LOCUS BB575732 1097 bp mRNA linear EST 08-SEP-2005
DEFINITION Mus musculus 10 days neonate head cDNA, RIKEN full-length enriched
library, clone:5530401I05, 5' end partial sequence.
ACCESSION BB575732
VERSION BB575732.2
KEYWORDS EST; 5'-end sequence (5'-EST).
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1097)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T.,
Hara,A., Hiramoto,K., Hori,F., Ishii,Y., Ito,M., Kawai,J.,
Konno,H., Kouda,M., Koya,S., Matsuyama,T., Miyazaki,A., Nomura,K.,
Ohno,M., Okazaki,Y., Okido,T., Saito,R., Sakai,C., Sakai,K.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F.,
Takeda,Y., Tanaka,T., Toya,T., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS Kondo,S., Shinagawa,A., Saito,T., Kiyosawa,H., Yamanaka,I.,
Aizawa,K., Fukuda,S., Hara,A., Itoh,M., Kawai,J., Shibata,K. and
Hayashizaki,Y.
TITLE Computational Analysis of Full-Length Mouse cDNAs Compared with
Human Genome Sequences
JOURNAL Mamm. Genome 12, 673-677 (2001)
REFERENCE 5
AUTHORS Konno,H., Fukunishi,Y., Shibata,K., Itoh,M., Carninci,P.,
Sugahara,Y. and Hayashizaki,Y.
TITLE Computer-based methods for the mouse full-length cDNA
encyclopedia: real-time sequence clustering for construction of a
nonredundant cDNA library
JOURNAL Genome Res. 11, 281-289 (2001)
REFERENCE 6
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 7
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT Please visit our web site (http://www.osc.riken.jp/) for further
details.
cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
FEATURES Location/Qualifiers
source 1..1097
/clone="5530401I05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="taxon:10090"
/dev_stage="10 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
BASE COUNT 213 a 255 c 315 g 309 t
ORIGIN
1 gaatacatct ccaactcctc tcctgagtct ctctcctcac tgcacccgaa tcctctctac
61 taacaccatg ggctgtggct gtggaggttg tggcgactgt ggcagctgtg gcggctgtgg
121 cggctgtggc ggctgtggcg gctgtggtgg ctgtggcggc tgtggcggct gtagcggctg
181 tggcggctgt ggcggctgta gcggctgtgg cggctgtagc agctgtacca cctgcagatg
241 ctaccgctgc tgtggtggtt gctgtggctg ctgtggttgt ggttgctgtg gctgctgtgg
301 ctgtggttgc tgtggctgct gtggctgtgg ctgcggtggc tctggcttgt gcggcttgtt
361 gctccggcgt cctgtcgtgc cgtcgttgct gtcctgtgcc ttctgcatct cgtgcgnatt
421 gtgttgttgc tccccgagct cgcgtcgctc catagtgtcg ttgtagcctg tgcttcggct
481 gtttgctgct gaactggtcg tgctacgaaa tggctgtgcc acaaagatgt gcgtccacag
541 agttgctcaa catcgtctac gatgtgttct gtgcattatn tgtattgatc gtntcgtgtc
601 ttctctgtca ccgtgtctga tgtgcagttc tcatctgaat tccatcaatc gaagagctca
661 cagngaaaat tgtcactgag gctgtgcact ctatcaggac cgncaagaac ttagttggcc
721 agggcgaagt ttagttgtga tgctacacgc ctctcgctgc gttcttcata atgtaagata
781 ttgatatcaa ataaatgaaa taaaataact cgatgcatag ttatctgggc gtcattgctc
841 tagtgcatca tggtattgct gctgtgatga atctagcata agagagatga ctagtggcta
901 gatgagtatg ctttcgtgac gcagtgtata gtgtgtgtgc gcgccctcgc tcctcggcac
961 aacatagaaa ggaaaacaaa aaattctcag ctaaaagaaa aaacatatca atcgtcctaa
1021 tttatgtcaa cagacaaaaa agagtacaaa tgaaaaaaaa aaaagctacg gcgctgtccc
1081 cgacacggca ccctgcg
//