LOCUS BC006142 1587 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens proteasomal ATPase-associated factor 1, mRNA (cDNA
clone MGC:13088 IMAGE:3937356), complete cds.
ACCESSION BC006142
VERSION BC006142.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1587)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1587)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Mar 26, 2002 this sequence version replaced BC006142.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: l Column: 17.
FEATURES Location/Qualifiers
source 1..1587
/db_xref="H-InvDB:HIT000032632"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13088 IMAGE:3937356"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1587
/gene="PAAF1"
/gene_synonym="PAAF"
/db_xref="GeneID:80227"
/db_xref="HGNC:HGNC:25687"
CDS 7..1185
/gene="PAAF1"
/gene_synonym="PAAF"
/codon_start=1
/product="proteasomal ATPase-associated factor 1"
/protein_id="AAH06142.2"
/db_xref="GeneID:80227"
/db_xref="HGNC:HGNC:25687"
/translation="MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPSLYGSLTCQGIG
LDGIPEVTVSEGFTVNEINKKSIHISCPKENASSKFLAPYTTFSRIHTKSITCLDISS
RGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKI
WSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCG
SSINGVAVGAADNSINLGSPEQMPSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFL
FIGSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRSPRAPVQVIHRSGAPVLSLLSVRDG
FIASQGDGSCFIVQQDLDYVTELTGADCDPVYKVATWEKQIYTCCRDGLVRRYQLSDL
"
BASE COUNT 429 a 333 c 416 g 409 t
ORIGIN
1 gtcgagatgg cggcgccttt gaggattcag agcgactggg cgcaagccct caggaaggat
61 gaaggggagg cctggctgag ctgtcatccc ccagggaaac catctttgta tggcagcctg
121 acttgtcaag gaattggcct agatggcatc ccagaggtta cagtttcaga aggatttact
181 gtgaatgaaa taaacaagaa aagcattcat atttcatgtc caaaggaaaa tgcatcttct
241 aagtttttgg caccatatac tactttttcc agaattcata caaagagtat aacatgcctg
301 gacatttcca gcagaggagg tcttggtgtg tcttctagta ctgacgggac catgaaaatc
361 tggcaggctt ccaatggaga actcaggaga gtattggaag gacatgtgtt tgatgtgaat
421 tgttgcaggt ttttcccatc aggccttgtg gtcctgagtg ggggaatgga tgcccagctg
481 aagatatggt cagctgaaga tgctagctgc gtggtgacct tcaaaggtca caaaggaggt
541 atcctggata cagccatcgt tgatcggggg aggaatgtgg tgtctgcttc tcgagatggg
601 acagcacgac tttgggattg tgggcgctca gcctgcttgg gagtccttgc agattgtggt
661 tcttctatca atggagtggc ggtgggtgct gctgacaact ccataaacct tggctcccct
721 gagcagatgc ccagtgaacg ggaggttgga acagaggcca aaatgctgct cttggcccgg
781 gaagataaga aacttcagtg cttgggacta cagagcaggc agctggtgtt cctctttatt
841 ggctcagacg ctttcaactg ctgtactttt ctctctggct tcttgctatt ggctgggact
901 caagatggaa acatttatca gctggatgtg aggagtccaa gggctccggt acaagtcatc
961 cacagatcag gagcaccagt tctatccctg ctaagtgtca gagatggatt cattgctagc
1021 caaggtgatg gaagctgttt tattgtccag caagacttag actatgtcac tgagctcact
1081 ggggctgact gtgaccctgt gtacaaggta gccacatggg agaagcagat ctacacatgc
1141 tgtcgagacg gtcttgtacg acgctaccag ctttctgacc tctgacttct tggaaagagc
1201 agtcccggtt agtgaaaagg tttgaccctg atcaacaatg agcagaaaca tcatcagtcc
1261 ttcccaagga ccatggcgtt taatgtcttg ggcacccctt ggaaatcaca gaaagtcagc
1321 tgtactggcc gtgtggaact ctcatcccaa gacctacttt gaactgagta agaaggtcat
1381 tgtgcccact gcatttgttc caacttctcc ttgtataaac tcaccccagc aacacagggc
1441 aaggatatag atgcttttag tttgttctta aaccagtttt gttaaatgtt tacaaggacc
1501 tcagtactaa agcctgttct ctggaggaaa taaagaaaat atgtttggag gtgaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//