" /gene_synonym="OGI2X" /gene_synonym="SHOT" /codon_start=1 /product="SHOX2 protein" /protein_id="AAH08829.1" /db_xref="GeneID:6474" /db_xref="MIM:602504" /translation="MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCT EAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAA ERSREPGSPRLTEGRRKPTKAEVQATLLLPGEAFRFLVSPELKDRKEDAKGMEDEGQT KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK CRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQ LDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS KNSSIADLRLKAKKHAAALGL" misc_feature 632..802 /gene="SHOX2" /gene_synonym="OG12" /gene_synonym="OG12X" /gene_synonym="OGI2X" /gene_synonym="SHOT" /note="homeobox; Region: Homeobox domain" /db_xref="CDD:pfam00046" BASE COUNT 543 a 520 c 612 g 364 t ORIGIN 1 ccacctccct ctcctccccc acctcctgtc ccattgatgt gttattattg ggggggctgg 61 agcagtaaaa aaagaagaag gaaaaaaaga gcggggctct gctggcagag gttgagcgcc 121 gggctgacgt gcggcggcga tggaagaact tacggcgttc gtctccaagt cttttgacca 181 gaaagtgaag gagaagaagg aggcgatcac gtaccgggag gtgctggaga gcgggccgct 241 gcgcggggcc aaggagccga ccggctgcac cgaggcgggc cgcgacgacc gcagcagccc 301 ggcagtccgg gcggccggcg gaggcggcgg cggaggaggc ggaggcggcg gcggaggagg 361 cggaggaggt gtaggaggag gaggagcagg cggaggagct ggaggagggc gctctcccgt 421 ccgggagctg gacatgggcg ccgccgagag aagcagggag ccgggcagcc cgcgactgac 481 ggagggtaga aggaagccaa cgaaagctga ggtccaggct acgctgcttc tcccgggcga 541 ggcgtttcgg tttcttgtgt ccccggagct gaaagatcgc aaagaggatg cgaaagggat 601 ggaggacgaa ggccagacca aaatcaagca gaggcgaagt cggaccaatt tcaccctgga 661 acaactcaat gagctggaga ggctttttga cgagacccac tatcccgacg ccttcatgcg 721 agaggaactg agccagcgac tgggcctgtc ggaggcccga gtgcaggttt ggtttcaaaa 781 tcgaagagct aaatgtagaa aacaagaaaa tcaactccat aaaggtgttc tcataggggc 841 cgccagccag tttgaagctt gtagagtcgc accttatgtc aacgtaggtg ctttaaggat 901 gccatttcag caggatagtc attgcaacgt gacgcccttg tcctttcagg ttcaggcgca 961 gctgcagctg gacagcgctg tggcgcacgc gcaccaccac ctgcatccgc acctggccgc 1021 gcacgcgccc tacatgatgt tcccagcacc gcccttcgga ctgccgctcg ccacgctggc 1081 cgcggattcg gcttccgccg cctcggtagt ggcggccgca gcagccgcca agaccaccag 1141 caagaactcc agcatcgccg atctcagact gaaagccaaa aagcacgccg cagccctggg 1201 tctgtgacgc caacgccagc accaatgtcg cgcctgtccc gcggcactca gcctgcacgc 1261 cctccgcgcc ccgctgcttc tccgttaccc ctttgagacc tcgggagccg gccctcttcc 1321 cgcctcactg accatccctc gtcccctatc gcatcttgga ctcggaaagc cagactccac 1381 gcaggaccag ggatctcacg aggcacgcag gctccgtggc tcctgcccgt tttcctactc 1441 gagggcctag aattgggttt tgtaggagcg ggtttggggg agtctggaga gagactggac 1501 aggggagtgc tggaaccgcg gagtttggct caccgcaaag ctacaacgat ggactcttgc 1561 atagaaaaaa aaatcttgtt aacaatgaaa aaatgagcaa acaaaaaaat cgaaagacaa 1621 acgggagaga aaaagaggaa ggaaacttat ttcttaactg ctatttggca gaagctgaaa 1681 ttggagaacc aaggagcaaa aacaaatttt aaaattaaag tattttatac atttaaaaat 1741 atggaaaaac aacccagacg attctcgaga gactgggggg agttaccaac ttaaatgtgt 1801 gtttttaaaa atgcgctaag aaggcaaagc agaaagaaga ggtatactta tttaaaaaac 1861 taagatgaaa aaagtgcgca gctgggaagt tcacaggttt tgaaactgac ctttttctgc 1921 gaagttcacg ttaatacgag aaatttgatg agagaggcgg gcctcctttt acgttgaatc 1981 agatgctttg agtttaaacc caccatgtat ggaagagcaa gaaaaaaaaa aaaaaaaaa //