LOCUS BC001712 2262 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens VAMP (vesicle-associated membrane protein)-associated
protein B and C, mRNA (cDNA clone MGC:1832 IMAGE:3543354), complete
cds.
ACCESSION BC001712
VERSION BC001712.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2262)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2262)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: o Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40806212.
FEATURES Location/Qualifiers
source 1..2262
/db_xref="H-InvDB:HIT000030595"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1832 IMAGE:3543354"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2262
/gene="VAPB"
/gene_synonym="ALS8"
/gene_synonym="VAMP-B"
/gene_synonym="VAMP-C"
/gene_synonym="VAP-B"
/gene_synonym="VAP-C"
/db_xref="GeneID:9217"
/db_xref="HGNC:HGNC:12649"
/db_xref="MIM:605704"
CDS 179..910
/gene="VAPB"
/gene_synonym="ALS8"
/gene_synonym="VAMP-B"
/gene_synonym="VAMP-C"
/gene_synonym="VAP-B"
/gene_synonym="VAP-C"
/codon_start=1
/product="VAPB protein"
/protein_id="AAH01712.1"
/db_xref="GeneID:9217"
/db_xref="HGNC:HGNC:12649"
/db_xref="MIM:605704"
/translation="MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKV
KTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDM
EAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSS
LDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEE
GLSTRLLALVVLFFIVGVIIGKIAL"
BASE COUNT 651 a 486 c 554 g 571 t
ORIGIN
1 gctcgccggg caccgcggcc tcgccctcgc cctccgccca cccggtagag gacccccgcc
61 cgtgccccga ccggtccccg cctttttgta aaacttaaag cgggcgcagc attaacgctt
121 cccgccccgg tgacctctca ggggtctccc cgccaaaggt gctccgccgc taaggaacat
181 ggcgaaggtg gagcaggtcc tgagcctcga gccgcagcac gagctcaaat tccgaggtcc
241 cttcaccgat gttgtcacca ccaacctaaa gcttggcaac ccgacagacc gaaatgtgtg
301 ttttaaggtg aagactacag caccacgtag gtactgtgtg aggcccaaca gcggaatcat
361 cgatgcaggg gcctcaatta atgtatctgt gatgttacag cctttcgatt atgatcccaa
421 tgagaaaagt aaacacaagt ttatggttca gtctatgttt gctccaactg acacttcaga
481 tatggaagca gtatggaagg aggcaaaacc ggaagacctt atggattcaa aacttagatg
541 tgtgtttgaa ttgccagcag agaatgataa accacatgat gtagaaataa ataaaattat
601 atccacaact gcatcaaaga cagaaacacc aatagtgtct aagtctctga gttcttcttt
661 ggatgacacc gaagttaaga aggttatgga agaatgtaag aggctgcaag gtgaagttca
721 gaggctacgg gaggagaaca agcagttcaa ggaagaagat ggactgcgga tgaggaagac
781 agtgcagagc aacagcccca tttcagcatt agccccaact gggaaggaag aaggccttag
841 cacccggctc ttggctctgg tggttttgtt ctttatcgtt ggtgtaatta ttgggaagat
901 tgccttgtag aggtagcatg cacaggatgg taaattggat tggtggatcc accatatcat
961 gggatttaaa tttatcataa ccatgtgtaa aaagaaatta atgtatgatg acatctcaca
1021 ggtcttgcct ttaaattacc cctccctgca cacacataca cagatacaca cacacaaata
1081 taatgtaacg atcttttaga aagttaaaaa tgtatagtaa ctgattgagg gggaaaagaa
1141 tgatctttat taatgacaag ggaaaccatg agtaatgcca caatggcata ttgtaaatgt
1201 cattttaaac attggtaggc cttggtacat gatgctggat tacctctctt aaaatggcac
1261 ccttcctcgc ctgttggtgc tggcccttgg ggagctggag cccagcatgc tggggagtgc
1321 ggtcagctcc acacagtagt ccccacgtgg cccactcccg gcccaggctg ctttccgtgt
1381 cttcagttct gtccaagcca tcagctcctt gggactgatg aacagagtca gaagcccaaa
1441 ggaattgcac tgtggcagca tcagacgtac tcgtcataag tgagaggcgt gtgttgactg
1501 attgacccag cgctttggaa ataaatggca gtgctttgtt cacttaaagg gaccaagcta
1561 aatttgtatt ggttcatgta gtgaagtcaa actgttattc agagatgttt aatgcatatt
1621 taacttattt aatgtatttc atctcatgtt ttcttattgt cacaagagta cagttaatgc
1681 tgcgtgctgc tgaactctgt tgggtgaact ggtattgctg ctggagggct gtgggctcct
1741 ctgtctctgg agagtctggt catgtggagg tggggtttat tgggatgctg gagaagagct
1801 gccaggaagt gttttttctg ggtcagtaaa taacaactgt catagggagg gaaattctca
1861 gtagtgacag tcaactctag gttacctttt ttaatgaaga gtagtcagtc ttctagattg
1921 ttcttatacc acctctcaac cattactcac acttccagcg cccaggtcca agtctgagcc
1981 tgacctcccc ttggggacct agcctggagt caggacaaat ggatcgggct gcaaagggtt
2041 agaagcgagg gcaccagcag ttgtgggtgg ggagcaaggg aagagagaaa ctcttcagcg
2101 aatccttcta gtactagttg agagtttgac tgtgaattaa ttttatgcca taaaagacca
2161 acccagttct gtttgactat gtagcatctt gaaaagaaaa attataataa agcccccaaa
2221 ttaagaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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