LOCUS BC007953 1796 bp mRNA linear HUM 20-OCT-2005
DEFINITION Homo sapiens WD repeat domain 25, mRNA (cDNA clone IMAGE:4299080).
ACCESSION BC007953
VERSION BC007953.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1796)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1796)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced gi:14044060.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52694655.
Differences found between this sequence and the human reference
genome (build 36) are described in misc_difference features below
and these differences were also compared to chimpanzee genome
(build 2).
FEATURES Location/Qualifiers
source 1..1796
/db_xref="H-InvDB:HIT000033554"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4299080"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
misc_difference 287
/note="'C' in cDNA is 'T' in the human genome. The
chimpanzee genome agrees with the cDNA sequence,
suggesting that this difference is unlikely to be due to
an artifact."
misc_difference 471
/note="'G' in cDNA is 'A' in the human genome. The
chimpanzee genome agrees with the cDNA sequence,
suggesting that this difference is unlikely to be due to
an artifact."
misc_difference 694
/note="'G' in cDNA is 'A' in the human genome. The
chimpanzee genome agrees with the cDNA sequence,
suggesting that this difference is unlikely to be due to
an artifact."
misc_difference 1762..1796
/note="polyA tail: 35 bases do not align to the human
genome."
BASE COUNT 439 a 488 c 479 g 390 t
ORIGIN
1 ggtgcgtgtg gtggtttggc tttgaatgac agcaagaact ctgtctttaa tggcttcatt
61 ggtagcgtat gatgattcgg actcggaggc tgagacagag catgcaggaa gttttaatgc
121 taccggccag cagaaagaca cttctggtgt ggccagacca cctgggcagg attttgcatc
181 tggtacactg gatgtgccca aagcaggggc acagcccaca aagcatggct cctgtgaaga
241 cccagggggc tatcgccttc cattggctca gcttgggaga agcgatcggg gatcttgccc
301 cagccagagg ctacagtggc ccgggaagga gcctcaagtc accttcccca tcaaagagcc
361 ttcttgttct tctctgtgga cgagccatgt tccagccagc cacatgcccc tggcagctgc
421 ccgctttaag caagtaaaac tctccaggaa ctttcccaag tcatctttcc gtgctcaaag
481 tgagtctgaa accgtaggta aaaatggcag ctcttttcag aagaaaaaat gtgaggactg
541 tgtggtaccc tatactccca gaagactaag acagcggcag gcattaagca cggagacagg
601 caagggtaaa gacgtggagc cacaggggcc ccctgcaggg cgtgccccag cccctctcta
661 cgtgggcccg ggagtgtctg agtttattca gccgtatttg aatagccatt ataaagaaac
721 cacagttccc cggaaagtgc ttttccacct gagaggccac aggggccctg tcaacaccat
781 tcagtggtgt ccagtccttt ctaagagcca catgcttctc tccacttcta tggataaaac
841 tttcaaggaa cccagctatt tagtggtcga agtgacttta gaatcactac cttgaaattc
901 catccaaaag accacaacat ctttttatgt ggaggcttca gctctgaaat gaaagcttgg
961 gatataagga ctggcaaggt gatgagaagc tacaaggcga ccatccagca gaccttggac
1021 atcctgttcc tccgggaagg ctccgagttc ctgagcagca cagacgcttc cacccgggac
1081 tcagctgacc gcaccattat tgcctgggat ttccggacct ctgccaaaat ctccaaccag
1141 attttccacg agaggttcac ctgccccagc ctcgccttgc acccgagaga gcccgtgttc
1201 ctggcacaga ccaatggcaa ctacctggcc cttttctcca ctgtgtggcc ctaccggatg
1261 agcagacggc ggcgctatga agggcacaag gtggagggct actcagtggg ctgcgagtgc
1321 tccccaggcg gtgacttgct ggtgacgggc agcgccgatg gccgggtcct gatgtacagc
1381 ttccgcacag ccagccgagc atgcacactg caggggcaca cacaggcctg tgtcggcacc
1441 acctatcacc ccgtgctgcc ctccgtcctc gccacctgct cctggggagg ggacatgaag
1501 atctggcact gagctttttg tcactgaacc ttcccgatgc cagctgggct cttggactcc
1561 cctcttcctc aagggtagat gagaggaacg agcacagagg ttggctgtgg gtcctgggta
1621 ccaccttctg agcctcagtt tcctcatctg taaagtgggg agaaaagtct gtttgcctca
1681 ggagtgtgag gactacacta gtgaaagcgc ctggcgggca gccggcgatg cccaataaat
1741 gtgtgttttg ctgtttgtta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//