LOCUS BC008332 3922 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:3505732), partial cds.
ACCESSION BC008332
VERSION BC008332.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3922)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3922)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: d Column: 20.
FEATURES Location/Qualifiers
source 1..3922
/db_xref="H-InvDB:HIT000087038"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3505732"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3922
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..2256
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=1
/product="SEC16A protein"
/protein_id="AAH08332.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="PAAAASSLERETERFRELLLYGRKKDALESAMKNGLWGHALLLA
SKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMV
LSNLNNNMDVESRTMATMGDTLASRGLLDAAHFCYLMAQAGFGVYTKKTTKLVLIGSN
HSLPFLKFATNEAIQRTEAYEYAQSLGAETCPLPSFQVFKFIYSCRLAEMGLATQAFH
YCEAIAKSILTQPHLYSPVLISQLVQMASQLRLFDPQLKEKPEEESLAAPTWLVHLQQ
VERQIKEGAGVWHQDGALPQQCPGTPSSEMEQLDRPGLSQPGALGIANPLLAVPAPSP
EHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGPLEPGPGCVTPGPALGFLEP
SGPGLPPGVPPLQERRHLLQEARSPDPGIVPQEAPVGNSLSELSEENFDGKFANLTPS
RTVPDSEAPPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKETKEPKKGESWFFRWLP
GKKKTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTSMPKTVQAAPPALP
GPPGAPVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFVAPLAPLPIPSNLFVP
TPDAEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAASLPGSELPSSRPEGSQGG
ELSRCSSMSSLSREVSQHFNQAPGDLPAAGGPPSGAMPFYNPAQLAQACATSGSSRLG
RIGQRKHLVLN"
BASE COUNT 874 a 1106 c 1056 g 886 t
ORIGIN
1 ccggcggctg ccgccagctc gctcgagaga gagaccgaga ggttcaggga gctgttgctg
61 tatggccgta agaaggatgc tttggagtct gcaatgaaga atggcctgtg gggtcacgct
121 ctgctacttg caagtaagat ggacagccgg acacacgccc gagtcatgac caggtttgct
181 aacagcctcc caatcaacga ccctctgcag acagtctacc agctcatgtc cggacggatg
241 cctgccgcgt ccacgtgctg tggagacgag aaatggggag attggaggcc gcacctcgcc
301 atggtcttgt ccaacttgaa caacaacatg gacgtcgagt ccaggacgat ggctaccatg
361 ggcgacactc tggcttcaag gggcctcttg gatgcggccc acttctgcta cctcatggcc
421 caggcgggat ttggtgttta cacgaagaaa actacaaagc ttgtcttaat cggatccaat
481 cacagtttgc cattcttaaa gttcgcaacc aacgaagcaa tccagaggac ggaagcctat
541 gagtacgccc agtccctggg tgccgagacc tgccccctgc ctagtttcca ggtgtttaag
601 ttcatctact cctgccgcct ggcggaaatg gggctggcca cgcaagcctt ccactactgt
661 gaggccatcg cgaagagcat cctgacgcag ccgcacctgt attccccggt gttgatcagc
721 cagcttgtgc agatggcttc ccagttacga ctcttcgatc cccagctgaa agagaagcca
781 gaagaggagt ccttggccgc acccacgtgg ctggttcacc tgcagcaggt ggagcggcag
841 attaaggagg gggctggagt atggcatcag gatggagccc tcccgcagca gtgtcctggc
901 actccgagtt ccgagatgga gcagttggac aggccaggac tcagtcagcc aggagccctg
961 gggatcgcca accctctgct ggcggtgcct gcaccgagcc ctgagcactc gagcccgagc
1021 gtgcggctgc tgccctcagc tccgcagacg ctccctgacg gcccattggc cagtcctgcc
1081 agagtgccga tgttcccagt gccactgccc ccggggcccc tggagccggg tcctggctgt
1141 gtgaccccag ggcctgcact tggcttcctg gagccctccg ggcctggcct cccacctggt
1201 gtgccacctc tgcaggaaag gagacacttg ctccaggaag ccaggagccc agacccaggg
1261 atagtgccgc aggaggcgcc tgttggaaac tcactttccg agctaagcga agaaaatttt
1321 gatggaaaat ttgctaatct gaccccctcg aggacggtgc cagactcgga ggccccccca
1381 gggtgggatc gtgccgactc gggtcccacg cagccacctc tgtctctctc acccgctccc
1441 gaaacaaaga gacccggaca ggcagccaag aaagaaacga aggaacctaa gaagggtgaa
1501 tcctggttct ttcgttggct acctggaaag aaaaagacag aagcttattt gccagatgac
1561 aagaacaaat cgattgtttg ggatgaaaag aaaaaccagt gggtgaattt aaatgagcca
1621 gaagaggaga agaaagcccc gcccccacct ccaacctcga tgcccaagac tgtgcaagct
1681 gccccgcctg ccctcccagg gcctcctgga gcccccgtga acatgtactc tagaagagca
1741 gcaggaacca gagctcgcta cgttgacgtc ctgaacccaa gcgggaccca gcggagcgag
1801 ccggctctcg ctcctgcgga ctttgtcgct ccactcgcgc cactcccaat tccttctaac
1861 ttgttcgtgc caaccccaga tgcagaagaa ccacagcttc cagacgggac tggcagggaa
1921 gggcctgcag cagctagggg cctggccaat ccagagcctg ccccagagcc caaggtttta
1981 agctctgcag cgtcactccc tggctctgaa ctcccctcct ccaggcctga gggttcccag
2041 ggaggagagc tttcgcgctg tagttcaatg agttcattat cacgtgaagt gagccagcat
2101 tttaatcagg ctcctggcga cctccctgct gcagggggcc ctcccagcgg ggccatgccc
2161 ttctacaacc ctgctcagct ggcacaggcc tgcgccacct ctgggagctc aaggctaggg
2221 aggattggcc agaggaagca cctggtgctg aactaggctt gccctgctgt gaacttgcac
2281 ttggagccct gacgctgctg ttctccccga agaacccgac cgacctccgc gatctccgtc
2341 ccgcccccag ggagacacag cagtgactca gagctggtcg cacactgtgc ctccctcctc
2401 accgcccatc gtaatgaatt attttgaaaa ttaattccac catcctttca gattctggat
2461 ggaaagactg aatctttgac tcagaattgt ttgccgaaaa gaatgatgtg actttcttag
2521 tcatttagga tgatttaagg atatagtatt cctggtcatt taagaatgtt cattcattga
2581 agccggagct gtctctgcca caggagagcc atatggtcgg tagtaaccag ggcctctcca
2641 agcccagctg tgagtcactg cccagtgagt cccgcgcttc ctttaaggtg ctgggagcaa
2701 agagagggtg actgaggcag accccaaccc ctgctctgca ccatctgggc cctcgccgtg
2761 tttgaacctg gctgaatgag tggagggcgc tgtgttctca atcagcgcct ccgaggagcc
2821 gtggggttcc ttcggcatta gttcacggtt tttgagagag gccctagtta ctgcagtgaa
2881 tttctttcct gttgcaaaga cgcttccagc ctcactttac tttctgtggc ctgatgagga
2941 ccatgggtga ttttgtgtac ccaaagcgct ggggactgcc caccgtgtgg cccagtcact
3001 gggaaggagc cccagagagc cggctgtctg acatgatggc tcagggtggt catccaggtt
3061 gaaaactgac cgtgtgatgt ttgatttggg cttcatttcg tgtgtaggag cacggttaga
3121 ctcactgtta aggaagctgg atgcacttct ctaaaaggct gcactttccg tgagcacttt
3181 tcgtggtaca atccacatga cccactttct cccctggggg acgttggttc agaggttggt
3241 agcacttggg gagagtatct taacacagtt tcttgacagc agctctggaa cttagtattt
3301 ctgccccgag ttttgccaca ctgagacttt gagtagctcc tggtggactc aaccctgttc
3361 aactcagaga cgggcctcct ctcactgatg caaagcttta aggcttctct gactgttctg
3421 aaactcttcg tattcttgtc aagtctaaag agactgaaga aaagatttaa atactaataa
3481 aaatcagtag ataatttctg taggttctgc tggaggaata caaactgttt ggtgttttaa
3541 atttaagtgt agaaattgta gaatgtggaa ttagcacaga tccttcctgg ctttctgttt
3601 cacttgatca tttagcccag accacccagg atgttttcca aaatgtttca caggcgtgtc
3661 ccgctggatc catttgtcct tgtcacttgg agaaaggcca gtccctgtga cggggcagcc
3721 ctctctgtcc ctcggtcagc tcgtgtgaat cctgggacct cttccggtcg gctctgcccg
3781 ctgttctggg gtcgactgcc acgacttttg attcaagaag cttcctccag gcgggagcgg
3841 ctatttttcc taaatgagaa ttgttacatt gcaaattgtt gaataaaata ttttgcgctc
3901 cttcaaaaaa aaaaaaaaaa aa
//