LOCUS BC002727 1467 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens syndecan binding protein (syntenin) 2, mRNA (cDNA
clone MGC:3734 IMAGE:3633262), complete cds.
ACCESSION BC002727
VERSION BC002727.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1467)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1467)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC002727.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: e Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38044113.
FEATURES Location/Qualifiers
source 1..1467
/db_xref="H-InvDB:HIT000031133"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3734 IMAGE:3633262"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1467
/gene="SDCBP2"
/gene_synonym="SITAC18"
/gene_synonym="ST-2"
/db_xref="GeneID:27111"
/db_xref="HGNC:HGNC:15756"
CDS 365..988
/gene="SDCBP2"
/gene_synonym="SITAC18"
/gene_synonym="ST-2"
/codon_start=1
/product="syndecan binding protein (syntenin) 2"
/protein_id="AAH02727.2"
/db_xref="GeneID:27111"
/db_xref="HGNC:HGNC:15756"
/translation="MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQG
LFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDR
PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKD
KKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA"
BASE COUNT 346 a 392 c 434 g 295 t
ORIGIN
1 gctgagagac agggctacgt ttcagggagg gaaacagatt cagcagcggc agcagctgga
61 gaaggtcgtg gagcagcacc ttgcctgcag ggtgttctga gaatcagcca tgtcatccct
121 gtacccatct ctagaggacc taaaagtgga ccaagccatt caggcccagg tcagagcctc
181 acccaagatg ccagccctgc cagtccaggc aacagccatt tccccaccac cagttttgta
241 cccaaacttg gcagaactgg aaaattatat gggtctttcc ctctccagcc aagaagtcca
301 ggagagcctg cttcagattc cagagggtga cagtacagcg gtctcgggcc ccgggcccgg
361 ccagatggtg gcaccggtaa ccgggtacag cctgggcgtg cggcgagctg agatcaagcc
421 cggggtgcgc gagatccacc tgtgcaagga cgagcgcggc aagaccgggc tgaggctgcg
481 gaaggtcgac caggggctct ttgtgcagtt ggtccaggcc aacacccctg catcccttgt
541 ggggctgcgc tttggggacc agctcctgca gattgacggg cgtgactgtg ctgggtggag
601 ctcgcacaaa gcccatcagg tggtgaagaa ggcatcaggc gataagattg tcgtggtggt
661 tcgggacagg ccgttccagc ggactgtcac catgcacaag gacagcatgg gccacgtcgg
721 cttcgtgatc aagaagggga agattgtctc tctggtcaaa gggagttctg cggcccgcaa
781 cgggctcctc accaaccact acgtgtgtga ggtagacggg cagaatgtta tcgggctgaa
841 ggacaaaaag atcatggaga ttctggccac ggctgggaac gttgtcaccc tgaccatcat
901 ccccagtgtg atctacgagc acatggtcaa aaagttgcct ccagtcctgc tccaccacac
961 catggaccac tccatcccag atgcctgaag ccactggagg gcagggcagg cagggggggc
1021 ttcccgccct cctgcagcaa agggcaacca ccctcggatg atgggttgca gccggcctgc
1081 tgcttaaggt gggggctgcc atgagggggg cgtgtccagg agggtgacca tgggatggct
1141 tatacacaca ggcctccttg gagcctcaga ctccaagcta ggctgaggct caggcagggc
1201 ccacaggcag ccgattctct tgtgctgatt taaatgctgg acacggaggc aggctgttta
1261 aacgctgctt aaagtcgcaa ctgggcccct ttcaagaaat tttgctctac caggaaaaca
1321 gttacacatt ttaagagaac agagctacgt tctttgtgag agctttttcc ttgccttgac
1381 ttgctctttg tcacagactg cataagttgt cagccttgac tatcttttga ataaagattt
1441 gattttaaac aaaaaaaaaa aaaaaaa
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