LOCUS       BC008829                2039 bp    mRNA    linear   HUM 03-OCT-2003
DEFINITION  Homo sapiens short stature homeobox 2, mRNA (cDNA clone MGC:12649
            IMAGE:4122010), complete cds.
ACCESSION   BC008829
VERSION     BC008829.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Aug 19, 2003 this sequence version replaced BC008829.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 17 Row: f Column: 18
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 6031199.
FEATURES             Location/Qualifiers
     source          1..2039
                     /db_xref="H-InvDB:HIT000034003"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:12649 IMAGE:4122010"
                     /tissue_type="Muscle, rhabdomyosarcoma"
                     /clone_lib="NIH_MGC_17"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..2039
                     /gene="SHOX2"
                     /gene_synonym="OG12"
                     /gene_synonym="OG12X"
                     /gene_synonym="OGI2X"
                     /gene_synonym="SHOT"
                     /db_xref="GeneID:6474"
                     /db_xref="MIM:602504"
     CDS             140..1207
                     /gene="SHOX2"
                     /gene_synonym="OG12"
                     /gene_synonym="OG12X"
                     /gene_synonym="OGI2X"
                     /gene_synonym="SHOT"
                     /codon_start=1
                     /product="SHOX2 protein"
                     /protein_id="AAH08829.1"
                     /db_xref="GeneID:6474"
                     /db_xref="MIM:602504"
                     /translation="MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCT
                     EAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAA
                     ERSREPGSPRLTEGRRKPTKAEVQATLLLPGEAFRFLVSPELKDRKEDAKGMEDEGQT
                     KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK
                     CRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQ
                     LDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS
                     KNSSIADLRLKAKKHAAALGL"
     misc_feature    632..802
                     /gene="SHOX2"
                     /gene_synonym="OG12"
                     /gene_synonym="OG12X"
                     /gene_synonym="OGI2X"
                     /gene_synonym="SHOT"
                     /note="homeobox; Region: Homeobox domain"
                     /db_xref="CDD:pfam00046"
BASE COUNT          543 a          520 c          612 g          364 t
ORIGIN      
        1 ccacctccct ctcctccccc acctcctgtc ccattgatgt gttattattg ggggggctgg
       61 agcagtaaaa aaagaagaag gaaaaaaaga gcggggctct gctggcagag gttgagcgcc
      121 gggctgacgt gcggcggcga tggaagaact tacggcgttc gtctccaagt cttttgacca
      181 gaaagtgaag gagaagaagg aggcgatcac gtaccgggag gtgctggaga gcgggccgct
      241 gcgcggggcc aaggagccga ccggctgcac cgaggcgggc cgcgacgacc gcagcagccc
      301 ggcagtccgg gcggccggcg gaggcggcgg cggaggaggc ggaggcggcg gcggaggagg
      361 cggaggaggt gtaggaggag gaggagcagg cggaggagct ggaggagggc gctctcccgt
      421 ccgggagctg gacatgggcg ccgccgagag aagcagggag ccgggcagcc cgcgactgac
      481 ggagggtaga aggaagccaa cgaaagctga ggtccaggct acgctgcttc tcccgggcga
      541 ggcgtttcgg tttcttgtgt ccccggagct gaaagatcgc aaagaggatg cgaaagggat
      601 ggaggacgaa ggccagacca aaatcaagca gaggcgaagt cggaccaatt tcaccctgga
      661 acaactcaat gagctggaga ggctttttga cgagacccac tatcccgacg ccttcatgcg
      721 agaggaactg agccagcgac tgggcctgtc ggaggcccga gtgcaggttt ggtttcaaaa
      781 tcgaagagct aaatgtagaa aacaagaaaa tcaactccat aaaggtgttc tcataggggc
      841 cgccagccag tttgaagctt gtagagtcgc accttatgtc aacgtaggtg ctttaaggat
      901 gccatttcag caggatagtc attgcaacgt gacgcccttg tcctttcagg ttcaggcgca
      961 gctgcagctg gacagcgctg tggcgcacgc gcaccaccac ctgcatccgc acctggccgc
     1021 gcacgcgccc tacatgatgt tcccagcacc gcccttcgga ctgccgctcg ccacgctggc
     1081 cgcggattcg gcttccgccg cctcggtagt ggcggccgca gcagccgcca agaccaccag
     1141 caagaactcc agcatcgccg atctcagact gaaagccaaa aagcacgccg cagccctggg
     1201 tctgtgacgc caacgccagc accaatgtcg cgcctgtccc gcggcactca gcctgcacgc
     1261 cctccgcgcc ccgctgcttc tccgttaccc ctttgagacc tcgggagccg gccctcttcc
     1321 cgcctcactg accatccctc gtcccctatc gcatcttgga ctcggaaagc cagactccac
     1381 gcaggaccag ggatctcacg aggcacgcag gctccgtggc tcctgcccgt tttcctactc
     1441 gagggcctag aattgggttt tgtaggagcg ggtttggggg agtctggaga gagactggac
     1501 aggggagtgc tggaaccgcg gagtttggct caccgcaaag ctacaacgat ggactcttgc
     1561 atagaaaaaa aaatcttgtt aacaatgaaa aaatgagcaa acaaaaaaat cgaaagacaa
     1621 acgggagaga aaaagaggaa ggaaacttat ttcttaactg ctatttggca gaagctgaaa
     1681 ttggagaacc aaggagcaaa aacaaatttt aaaattaaag tattttatac atttaaaaat
     1741 atggaaaaac aacccagacg attctcgaga gactgggggg agttaccaac ttaaatgtgt
     1801 gtttttaaaa atgcgctaag aaggcaaagc agaaagaaga ggtatactta tttaaaaaac
     1861 taagatgaaa aaagtgcgca gctgggaagt tcacaggttt tgaaactgac ctttttctgc
     1921 gaagttcacg ttaatacgag aaatttgatg agagaggcgg gcctcctttt acgttgaatc
     1981 agatgctttg agtttaaacc caccatgtat ggaagagcaa gaaaaaaaaa aaaaaaaaa
//