LOCUS BC000357 1982 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sorting nexin 1, mRNA (cDNA clone MGC:8664 IMAGE:2964409), complete cds. ACCESSION BC000357 VERSION BC000357.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1982) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1982) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC000357.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 1 Row: o Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23111033. FEATURES Location/Qualifiers source 1..1982 /db_xref="H-InvDB:HIT000029549" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8664 IMAGE:2964409" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1982 /gene="SNX1" /gene_synonym="HsT17379" /gene_synonym="MGC8664" /gene_synonym="SNX1A" /db_xref="GeneID:6642" /db_xref="HGNC:HGNC:11172" /db_xref="MIM:601272" CDS 11..1579 /gene="SNX1" /gene_synonym="HsT17379" /gene_synonym="MGC8664" /gene_synonym="SNX1A" /codon_start=1 /product="sorting nexin 1" /protein_id="AAH00357.1" /db_xref="GeneID:6642" /db_xref="HGNC:HGNC:11172" /db_xref="MIM:601272" /translation="MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGE DIFTGAAVVSKHQSPKITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQ NNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMN AYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIG MTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGT QTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLV NHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLL AELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLA KYWEAFLPEAKAIS" BASE COUNT 580 a 464 c 500 g 438 t ORIGIN 1 gtggaagaag atggcgtcgg gtggtggtgg ctgtagcgct tcggagagac tgcctccgcc 61 cttccccggc ctggagccgg agtccgaggg ggcggccggg ggatcagaac ccgaggctgg 121 ggacagcgac accgaggggg aggacatttt caccggcgcc gcggtggtca gtaaacatca 181 gtctccaaag ataactacat cccttcttcc catcaacaat ggctccaaag aaaatgggat 241 ccatgaagaa caagaccaag agccacagga tctctttgca gatgccacag tggagctatc 301 cttggacagc acacaaaata atcagaagaa ggtgctagcc aaaacactca tttctcttcc 361 tcctcaggaa gccacaaatt cttcgaagcc ccagccaacc tatgaggagc tagaggaaga 421 agaacaggag gatcaatttg atttgacagt cggtataact gatcctgaga agatagggga 481 tggtatgaat gcatatgtag cctacaaagt tacaacacag acaagcttac cattgttcag 541 aagcaaacag tttgcagtaa aaagaagatt tagtgacttt ctgggtcttt atgagaagct 601 ttccgagaag cactctcaga atggcttcat tgtccctcca cccccggaga agagcctcat 661 agggatgaca aaagtgaaag ttgggaagga agattcttct tctgcagaat ttcttgaaaa 721 acggagggcc gctttagaaa ggtaccttca gaggattgta aatcatccta ccatgttaca 781 ggaccctgac gtcagagagt tcttggaaaa agaagagctg ccacgtgccg tgggtaccca 841 gacattgagt ggtgctggtc tcctcaagat gttcaacaaa gccacagatg ccgtcagcaa 901 aatgaccatc aagatgaatg aatcagacat ttggtttgag gagaagctcc aggaggtaga 961 gtgtgaggag cagcgcttac ggaaactgca tgctgttgta gaaactctag tcaaccatag 1021 gaaagagcta gcgctgaaca cagcccagtt tgcaaagagt ctagccatgc ttgggagctc 1081 tgaggacaac acggcattgt cacgggcact ctcccagctg gctgaggtgg aagaaaaaat 1141 tgagcagctc caccaggaac aggccaacaa tgacttcttc ctccttgctg agctcctgag 1201 tgactacatt cgcctcctgg ccatagtccg cgctgccttc gaccagcgca tgaagacatg 1261 gcagcgctgg caggatgccc aagccacact gcagaagaag cgggaggccg aggctcggct 1321 gctgtgggcc aacaagcctg ataagctgca gcaggccaag gacgagatcc tcgagtggga 1381 gtctcgggtg actcaatatg aaagggactt cgagaggatt tcaacagtgg tccgaaaaga 1441 agtgatacgg tttgagaaag agaaatccaa ggacttcaag aaccacgtga tcaagtacct 1501 tgagacactc ctttactcac agcagcagct ggcaaagtac tgggaagcct tccttcctga 1561 ggcaaaggcc atctcctaat ggaccaagga ccccagagcc cacctgtgtg acgctgcctt 1621 tttatacact gtcctcctcc accttgatgg acccctagtg atgcatcctg cctaggctgg 1681 acttaacccc ttcctccctg tccccacgac caactgtccc cagttactct aaccgttatt 1741 tcatttagct tccatatata ttttcttacc taagagaata gtttcctgct ttaagcaaaa 1801 gacctacaat aggtggtgga attatgggat ggggtggagt attgatataa atatataaat 1861 acaaatgtat atttttcagg atgtggttta ggaactggga ataacgtttt ctgttactcc 1921 tgatggtgcc atgaaaaggt tatgtaataa aatattttaa aatcaaaaaa aaaaaaaaaa 1981 aa //