LOCUS BC000961 2058 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens degenerative spermatocyte homolog 1, lipid desaturase
(Drosophila), mRNA (cDNA clone MGC:5079 IMAGE:3450936), complete
cds.
ACCESSION BC000961
VERSION BC000961.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2058)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2058)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Feb 14, 2001 this sequence version replaced BC000961.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: h Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21614503.
FEATURES Location/Qualifiers
source 1..2058
/db_xref="H-InvDB:HIT000030029"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5079 IMAGE:3450936"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2058
/gene="DEGS1"
/gene_synonym="Des-1"
/gene_synonym="DES1"
/gene_synonym="FADS7"
/gene_synonym="MGC5079"
/gene_synonym="MIG15"
/gene_synonym="MLD"
/db_xref="GeneID:8560"
/db_xref="HGNC:HGNC:13709"
CDS 112..1083
/gene="DEGS1"
/gene_synonym="Des-1"
/gene_synonym="DES1"
/gene_synonym="FADS7"
/gene_synonym="MGC5079"
/gene_synonym="MIG15"
/gene_synonym="MLD"
/codon_start=1
/product="degenerative spermatocyte homolog 1, lipid
desaturase (Drosophila)"
/protein_id="AAH00961.1"
/db_xref="GeneID:8560"
/db_xref="HGNC:HGNC:13709"
/translation="MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLI
WIIIMMVLTQLGAFYIVKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKA
MWNRWFGMFANLPIGIPYSISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKF
IWVILQPLFYAFRPLFINPKPITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLL
GLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLV
RKIAAEYYDNLPHYNSWIKVLYDFVMDDTISPYSRMKRHQKGEMVLE"
BASE COUNT 598 a 441 c 429 g 590 t
ORIGIN
1 cacagccggc cgacaccaca ccagccgggg agccgccgcc gccgccgcca cctctgagca
61 gccggctggg agcgagagcc gacagctagt ctgcaagcca ccgctgtcgc catggggagc
121 cgcgtctcgc gggaagactt cgagtgggtc tacaccgacc agccgcacgc cgaccggcgc
181 cgggagatcc tggcaaagta tccagagata aagtccttga tgaaacctga tcccaatttg
241 atatggatta taattatgat ggttctcacc cagttgggtg cattttacat agtaaaagac
301 ttggactgga aatgggtcat atttggggcc tatgcgtttg gcagttgcat taaccactca
361 atgactctgg ctattcatga gattgcccac aatgctgcct ttggcaactg caaagcaatg
421 tggaatcgct ggtttggaat gtttgctaat cttcctattg ggattccata ttcaatttcc
481 tttaagaggt atcacatgga tcatcatcgg taccttggag ctgatggcgt cgatgtagat
541 attcctaccg attttgaggg ctggttcttc tgtaccgctt tcagaaagtt tatatgggtt
601 attcttcagc ctctctttta tgcctttcga cctctgttca tcaaccccaa accaattacg
661 tatctggaag ttatcaatac cgtggcacag gtcacttttg acattttaat ttattacttt
721 ttgggaatta aatccttagt ctacatgttg gcagcatctt tacttggcct gggtttgcac
781 ccaatttctg gacattttat agctgagcat tacatgttct taaagggtca tgaaacttac
841 tcatattatg ggcctctgaa tttacttacc ttcaatgtgg gttatcataa tgaacatcat
901 gatttcccca acattcctgg aaaaagtctt ccactggtga ggaaaatagc agctgaatac
961 tatgacaacc tccctcacta caattcctgg ataaaagtac tgtatgattt tgtgatggat
1021 gatacaataa gtccctactc aagaatgaag aggcaccaaa aaggagagat ggtgctggag
1081 taaatatcat tagtgccaaa gggattcttc tccaaaactt tagatgataa aatggaattt
1141 ttgcattatt aaacttgaga ccagtgatgc tcagaagctc ccctggcaca atttcagagt
1201 aagagctcgg tgataccaag aagtgaatct ggcttttaaa cagtcagcct gactctgtac
1261 tgctcagttt cactcacagg aaacttgtga cttgtgtatt atcgtcattg aggatgtttc
1321 actcatgtct gtcattttat aagcatatca tttaaaaagc ttctaaaaag ctatttcgcc
1381 aggcacggtg gctcatgcct ataatcccag cactttggga ggccaaggtg ggtggatcac
1441 ctgaggtcag gagttcgaga ccagcctggc caacacggtg aaaccccatc tctactaaaa
1501 atgcaaaaat tagccgggcg tggcggcaca tgcctgtaat cccagctaca tgggaggctg
1561 aggtgggaga attgcttgaa cccaggaggc ggaggcagag gctgcagtga cccaagattg
1621 tgccactgca ctccaccctg ggcaacagag caagacccca tctcaaaaat aaataaatat
1681 atataaaaaa taaaaagcta tttctagttt atttcactat aaagttttgc tttattaaaa
1741 agctaataaa cagctattaa tcacagtgta ttagtatttg ttacattttt gtatttcact
1801 atctttatac tatataatat ggttacttgg gtaccggggg aactttaaaa tttcatctca
1861 aaaataattt ttaaaaagcc tgaggtatga tatagcataa aagattgaga tgaaaatata
1921 tttccctgta agctgaatta ctcatttaaa aattttaact tctatatggg acccgaatta
1981 gacactgctg aatcctgtac agccttactc ataaataaag tacttactga atttccacca
2041 ttcaaaaaaa aaaaaaaa
//