LOCUS BC002872 1142 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HLA-B associated transcript 2-like, mRNA (cDNA clone
IMAGE:3944379), complete cds.
ACCESSION BC002872
VERSION BC002872.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1142)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1142)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002872.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: c Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction, Similarity but not identity
to protein
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1142
/db_xref="H-InvDB:HIT000031255"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3944379"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1142
/gene="BAT2L"
/gene_synonym="LQFBS-1"
/gene_synonym="RP11-334J6.1"
/db_xref="GeneID:84726"
/db_xref="HGNC:HGNC:28121"
CDS 107..1126
/gene="BAT2L"
/gene_synonym="LQFBS-1"
/gene_synonym="RP11-334J6.1"
/codon_start=1
/product="BAT2L protein"
/protein_id="AAH02872.1"
/db_xref="GeneID:84726"
/db_xref="HGNC:HGNC:28121"
/translation="MSDRLGQITKGKDGKSKYSTLSLFDKYKGKSVDAIRSSVIPRHG
LQSLGKVAAARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSAT
ASQPPESLPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLNGKPVGHEGGLRG
SSRLLSFSPEEFPTLKAAGGQDKAGKEKGVLDLSYGPGPSLRPQNVTSWREGGGRHII
SATSLSTSPTELGSRNSSTGDGAPSSACTSDSKDPSLRPAQPVRKGASQFMGNVYHPP
TYHDMLPAFMCSPKSSENQGTVERGSFPLPQLRLEPRVPFRQFQMNDQDWNYGARLVN
MTFNE"
BASE COUNT 318 a 302 c 299 g 223 t
ORIGIN
1 gccgcccgac tgccatcgcc cggcccggcc gcgcccgcgg aaccagacca ggcagatcgg
61 gagcggtgcc gagaaaaatt tccttactag atgacatttc atcgcaatgt ccgatcgttt
121 ggggcaaatt accaagggca aggatgggaa aagcaagtac tcgactctca gcctgtttga
181 taagtataaa ggaaaatcag tagacgcgat tagatcctca gttattccta gacatggctt
241 acagagtctt gggaaagttg ctgcagcccg gcgcatgcca ccgcctgcaa acctgccaag
301 cttgaagtct gaaaacaaag gaaacgaccc caacatcgtg atagtaccca aggacgggac
361 gggatgggca aacaagcagg atcagcaaga cccaaagagt tccagtgcga cggcctctca
421 gccgccggag tcgctgccgc agccgggttt gcagaaatct gtctccaatt tgcagaaacc
481 gacacagtca atcagtcagg agaatacaaa ttcagtgcca ggtggaccaa agtcatgggc
541 acagctgaat ggaaagccag taggacacga aggtggttta aggggctcaa gccgactgtt
601 atccttctct cccgaggaat ttccgacgct gaaagcagct ggagggcagg acaaggctgg
661 caaagaaaag ggcgtcttag atctgtcgta tgggccagga ccaagcctcc gccctcagaa
721 tgtgacaagc tggagggagg gcggtgggcg acacataatt tctgccacgt ctctgagcac
781 ctccccaact gagctgggca gcaggaactc gagtacggga gatggagccc cctcctcggc
841 atgtaccagc gattctaagg acccctctct ccgcccggct cagcctgtcc gaaaaggggc
901 ttcacagttc atgggaaatg tataccaccc acctacatac catgacatgc ttcctgcttt
961 tatgtgttcg ccgaagtcat cagaaaacca gggtacagtg gaacgaggct cttttcccct
1021 tcctcagctc cgccttgaac ctcgagttcc ttttagacag ttccagatga atgaccaaga
1081 ctggaattat ggtgctagat tagtaaacat gacttttaat gagtaaaaaa aaaaaaaaaa
1141 aa
//