LOCUS BC003378 1207 bp mRNA linear HUM 16-DEC-2006 DEFINITION Homo sapiens high-mobility group box 1, mRNA (cDNA clone MGC:5223 IMAGE:2901382), complete cds. ACCESSION BC003378 VERSION BC003378.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1207) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1207) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: j Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31982879. FEATURES Location/Qualifiers source 1..1207 /db_xref="H-InvDB:HIT000031529" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5223 IMAGE:2901382" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1207 /gene="HMGB1" /gene_synonym="HMG3" /gene_synonym="SBP-1" /db_xref="GeneID:3146" /db_xref="HGNC:HGNC:4983" /db_xref="MIM:163905" CDS 77..724 /gene="HMGB1" /gene_synonym="HMG3" /gene_synonym="SBP-1" /codon_start=1 /product="high-mobility group box 1" /protein_id="AAH03378.1" /db_xref="GeneID:3146" /db_xref="HGNC:HGNC:4983" /db_xref="MIM:163905" /translation="MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA AYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE" BASE COUNT 419 a 195 c 293 g 300 t ORIGIN 1 gagacagcgc cggggcaagt gagagccgga cgggcactgg gcgactctgt gcctcgctga 61 ggaaaaataa ctaaacatgg gcaaaggaga tcctaagaag ccgagaggca aaatgtcatc 121 atatgcattt tttgtgcaaa cttgtcggga ggagcataag aagaagcacc cagatgcttc 181 agtcaacttc tcagagtttt ctaagaagtg ctcagagagg tggaagacca tgtctgctaa 241 agagaaagga aaatttgaag atatggcaaa ggcggacaag gcccgttatg aaagagaaat 301 gaaaacctat atccctccca aaggggagac aaaaaagaag ttcaaggatc ccaatgcacc 361 caagaggcct ccttcggcct tcttcctctt ctgctctgag tatcgcccaa aaatcaaagg 421 agaacatcct ggcctgtcca ttggtgatgt tgcgaagaaa ctgggagaga tgtggaataa 481 cactgctgca gatgacaagc agccttatga aaagaaggct gcgaagctga aggaaaaata 541 cgaaaaggat attgctgcat atcgagctaa aggaaagcct gatgcagcaa aaaagggagt 601 tgtcaaggct gaaaaaagca agaaaaagaa ggaagaggag gaagatgagg aagatgaaga 661 ggatgaggag gaggaggaag atgaagaaga tgaagatgaa gaagaagatg atgatgatga 721 ataagttggt tctagcgcag tttttttttc ttgtctataa agcatttaac ccccctgtac 781 acaactcact ccttttaaag aaaaaaattg aaatgtaagg ctgtgtaaga tttgttttta 841 aactgtacag tgtctttttt tgtatagtta acacactacc gaatgtgtct ttagatagcc 901 ctgtcctggt ggtattttca atagccacta accttgcctg gtacagtatg ggggttgtaa 961 attggcatgg aaatttaaag caggttcttg ttggtgcaca gcacaaatta gttatatatg 1021 gggatggtag ttttttcatc ttcagttgtc tctgatgcag cttatacgaa ataattgttg 1081 ttctgttaac tgaataccac tctgtaattg caaaaaaaaa aaaagttgca gctgttttgt 1141 tgacattctg aatgcttcta agtaaataca atttttttta ttaaaaaaaa aaaaaaaaaa 1201 aaaaaaa //