LOCUS BC008611 1436 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens major histocompatibility complex, class I, A, mRNA (cDNA clone MGC:17191 IMAGE:4157200), complete cds. ACCESSION BC008611 VERSION BC008611.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1436) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1436) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: e Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1436 /db_xref="H-InvDB:HIT000033861" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17191 IMAGE:4157200" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1436 /gene="HLA-A" /db_xref="GeneID:3105" /db_xref="MIM:142800" CDS 6..1103 /gene="HLA-A" /codon_start=1 /product="HLA-A protein" /protein_id="AAH08611.1" /db_xref="GeneID:3105" /db_xref="MIM:142800" /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEP RFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESL RIALRYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAA DMAAQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAV SDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSG QEQRYTCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRR KSSDRKGGSYSQAASSDSAQGSDMSLTACKV" misc_feature 78..614 /gene="HLA-A" /note="MHC_I; Region: Class I Histocompatibility antigen, domains alpha 1 and 2" /db_xref="CDD:pfam00129" misc_feature 669..884 /gene="HLA-A" /note="IGc1; Region: Immunoglobulin C-Type" /db_xref="CDD:smart00407" BASE COUNT 295 a 420 c 447 g 274 t ORIGIN 1 cgaggatggc cgtcatggcg ccccgaaccc tcgtcctgct actctcgggg gccctggccc 61 tgacccagac ctgggcgggc tcccactcca tgaggtattt ctacacctcc gtgtcccggc 121 ccggccgcgg ggagccccgc ttcatcgccg tgggctacgt ggacgacacg cagttcgtgc 181 ggttcgacag cgacgccgcg agccagagga tggagccgcg ggcgccgtgg atagagcagg 241 aggggccgga gtattgggac cggaacacac ggaatgtgaa ggcccactca cagactgacc 301 gagagagcct gcggatcgcg ctccgctact acaaccagag cgaggacggt tctcacacca 361 tccagaggat gtatggctgc gacgtggggc cggacgggcg cttcctccgc gggtaccagc 421 aggacgctta cgacggcaag gattacatcg ccctgaacga ggacctgcgc tcttggaccg 481 cggcggacat ggcggctcag atcacccagc gcaagtggga gacggcccat gaggcggagc 541 agtggagagc ctacctggag ggccggtgcg tggagtggct ccgcagatac ctggagaacg 601 ggaaggagac gctgcagcgc acggacgccc ccaagacgca tatgactcac cacgctgtct 661 ctgaccatga ggccaccctg aggtgctggg ccctgagctt ctaccctgcg gagatcacac 721 tgacctggca gcgggatggg gaggaccaga cccaggacac ggagctcgtg gagaccaggc 781 ctgcagggga tgggaccttc cagaagtggg cgtctgtggt ggtgccttct ggacaggagc 841 agagatacac ctgccatgtg cagcatgagg gtctgcccaa gcccctcacc ctgagatggg 901 agccgtcttc ccagcccacc atccccatcg tgggcatcat tgctggcctg gttctctttg 961 gagctgtgat cgctggagct gtggtcgctg ctgtgatgtg gaggaggaag agctcagata 1021 gaaaaggagg gagctactct caggctgcaa gcagtgacag tgcccagggc tctgatatgt 1081 ctctcacagc ttgtaaagtg tgagacagct gccttgtgtg ggactgagag gcaagatttg 1141 ttcctgccct tccctttgtg acttgaagaa ccctgacttt gtttctgcaa aggcacctgc 1201 atgtgtctgt gttcttgtag gcataatgtg aggaggtggg gagaccaccc cacccccatg 1261 tccaccatga ccctcttccc acgctgacct gtgctccctc cccaatcatc tttcctgttc 1321 cagagaggtg gggctgaggt gtctccatct ctgcctcaac ttcatggtgc actgagctgt 1381 aactttttcc ttccctatta aaattagaac ctgagtataa aaaaaaaaaa aaaaaa //