LOCUS BC000719 2803 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ATG4 autophagy related 4 homolog B (S. cerevisiae), mRNA (cDNA clone MGC:1353 IMAGE:3504267), complete cds. ACCESSION BC000719 VERSION BC000719.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2803) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2803) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC000719.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 7 Row: i Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 47132612. FEATURES Location/Qualifiers source 1..2803 /db_xref="H-InvDB:HIT000029864_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1353 IMAGE:3504267" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2803 /gene="ATG4B" /gene_synonym="AUTL1" /gene_synonym="MGC1353" /db_xref="GeneID:23192" /db_xref="HGNC:HGNC:20790" CDS 8..1189 /gene="ATG4B" /gene_synonym="AUTL1" /gene_synonym="MGC1353" /codon_start=1 /product="ATG4 autophagy related 4 homolog B (S. cerevisiae)" /protein_id="AAH00719.1" /db_xref="GeneID:23192" /db_xref="HGNC:HGNC:20790" /translation="MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILS DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRK RQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDT WSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSP WRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQ QVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILS L" BASE COUNT 561 a 783 c 847 g 612 t ORIGIN 1 tgggaagatg gacgcagcta ctctgaccta cgacactctc cggtttgctg agtttgaaga 61 ttttcctgag acctcagagc ccgtttggat actgggtaga aaatacagca ttttcacaga 121 aaaggacgag atcttgtctg atgtggcatc tagactttgg tttacataca ggaaaaactt 181 tccagccatt ggggggacag gccccacctc ggacacaggc tggggctgca tgctgcggtg 241 tggacagatg atctttgccc aagccctggt gtgccggcac ctaggccgag attggaggtg 301 gacacaaagg aagaggcagc cagacagcta cttcagcgtc ctcaacgcat tcatcgacag 361 gaaggacagt tactactcca ttcaccagat agcgcaaatg ggagttggcg aaggcaagtc 421 cataggccag tggtacgggc ccaacactgt cgcccaggtc ctgaagaagc ttgctgtctt 481 cgatacgtgg agctccttgg cggtccacat tgcaatggac aacactgttg tgatggagga 541 aatcagaagg ttgtgcagga ccagcgttcc ctgtgcaggc gccactgcgt ttcctgcaga 601 ttccgaccgg cactgcaacg gattccctgc cggagctgag gtcaccaaca ggccgtcgcc 661 atggagaccc ctggtacttc tcattcccct gcgcctgggg ctcacggaca tcaacgaggc 721 ctacgtggag acgctgaagc actgcttcat gatgccccag tccctgggcg tcatcggagg 781 gaagcccaac agcgcccact acttcatcgg ctacgttggt gaggagctca tctacctgga 841 cccccacacc acgcagccag ccgtggagcc cactgatggc tgcttcatcc cggacgagag 901 cttccactgc cagcacccgc cgtgccgcat gagcatcgcg gagcttgacc cgtccatcgc 961 tgtggggttt ttctgtaaga ctgaagatga cttcaatgat tggtgccagc aagtcaaaaa 1021 gctgtctctg ctcggaggtg ccctgcccat gtttgagctg gtggagcagc agccttcaca 1081 tctggcctgc cccgacgtcc tgaacctgtc cctagattct tctgatgtag agcgactgga 1141 aagattcttc gactcagaag atgaagactt tgaaatcctg tccctttgaa aatcctgggg 1201 tcgggggtgg cacctgtgag agcctggggc tcctggtgcc gctgcgtttc atccatcccg 1261 cccgctcgcc tgccgagggc tgcgccccgt gctgcctccc cccagagggc cacccgctgt 1321 gctcgtggac tgaggctgcg ctgcccggga ggccttactg cttggtgtca gactgcccag 1381 ctcagagtgc ccgtcagggc ctgtgcatcc gcacgcggag ccgtctgtta ggagcttcca 1441 gagcgttctc tcgacactgc cagccccgtg ttagcacctg ggcctcagtc ccacttgctc 1501 ccaggcgccg gttctgtggt tggtttggaa ttaaagtcct gtttgaagtt gtcagacaca 1561 gacatgaatt tctggggcgc tccctgagtc agagtctcag aagacctgtg caggctggcg 1621 tgagaggagc ggcagccaca ctgcggcccc acgcccaagg attgggctgc tctcgagggg 1681 ggcgcgccca ccgctgtgtc ctctctgccc agcctggctt accaagggct acctcagtgg 1741 gagatgaggt tggaggaacg aaggcgaggt tcctccttgc tttggggaga aaagtattca 1801 ggaagtgggt gtgtgggaaa cctgaagatg gcgtgcacag gacacagcgt ggtcggcctg 1861 ggcagaaggg cggctggctg tcctggagct gctgctggag cctgccctca gagtgtccct 1921 ttccagtgct gtggcattct gtggcagctt ccccaggtgt ggtgacgggg ggggcggggc 1981 ctccacctgt gacagtcagg cttgagggtg gacggcgtgc ctctcccagg agccttcccc 2041 atgtccttgc cttgctgaga attgccctcc catgccgctg aggtgttagg tggtttaggg 2101 ccaaaagggg aaaaccactt gagtcttgtg gtgtgtggtg ggcagacacc acagggtggc 2161 atcacctggt ggcatttcca gaacctcagc cccgattcca gcacccacca ccgcctgacc 2221 ctgtgtaacc tgctgtcccg ggtcccagag tgcactctgc cccgctgctc tgctgcctgt 2281 cctgggaaag tagctttgcc ccactaggaa atgtaaacag gagggcttgg ggagcgtggg 2341 cacctttctc atgagcagct actgcggcgt tggcaggact cgctgctgct gctgctgctg 2401 cttgtgtagg tcggggagcc ggagatcccc gaggacgcgc gccggacagt cggcactgac 2461 cggcccacct ggtagcagag gacaccccca gccccccaag cattgaagac atagtgtatt 2521 tcctcgtatc ctttctccct tgggtgtagt tggggtgggg aagcagggaa ggctggtgcg 2581 atctccattc cttgggctcc acgtccgagt tcatggtgcg ccgctgtgct gggagctgca 2641 gtgggaatgt gtgggacacc ttgaccaaag gggagctttg tctcgtgtgt tttgaaaaag 2701 gcttaatgaa gagaatgttg ttcattctta gtagtatagt ttgcaattct taatggcaaa 2761 taataagttt cagtagaaaa caaaaaaaaa aaaaaaaaaa aaa //