LOCUS BC001712 2262 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C, mRNA (cDNA clone MGC:1832 IMAGE:3543354), complete cds. ACCESSION BC001712 VERSION BC001712.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2262) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2262) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis M. Staudt, M.D., Ph.D. cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: o Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40806212. FEATURES Location/Qualifiers source 1..2262 /db_xref="H-InvDB:HIT000030595" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1832 IMAGE:3543354" /tissue_type="Lymph, Burkitt lymphoma" /clone_lib="NIH_MGC_8" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2262 /gene="VAPB" /gene_synonym="ALS8" /gene_synonym="VAMP-B" /gene_synonym="VAMP-C" /gene_synonym="VAP-B" /gene_synonym="VAP-C" /db_xref="GeneID:9217" /db_xref="HGNC:HGNC:12649" /db_xref="MIM:605704" CDS 179..910 /gene="VAPB" /gene_synonym="ALS8" /gene_synonym="VAMP-B" /gene_synonym="VAMP-C" /gene_synonym="VAP-B" /gene_synonym="VAP-C" /codon_start=1 /product="VAPB protein" /protein_id="AAH01712.1" /db_xref="GeneID:9217" /db_xref="HGNC:HGNC:12649" /db_xref="MIM:605704" /translation="MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKV KTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDM EAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSS LDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEE GLSTRLLALVVLFFIVGVIIGKIAL" BASE COUNT 651 a 486 c 554 g 571 t ORIGIN 1 gctcgccggg caccgcggcc tcgccctcgc cctccgccca cccggtagag gacccccgcc 61 cgtgccccga ccggtccccg cctttttgta aaacttaaag cgggcgcagc attaacgctt 121 cccgccccgg tgacctctca ggggtctccc cgccaaaggt gctccgccgc taaggaacat 181 ggcgaaggtg gagcaggtcc tgagcctcga gccgcagcac gagctcaaat tccgaggtcc 241 cttcaccgat gttgtcacca ccaacctaaa gcttggcaac ccgacagacc gaaatgtgtg 301 ttttaaggtg aagactacag caccacgtag gtactgtgtg aggcccaaca gcggaatcat 361 cgatgcaggg gcctcaatta atgtatctgt gatgttacag cctttcgatt atgatcccaa 421 tgagaaaagt aaacacaagt ttatggttca gtctatgttt gctccaactg acacttcaga 481 tatggaagca gtatggaagg aggcaaaacc ggaagacctt atggattcaa aacttagatg 541 tgtgtttgaa ttgccagcag agaatgataa accacatgat gtagaaataa ataaaattat 601 atccacaact gcatcaaaga cagaaacacc aatagtgtct aagtctctga gttcttcttt 661 ggatgacacc gaagttaaga aggttatgga agaatgtaag aggctgcaag gtgaagttca 721 gaggctacgg gaggagaaca agcagttcaa ggaagaagat ggactgcgga tgaggaagac 781 agtgcagagc aacagcccca tttcagcatt agccccaact gggaaggaag aaggccttag 841 cacccggctc ttggctctgg tggttttgtt ctttatcgtt ggtgtaatta ttgggaagat 901 tgccttgtag aggtagcatg cacaggatgg taaattggat tggtggatcc accatatcat 961 gggatttaaa tttatcataa ccatgtgtaa aaagaaatta atgtatgatg acatctcaca 1021 ggtcttgcct ttaaattacc cctccctgca cacacataca cagatacaca cacacaaata 1081 taatgtaacg atcttttaga aagttaaaaa tgtatagtaa ctgattgagg gggaaaagaa 1141 tgatctttat taatgacaag ggaaaccatg agtaatgcca caatggcata ttgtaaatgt 1201 cattttaaac attggtaggc cttggtacat gatgctggat tacctctctt aaaatggcac 1261 ccttcctcgc ctgttggtgc tggcccttgg ggagctggag cccagcatgc tggggagtgc 1321 ggtcagctcc acacagtagt ccccacgtgg cccactcccg gcccaggctg ctttccgtgt 1381 cttcagttct gtccaagcca tcagctcctt gggactgatg aacagagtca gaagcccaaa 1441 ggaattgcac tgtggcagca tcagacgtac tcgtcataag tgagaggcgt gtgttgactg 1501 attgacccag cgctttggaa ataaatggca gtgctttgtt cacttaaagg gaccaagcta 1561 aatttgtatt ggttcatgta gtgaagtcaa actgttattc agagatgttt aatgcatatt 1621 taacttattt aatgtatttc atctcatgtt ttcttattgt cacaagagta cagttaatgc 1681 tgcgtgctgc tgaactctgt tgggtgaact ggtattgctg ctggagggct gtgggctcct 1741 ctgtctctgg agagtctggt catgtggagg tggggtttat tgggatgctg gagaagagct 1801 gccaggaagt gttttttctg ggtcagtaaa taacaactgt catagggagg gaaattctca 1861 gtagtgacag tcaactctag gttacctttt ttaatgaaga gtagtcagtc ttctagattg 1921 ttcttatacc acctctcaac cattactcac acttccagcg cccaggtcca agtctgagcc 1981 tgacctcccc ttggggacct agcctggagt caggacaaat ggatcgggct gcaaagggtt 2041 agaagcgagg gcaccagcag ttgtgggtgg ggagcaaggg aagagagaaa ctcttcagcg 2101 aatccttcta gtactagttg agagtttgac tgtgaattaa ttttatgcca taaaagacca 2161 acccagttct gtttgactat gtagcatctt gaaaagaaaa attataataa agcccccaaa 2221 ttaagaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa //