LOCUS BABO01000001 1321 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 1, cultivar: Koshihikari. ACCESSION BABO01000001 BABO01000000 VERSION BABO01000001.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 1321) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..1321 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 1" /organism="Oryza sativa Japonica Group" BASE COUNT 388 a 340 c 307 g 286 t ORIGIN 1 aaccctaaac cctaaaccct aaaccctaaa ccctaaaccc taaaccctaa accctaaccc 61 taaaccctaa ccctaaaccc taaaccctaa accctaaacc ctaaacccta aacagctgac 121 agtacgatag atccacgcga gaggaacagg agagacaacg ggatccaggc gccagcgacg 181 gatccgggcg agaggggagt ggagatcatg gatccgtgcg ggaggggaag aagtcgccga 241 atccgaccct cccatcgcca tcgacagtag gtctgcgcga gaggggcacc ggcgctggct 301 ctgagcgaga tgcaacgccg gccggcttgg agagtaactc aagagagaca gaatggaaga 361 tagagaacaa gagagtgaga ggataaggat atagaccaga ccacacaatt ttctcttctt 421 tttaactttg tattaagatc ttttatggaa catcttttat tgttgatatc aaaataactg 481 aaacttatac tttaatattt tttgagacaa aaagtaacaa tcgtaaaaaa aagttccacg 541 agagttaccc caccacccat gtctcgagcc gaccagatct gccgcccacg acccgagtca 601 tcgttggatc caccacccac aacccgcgac cgagctacgc ctcctgtgga ttgatgccac 661 tgccctgagc ttcactgccg gtactgtcgc tcgcgacccg agctccgccg ctggtaccgt 721 cgcccacaac tcaagctgtg ttgccactag agaaaaagga ggcgagagcg agggcaaaac 781 gaggcaaggc gtggcgtgac atggtgtgac tggttggtca attagccgac aatggatcca 841 ccgcccatga accgagccac cgttggatcc gccacccgca gattcggctg tcccctctcc 901 ctcaacttat tcttcctctc ttgattcaac gggaggagtg gcaactgacg gcaacagagc 961 tcgcctcatg ggcgatggaa ccagcggcga agctcggggc ggaggggttg agccacatga 1021 ggcgatggcg acaatgaggc gagacatggc gtggctggct gttacatttt gttttgatga 1081 aaagcataac catgcggatg atatttttat tatagactag agatgattat tgaatagaca 1141 tgctcttaac catttttaac tctaattcca cctacactat gaatattaga aaaaaaatac 1201 aatgtatact cttaagaagt ttgcgctatc atagccatca tactcattaa aacatttttc 1261 ttcacatgtt gcaacgcatg ggcattttgc tagttagaga ataaaaataa atttgtaggt 1321 a // LOCUS BABO01000002 344 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 2, cultivar: Koshihikari. ACCESSION BABO01000002 BABO01000000 VERSION BABO01000002.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 344) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..344 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 2" /organism="Oryza sativa Japonica Group" BASE COUNT 113 a 65 c 72 g 94 t ORIGIN 1 tgtgttctcg gtgacttaaa agccaatgct taaaaataaa ctacgttaaa aatatcttaa 61 aatcaatatt aaaattaagt ttgaaaattt aaattttggc tttttctttg actgaatagg 121 ccatctgatg gaagctgaat aagccatccg atgggagctg tgacagtgat gaaaaggaga 181 gcagtaagag agcagtaaga gcatcccagc agctcctcta tctaggcatc catccgatat 241 ttggagtatg gaggagaaaa acagtgctcc agcagagtct ccatcacatg cttcattttt 301 ggaggtcctc caaatctagc ccttcccaag ccaaatatgg aggt // LOCUS BABO01000003 8742 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 3, cultivar: Koshihikari. ACCESSION BABO01000003 BABO01000000 VERSION BABO01000003.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 8742) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..8742 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 3" /organism="Oryza sativa Japonica Group" BASE COUNT 2513 a 1629 c 1808 g 2792 t ORIGIN 1 ctcaactacc cacttcccaa gatttttttt gagtggtgaa aggtgagagg aataggagta 61 aaaatgtgtg gtagttgaaa aatattacta aaatatagga tgttggtata tgtaggatgt 121 aatatgaatg atctgttgga gtgaaaagtt atatagagtg gaaatctttt taaatggcca 181 tccaaatgag agtatgaaat ttagatgagc tggtggggat gctctaagag aacgagagaa 241 gcacagagca gataaaccac acccacaggc accaccgtcc ttgttggtaa tgaagaagac 301 gagacgacga cttccccact aggaaacacg acggaggcgg agatgatcga cggcggagag 361 agctacagaa acatcgatgc ctcctgtcca atccccccat cccattcggt agttggattg 421 aagactaccg aataagagaa gcaggcaggc agacaaaccc ttgaaccaag gagtcctcgc 481 tgaggaagct ttggatccac gacgcagcta tggcctcccc gcccaccagg ccgccagcca 541 caaccagctg actaggtagg cttcctaggt agggatccca tcccttcgat tccctactcc 601 ctcccccgat tgatttgatt tgatttgatt taattcgatt gcctgctttt caggtcgcat 661 gcatcatcag atttcaatct cccttcgttc cctgtcccta atccaatacc aatagggagc 721 aatcagctgc tcctcgacgg cgagggagat gtcgtcggcc gcgggccaag acaacggaga 781 taccgctggg gactacatca agtggatgtg cggcgccggt ggccgtgcgg gcggcgccat 841 ggccaacctc cagcgcggcg ttggctccct cgtccgtgac attggcgacc cctgcctcaa 901 cccatccccc gttaaggttc gcctactcct actctagctc catatggata tggattcgat 961 tagctgtcta cattctatgc catcaatttg ttttccatca cttctcatta tacatctcca 1021 ttgctctcta aattaaggct tctctagctc tatcctatat atatactagt actccgtata 1081 tgattctgct tcatcactta tttattcatc atcataccgt gaagctgtat aagtcctgtt 1141 atttgtcatt tggcatatgt tgtatagata acactttcag cccagggact ttctattgcc 1201 acttttatac atatacaatc aacatttagc atatgtatat cctgtaccgc tcagttgtac 1261 tgctgctttg aagataatgt ttgcaaaaca tatgagctca cacacgaggc tagatgctgc 1321 ataggctgca caatggggta gccattttga tacttcttaa tgctatttat gctggtccaa 1381 atgttcattg gtagcctcag gcagagaatt ttagggagat attatgtcaa actccctgga 1441 ttcactatga ttatacaata ttacccattc aatccattca aataaatttc caggtcaact 1501 cacatattgt actgaaagaa gactaatttg cactaatcat atccttttat ccaccagagt 1561 atatgagatt gtcttctata tgcaatttac ttcatatcga catttttctg cagaattgca 1621 aaactgacgc cttgttttcc atctggaatt gtgcagggga gcaaaatgct caaaccggaa 1681 aaatggcaca catgttttga taatgatgga aaggtcatag gtttccgtaa agccctaaaa 1741 ttcattgtct taggggtgag ttaattgttt cttttgtgct tcaaaaactt gttttttcat 1801 gtattttagc tgttgaaggg tgtggatttt tttttcagtc ttaatacatt accttttaga 1861 gcatgatgcc ccacgcgcca tttgtgaatg tgtaaaatag ggaagatcaa atagaacgtg 1921 acaactgttt attttattac catgatcatt gttctctttg agagtgtctg ctttggaaat 1981 ttcaaagaaa ttaatgcata tgattgcgta gctctagttt ttcttaaaaa aataagcggc 2041 taggctcttt atactattat gtcacagagt gtttgccttt tacctgtgta tgtagctagg 2101 cataaacatt tgtttgtggg taaatacaaa aaaaaatcca atgtgtagaa actgcttata 2161 aatacataaa agttacataa atacataact gcttcaaata agcaagattt gaacatacct 2221 tcacataagc tttcccctaa ctgaaaagcc atttggtata accttataga aattagatat 2281 agtggagatg tggaatgagc tgctatcaag tcttgtttcg tgaaagcaaa ctgacacggt 2341 ctccacagca aacacgtcca cagctttgca attagtatct ttataggaag gtcaatcaga 2401 gttcattggc catatcttgg aaaaaaaagg catcagattt tagtttaatt atgtctatat 2461 tttaggcatg gattattgat catttttgca gcagactaag tttaatgcat gtagttattt 2521 tccttgatta gtgattagtg ttgttatttt ctatacacca ctggcactga tagatgtgct 2581 ccatgctttg caatgcatca aaattatcat atcgtgccta actcatgctt tgcacagata 2641 tcattttttt gtgttctggc actatctaaa gaattgtcta taaactagga acaataagat 2701 cgcatcgtac tattcttcac attaaaacat ttcttacccc caaaattgat gtgcagggtg 2761 tggatcccac tattcgagct gaagtttggg aatttcttct tggctgctat gccttgagta 2821 gtacctcaga gtataggagg aaactaagag ctgttagaag gtttgacact ttcctgtttt 2881 cagtaccagg ataccttttt tgtacaagca taagaccgta agagcataaa tgaattgcat 2941 ttattatcta gaataaaatc atgaatgtta cagttatgta gtactccctc cattccaata 3001 tataaggatt tcaaggattc aaattttgta ccacaatata aggatttctg cactgattcc 3061 cataataccc atcatttcag tgattcccaa accaatcaaa tgcatagaaa gggaaaagaa 3121 tcttttgacc taaccttggt attggctaaa caacctagaa atctttatat tttggaaagg 3181 agggagtagg tattaatttg tttgtttttt gtttattgta ctaaaactga acttctaggt 3241 aaatattcct atcctttaca ttttccttgt gttatttata accatgtgtg cagaatggaa 3301 aatgatatta aaagtttaaa acaaatgtgt tgctatgttt atctggagta ccaatctcaa 3361 tctttttcag gcactcaaag taacttgatt agggtttagg gtttacccct tttcattgtg 3421 ctacctccta tacacattgt tggggggatg aattggtggc atcagtactc atagtttgtc 3481 tatgtaacat ctacttgtgc tgatgttgta tgatccattt ggtttagatg gcttgataag 3541 taccccgtgc ctgcacacaa caatatgaca gattatatca atacatctag ggtagaggta 3601 aatgaaagac tgagattcta gatattgcat acaattccta ggtatttgtg gtcatggcct 3661 gtgggtgata tcgggttgga tatgatccac caaacctgga gcagaaaatt tctaagacta 3721 gttgccagaa tagaattctc ttggaaattt aacagttcca aacagcctgt tcacaaaccc 3781 attatccatt cactagcagg tgctggacag aaaatatgtt gttcataggg gtttgaacct 3841 gggacattaa attctgtagt acgtggtagc caacagtgcc aatggctctt tctttgtaat 3901 ggaaggatgc gtattaaaga aattaagtag atgggttggc attgcacact aattagtaat 3961 gcaaatatac cttagtttat tgtgatctct gtaattataa ttgcatattt atattccttt 4021 ttatgtctaa ctatcgaagc gtacctgtgc tattacagat aaacttatta cgtcatatgt 4081 tcatgttgaa ttgattggcg tgcgattagt cctttctgtt tgcatctgct tgttttattc 4141 acttgtgacc aacaaattta taaccaacat catgtatgcc atccatacca attgttgtgc 4201 gagaaattct acgtttttcc tttgttaccg attctactaa ttgttgctga tgaatgcgaa 4261 ttccgtgaaa tgccatcgca caagtgtttt tattcctttg tttccatttc tacggagcag 4321 ggcaatcagt acagttctga aattcttgct gagtgttctt tcttttgaaa gtttttacac 4381 ctgtgggaca attatggaag cctgtaacct cgtttatttc ttcgcttcta tgcagggaaa 4441 aatatcaaat tttagttaga cagtgccaga gcatgcaccc aagcattggt acaggtgagc 4501 ttgcttacgc tgttggatca aagctaatgg atgtcaggac tatgtcaaaa gaaacccaca 4561 ttgcagaaga agttagcaca agtcaacaaa cttcacaaaa tacagctggc agtttagtag 4621 aagattcaga ttatggcccc ggtggtgcac agcagtcaca aaaaagggaa agctgtagta 4681 aatcagctga actagttggt ttcaacgtac ataatgatac ctctctttat gattcttcca 4741 attttattgt gtcttctaca gaagtgaata attgctcaaa agattctcag gattacaatg 4801 acatgggtga accaagatat gacactgaga ccttcgatga ttatccttct ctacctgtta 4861 caaatttttt ctcaactgat ggtgtgggca gcaatggagt tgataaaaat cattgtagtt 4921 tctcagttcc tgaagataga ttaaggcacc gtgatgaacg tatgcacagc ttccaaatca 4981 ataataacat agatctcatt atagagtcaa attcatgctc cagtgatgtg tttagggcta 5041 gcaacagtga ttcagccatc tttcactcag atgcatacaa gcaggataga tggttagatg 5101 ataatggcta taacagggaa gttatagatt ccttgaggat atctgatgca ccagaagcag 5161 attttgttga tggaaccaaa tccaacagtg tggttgccag caaagatcga gtctctgaat 5221 ggctttggac actgcaccga attggtatgc tctatttttt cttcacttca tcatgcaatt 5281 acagtggtat cttgtgatta tgttctaatt tgcaaaacct attacagtgg ttgatgtggt 5341 tagaacggat agtcatcttg atttctatgg agaatcaaga aatatggcta ggatgtcaga 5401 tatacttgca gtttatgcat gggttgatcc ttccaccggg tattgccaag gtatatgcat 5461 atttcagtgg catctttttt tacttccttt ttggtttctt gatgtgtcta aatgggataa 5521 gttgctaaca ggtatgagtg atctactttc accttttgtt gttctctatg aggatgatgc 5581 agatgccttt tggtgctttg agatgctact gagaaggatg gtaattcaca tatatttcaa 5641 attttgttgc ctattagttt ggtttctatg ttactccatg cataatatgt gccctgttcc 5701 acttcagcgt gaaaatttcc agatggaggg accaacagga gttatgaagc agttgcaagc 5761 attgtggaag atcatggaaa taactgatgt agaattattt gaacatttgt caacaattgg 5821 tgctgaaagc cttcattttg ctttccggat gctgctagtg ctttttcgtc gagagctgtc 5881 ctttgaggag tcacttagca tgtgggaggt gtggcatttg aagacacatg tattatcttt 5941 tttcagttgt tgttcttcgt aggaaagctc taatggatgt ttgtttgtca gctggtgtag 6001 gtctagggga tgttggttaa gcctttttta tttcaaaaat tgtattacta gttaaatatt 6061 tcaaatagta aaatagggta catcttcgat ttaggttcaa aatcatcaga ggtgtaggta 6121 gatggttcat tacgattgta gttaatgttt gtgatatcat gtggcatgtg aactttatac 6181 tccctcgggt cacaaatatt tgacgtttag gacaagatgt ggtcaaactt ttaaaatttt 6241 gaccgtcaat aacagctcaa atgcgtagct tataaaaaca caaaaaaaga tatgcggaga 6301 tttgccttgc aaggtattag tgtcataata tgatacactt attagatttt atagtcttat 6361 tctgatataa aattgatggt cagtttcaaa agttttgacc aaatcttgtt ctaaacatca 6421 aatatttatg atcggaggga acattactta taaaatgctc ttcacactgc agtcttgatc 6481 tgttaaccaa ccgtgcttct tgctttcaga tgatgtgggc tgctgacttt aatgaagatg 6541 tgattttaca tttggaagag aattgtctgg agccattgct ggtagatatg aggaatgatt 6601 tatcatgtga ggtgaaagaa gagcaccggg tgaacagtta cacaagaaga aagtccaaaa 6661 gcaggaagcc ccatcataga aatggtgaaa tgcgtgtagc ttgcaacctt ggaatgaaac 6721 ccaatacaag aaatcccctc tgtggcttgt caggagctac tatttgggca agacatcagc 6781 agatgccaca tataagcaca aatgtgttag caaagaatgg agatgatgat ctgcctatat 6841 tctgcgtagc agcaatcctt gtaatcaatc gccacaagat aattagagaa actcgctcaa 6901 tagatgatgc aatcaaggca agtttaagtc acaacttcct ttcatattgt ttacaaacct 6961 cggatccatg aaattactac caagagttac ctatatttgc attagatttt gtggaattca 7021 ttttaggcaa aattaaaaat ttgctcagac agtacaataa catgttatgg ccgatcattt 7081 ctgcataaat gactattgat tttgtcctct gctgaattga tgggtttaat tagaggatgc 7141 ttatttcatt ctgataacta tcaatattta caagttacgg caactgctaa ttaaaaatga 7201 tgcccagcct ttctccctct tggaaaaaaa gatgggtaaa cctgtatata gtggtgatat 7261 tgactctgct gagcagtctt ccacttaaat gggaagagtt aaggaaagta tagtcaggtt 7321 tacttataat gcaacttatt ggcatattaa tgcatgttta ttgtttgcac tcctgaagtt 7381 gagttggtca attttttcca tagatgttca atgataatat gctgaagatc aatgtaaaaa 7441 gatgcgtacg catggctatc aagctgagga agaagtatat ttacaaggta aattgtgata 7501 agcatacatg agcaccatcc atgtttttca ggtatattta caaggtaagt tctaatttgg 7561 tcttgggata cagttattga aggggggctc ggaatgatga aaaagtggaa actgaagttg 7621 agaaatcgcc ctggggaact agatgttttt caaccatgaa cttctcgtaa ttatgggtga 7681 tggaacttta tatattcatt agaagtccaa aaaaaatccg tatactcacg gtatggattc 7741 cctctttctg tttatgtttt gttagagatg gatgacgtac ataatctgct tgtcttgttt 7801 cagggaatct gtacatatgc acagtatact tgaaaacaag agacgaagcg gtggaaggat 7861 aatagagaag accgccatgt tggtgtagca tcgatcgatg ttgtcattgt ttttgtggtg 7921 ccagcccatc tgccttggca ctttccgtgg tgatttctga taaaagtgga gtactagttg 7981 ttttttcttt ttgccaaaca atttgcgtca gctattggtg gagagagaag gaatgaatga 8041 ggaatgtgta taaagcacta gtggtaatca cgcagtcgtt tcaatacaga acagtaaaaa 8101 atggaggaat tctgccactt tgttcttttt tttcctggca cctgttcttt ttgctagagg 8161 gaaaaacagc cctggctggg cactgggcag catactttgc ggcccaatac gatagagccc 8221 aaccagggta ggttttcaac taggccggcg agtcatcttc cttataatgg attcctcaac 8281 cacaatatca aatgctctag atttcctaat tattaaaagg aaaaagtcaa actttaactt 8341 tcttaaaagt aggccgaatc taattcgtaa cccttaacca gaaaaccgga taggacggat 8401 tcttaaaagt ttggcgttta tgtggcatta gaattaaaaa tatatgtgga gctcacatga 8461 tcatctctct aatccttctt cctcctctct ctctcttatc tctctctttt cttttcccct 8521 tcggccctgg aggcggtggg taggacgttg acaggtgctg gagcggcggc ggcggcgagc 8581 gggtgagggc cagagcggca gcggagggtg tgtcggccga ttccccttcc ctttcttggc 8641 tcgccgaaat ccctaatccc catgccgcat ttcacctctt cccgcgcaca acctccgcat 8701 cgcacgcggc cggcctctgc acgttcggcg aaggcggata ca // LOCUS BABO01000004 478 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 4, cultivar: Koshihikari. ACCESSION BABO01000004 BABO01000000 VERSION BABO01000004.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 478) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..478 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 4" /organism="Oryza sativa Japonica Group" BASE COUNT 68 a 176 c 151 g 83 t ORIGIN 1 gtttagcatg caccccatct tggtgagctt tcccatcgcc gccgcgtcca tggggccaga 61 ccaaccggtc acctcctcca cctcctcccg caccgccgcc cgccactccg ggtgcgtcgc 121 cagcatcagt agcgtccacg acagcgccag cgccgtcgta agcttcctct ctgcggcggc 181 gctcgcctcg ttcccggcca gcagcagcca caacaggtcc gtcgtcgtcg tcttcctgcc 241 gccgccttca caccgccgcc gcgactcgat gatgtcgagc aggagcgcgt cgatcttgcg 301 gcccagcttc cacgcctcgt aggtggcgcg gtccgcgcgg atatggagga ggctggcgag 361 cgggacgctg acgagacgca cgcgtggagc ggaacagcat cgcctgcagc tttgtggaag 421 accgtggcgt cgtcggcggc gatgctgaag ctggccttgg cgatgatctc ggcggcgt // LOCUS BABO01000005 163 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 5, cultivar: Koshihikari. ACCESSION BABO01000005 BABO01000000 VERSION BABO01000005.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 163) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..163 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 5" /organism="Oryza sativa Japonica Group" BASE COUNT 37 a 50 c 33 g 43 t ORIGIN 1 gatgtcgatg cagctgtgtc ccaacgccac tatgtcgctc cactcgccga gcatcttcga 61 cgtcgtctcc tccatcacgc cgatcatgtc ctgcatcatc aacaacaggt acatatgtag 121 ccatcaatta gcatcatgta gaatagtgca cgtgttcttg tgc // LOCUS BABO01000006 6678 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 6, cultivar: Koshihikari. ACCESSION BABO01000006 BABO01000000 VERSION BABO01000006.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 6678) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..6678 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 6" /organism="Oryza sativa Japonica Group" BASE COUNT 1588 a 1700 c 1476 g 1914 t ORIGIN 1 gttggtggcg gagaaggcag gggcgacgat gcagcggtgg cgagcccact cgtcgccctc 61 ggccatgacg cggcctctcc cgaacatggg catgcggttg agcagttacg atatagtgtg 121 ccaattggca cacctacatt ttagtcatgt atgttgttta gtttaatttt taatttttcg 181 atagccaaat attaactatt tagcgacttt attgtctggt gtccgaagaa gaatatatgt 241 aaatgacatt accataataa atgttgaatg cttcatcaaa ttttaacctt gcaacttgga 301 cgaatcgact ggcagttcca actatagaat tattgacttg aggtgaactt attcctccct 361 atattccgct ctttttctcc tttccttctt ggagtatctt tatctttttc cttgtactat 421 ggaggagtac tattttcttt ctttttttct cactcaactg ctcctttttt tctttagaag 481 aaaaaagaaa agaaaaggaa aaggaaaagt tctgggactc actcctactt gtgggtggtc 541 gtgctgtact ccagtccccg cttcactcca ctcgccgtca ccccccacct tgacctccgc 601 ttcgaattcg aattcgaatc cgatggattc gattcgccgt cgatctgccg gaggcatcct 661 cggcatcctc tttctggtgc tgctccggtg ggcgggggcg ggggatccct atgcctacta 721 cgagtgggag gtatcgtacg tgtggggtgc gccgctgggc ggagtgaaga agcaggaggc 781 gattggcatc aacgggcagc tgccggggcc ggcgctgaac gtgacgacca actggaacct 841 ggtggtgaac gtgaggaacg gcctggacga gccgctgctg ctgacgtggc acggggtgca 901 gcagcgcaag agcccctggc aggacggcgt gggcggcaca aactgcggca tcccgccggg 961 gtggaactgg acgtaccagt tccaggtgaa ggaccaggtc ggcagcttct tctacgcccc 1021 ctccaccgcc ctccaccgcg ccgccggcgg ctacggcgcc atcaccatca acaaccgcga 1081 cgtcatcccc ttgcccttcc ccctccccga cggcggcgac atcaccctct tcctcgccga 1141 ctggtacgcc agggaccaca gggccctgcg ccgcgccctc gacgccggcg accccctcgg 1201 cccccccgac ggggtgctca tcaacgccct cggcccctac cgctacaacg acaccctcgt 1261 cccgccgggc gtcacctacg agcgcatcaa tgtcgacccg gggaggacct accgcctgcg 1321 cgtccacaac gtcggcgtcg ccaccagcct caatttcaga atccagggcc acaacctgct 1381 gctcgtcgag gccgagggct cctacacttc acagcagaac tacaccaaca tggacatcca 1441 tgtcggccag tcctactcct tccttctcac catggaccag aacgcctcca ccgactacta 1501 cgtcgtcgcc agcgcccgtt tcgtccccga cgccgacaag ctcaccggcg tcgccatcct 1561 ccactactcc aactcccagg gcccgccctc tggctctctc cctgatgccc cagatgacca 1621 gtacgacacc gctttctcca tcaaccaagc aagatcaatc aggtcagtag cctgcattgc 1681 cattactgct catccattca ttcatcggtc ctactcactc tcattgactc tctctctctc 1741 tcacacacac ccagatggaa tgttacagcc agtggtgccc gccccaatcc gcagggctca 1801 ttccattacg gcgacattac cgtcaccgat gtgtacctgc tgcagagcat gccaccggag 1861 ctcatagacg gccagatgcg tgctactctc aatggaattt cttatattgc tccatcgact 1921 cctttgatgc tcgctcagct ctttaatgtc ccgggagtct acaaactgga ttttcctaat 1981 cgtcctatga acaggttacc aaagcttgac acctccatta tcaatggcac ctacaaaggc 2041 tttatggaga tcatattcca aaacaacgcc acatccgtgc agagctacca cttggatgga 2101 tatgcattct ttgttgttgg gtaaaagctt gcagcactcc ccctttcccc tgccctggat 2161 gtactactta tttacttata tatggatatg gtggttactt ctctcaggat ggactatgga 2221 ctgtggacag acaacagccg cggtacatac aacaaatggg atggcgttgc acgctccaca 2281 attcaggtgc tcaaaatttt catgtctccc attgctttct atggatgccg gtttttaact 2341 atgacacctg gtagctagtc tgctgcctga aacccaaaga aactagtact gtgctattac 2401 atctgttact tgatggagat ggaagttagc agccgatatg tgggactcgt actatgtagt 2461 aacagagcgg cacggtgcac cttcttgtag aaaaatcatg tatgtctttc tatgggggtg 2521 gttagttttt tgaggggatg ttgtcatata tccatatcat tcagatatgg agtggctaat 2581 tatgtggtca accaatgatt cctttgggca tggcagtttt gatggtatag aaaccctcat 2641 tgtttgtttg gttagtgata aacttcatgc actggttcaa agtttcagac gactgcattt 2701 tatcttgaga aaaccttcga attcaggaaa tactgtctga aatataacct actcatgaac 2761 tctatacaat attctggtac agcctttagc ttgacatgtc tttgtgcaag actgcaggta 2821 ttccctggcg cttggacggc tgtccttgtc tttcttgaca atgcgggtat atggaatctg 2881 cgggtggaga acctggacgc ctggtacctg gggcaagaag tgtacatcag tgtggttaac 2941 ccggaggata gcagcaacaa gaccgtgctt cctcttcccg acaacgcgat tttctgtggt 3001 gcgctgtcaa gtttacaaaa gtgaggcttc tcatgacagc ggttttcagt ttgcagctca 3061 gggatgccta cctgttatat aacatgtata gcgtttgttg ttgattccgt gcagggagca 3121 atcgcataga ttccaatact cagaagcttc tcagataacg cagctgtgga agatggtttt 3181 cttcatggca tggttggccc tttggtagag cttaattaga tctgtctgct ggggtgatcc 3241 ggagacgaga gagctcagag ctggtcccaa acatggatga gctctcagct caagttagta 3301 gggtggtgaa ttttgtcaga ttcgaattgg ttagattgga cttgagtgat gatcctgtct 3361 gggaagggca aagagtagga ggaagcattg ggaaggcata cacacgcttg acttgatttg 3421 gcttgaagtc gagctagcag gttgctcatt agccgttgtg tgatatctga agatcaactt 3481 actacccaaa cctagactca cagaaaccaa ttgattgata tggattaaga cctgaagctt 3541 cttgggtttt cctaagtaat ccatttgttg gtggttacgg tatccttttt cttgtattga 3601 cagcaagcag aaagttgttt taaaagaaca gcaggcagaa agaaaataat tatggtagtt 3661 gggcctaact gaattagtat tctaagaata tgtcagttta caatcttaat tcttaagaaa 3721 gtctaaaagt cgtgcatgtg cgttccgagc acacactttt tcgtatgaaa gtttcagata 3781 aaagtttacg gatgaaagtt ttttttttga aaaaaaaaag atgcgcgctg gaaatgcatt 3841 tccgatttca tgcaaggttt tataaggtac ttttttttta aaacctttta tatataaata 3901 taaggtatta ggcttgatct cacaagtgta gggaaatgga atctgacttt agatgacaag 3961 tggtggcttt gtttgctcct tgcctccttg gccaggggag aaggcagttg acctacctag 4021 gtaaaaatta cacaaggaaa aaaagagaga gtttctcttt ctttttcttt tctctctttg 4081 tttttgagct ggaggattct tctctcttct taagctcatc agggccagct aagccagcac 4141 aagcaaaagg actctgtatt ttctgtgttg tctcctctag tcctctcctc ccttctgttc 4201 cagtcaggac atacaaagca aagatccctc cctctgctgt gcaggctgca gcaggcgagg 4261 agaggcaacc agagggaggg taggttggtt tggaaggaag gaaggagaag agataaacaa 4321 gttaggagga gacaagcatc cgattccgaa ctttgatgga tcccctccat atctatcttc 4381 ccatccaatc caatctctgc cctcaattga gattcgagag ctaagctaag ccacgccaaa 4441 ttaagccatg gcgtgcacgg cggcgcgcat gttcgcctcc aacgccaccc tctgcgcctg 4501 cgagccgggc ttctacctct ccgccgccat caacggcacc tgcctcggcc tgcccgacgg 4561 cggctggcag gtcggctccg tcggcgcctc ccgcaaccag agcttctact tcctcacccc 4621 cgtcctctcc ctcgacgtcg tccgccgcct cacccagtcc caggccctcc tcctcgaggc 4681 caccatcgct gccctcctct cctggcttgc cttttgtgcc ttcgccaggt tcaccggaca 4741 cgaccccacc ggcaacaaga ggctcttccg cgcgcgcttc tgggtcagcc gcctcgactg 4801 catctacgac accacccact gggcggttag ttttcttttt ttcccctttt ttttactaat 4861 aacatcttgt ttcttacaaa tttcttttgc cctcgccgaa cttagatttt catcaaggcc 4921 aaattaattg cttttgagtc cttctactca tgtcgaaatt gaggattgct ttgcttcgct 4981 tgttaggaat ctcctctcct aaggaacaag tttttgcttt gctactactt taatttctta 5041 tccatcacac tccttttgcc gctccttcct acttcggcac attgcacttt cttaccagta 5101 ttagatattg gctatggata ttatacatta tacactacga acactcctta tatccaagga 5161 aatttatttt ctgcactaat ttctactttt ccaagttgca ttgaatattg atgtaccttg 5221 ccgtactgta ggatgaccag caagtactga ggaaaagaaa aacagagttg ggtggtacgt 5281 gctcagtagc tagcttgata ctcttcgttg gattagtcac tgtgtaagtg cttaacaaag 5341 tctagtgttg gaaggaattt gttactcact cactaacagg gtgtcttctt tccttgcttg 5401 ttgcaggctg ctgtaccaag ccatccaaag acgcaacatt gaagtgcatc gggtcaaacc 5461 agccaatgct cctgatttgt tgtcttttgt caatgatatc gagttccaca taaccaccat 5521 ctctagcatg tcttgctctc agttggttgc cccttctaca attgcaatgg gaacacctgg 5581 atctatggac ttcaggctgc tgcctttgtc aacattgttg acatacaatt gccagaacac 5641 gagccagggg ccatctgttt cactcaagtg caatggctgc agaatcccgc caagagacca 5701 ctacgtatcc tggcaattta ttgacctgcc aaggcaacca gctgccgctg ttggcttcca 5761 gtttaatctc actgcgaagc aacatggaga tgacaaacat gtgagctctg tcagtggaac 5821 tataaactcc gacaatttta ctgatgacaa gctgaagaca ttcagaggga gagattccaa 5881 tgtgctcaag attcaattgt ttcctcaaac atacatcaat catcacaatt tgaagcttct 5941 gcaacctctg gttcaggact tcactcaagg ttctaccttt tcaaatgtta gaaacttgaa 6001 tgcttccttg caaaacccta tggatggaat aataaatact acactctaca taagctatct 6061 ttccaactac attgtggaga ttagcaacga aaatgtgcta ggcccaggtg agcttttcta 6121 gtgattgttg atacctacat aagtcatctt tccagcctat tgaaaatgaa gtctctttac 6181 ttgtgaattg tggtgttaat gttactaaga tttacgctac taagtaccaa tacaaatatt 6241 tgaaatcccg gtgcaaatat tttctccatg atggcttttt taaatttttg ggcttctact 6301 aatctgaata gtttgtatta ctagtatcta atatgcttat tttctgcagt cagtatactt 6361 gcaagtattg gtggccttta tgccttcagt gtggcaatat ttctttgcct tatggctcaa 6421 gtaagtcatc acaaatctat ccctgttgtt tgtttaagat aaactgccag tttttttttt 6481 cactttcgag ttttaactag cctaacactt gttgacctct gaatctttgc atctttatgg 6541 ggttttctgt tccactcaga attactaata ggccatgaaa attttctgat attttttaaa 6601 tgaattgaat taacatactt gcaatttccg ctcattatca tggttcaagg cgtgtgctct 6661 ggtgcacatc cttcctcg // LOCUS BABO01000007 4446 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 7, cultivar: Koshihikari. ACCESSION BABO01000007 BABO01000000 VERSION BABO01000007.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 4446) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..4446 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 7" /organism="Oryza sativa Japonica Group" BASE COUNT 1382 a 794 c 953 g 1315 t ORIGIN 1 cctccttcgg tcattccggc aaaaaagaag atgacttagt atgcagctgt aattgatgct 61 ttgtctttcc agtgtgaagc taggataaaa aagcttcgag acgaggattc cagaatgcta 121 aaaatactga ggaaaagacg tgctcaacag aattgggata aggtgaagaa tgtcctgatc 181 taatgatgaa cattgtacct actagactgc atccctgatc aagcatatca tttttcttcc 241 taataggtga ggaagtttgt catgtatacc tggggcccta gcaacttgga tccaagtgat 301 agaagtggca aatggcctga aagttcagtg atggattctc tccatggatc cttccacaag 361 aaaagaaaac cgattagacg agcaacctcg aatggtaaca aacctaagag aaatcctgct 421 gacgcggtaa agtaactgtc cttttcaact actctttatg gcactattta tacatttgcc 481 attcaataca gtaaaatacg tttataccag aaaaagggta ccctgtgtac atttttcgat 541 actctttttt tttacttcat tctttctctg acaaggtttt acttcattcc ttgttgaatg 601 attatcttat ttttcctgtt tcaatgatat cacagggagt tattgacatc gaaagagttg 661 gggaaatgca ggagtcgagt agttctagac aggcttaatg gatgaaagct gtggatgcta 721 ttggtcattg aaatgtgatt gctcttagtc tctgactcat ggctgattct acacaartgt 781 gcttgtaatt tttatccctt tcaatagttc cgcataaaga atttttttgt tgcagcagca 841 tcattggagc ggcataccgt ggcttggcta tatggcaggt ccaacacaac cgtactacca 901 gagaggtttt cttgtatgta tgttgcaaca aatggggaga aatgtacgga gttttaacta 961 ttaatcagca tgttggctgc tgccgaggtc aggccagaat cctctttgat tttcatggga 1021 cttcgtttct tgagttgtcg aacactgtat ataccttcac cagttaccac cctccacgtg 1081 caattacagt ggggaagaaa cagaaagatg cctatcattt ctctatatga agcagatggt 1141 ggcatttgta ttttaattta ttacatcgtg tcatcgtgta aatcttcgtg ttggtgtgat 1201 tcgccgaccg ttttctagcc ggctgattat atatgccaaa cttatactcc gtaagtaggg 1261 aaaggtgacc ttcagtttca ggttgagaga ttctacgtgg tactgtgata gctcttgctt 1321 ttgatggaca tgtaatgtgt tgttgttgac tatgtggtac tttgtgatgc ttggacatgt 1381 ttatatgtgg tgctatgtta aaaaatcctg ttgaaattgt gtcaattatt gctgaaattg 1441 tgtcaaaatt ctatcttata tgtaaaattt tggcaaaaat caggtcagat ttgaaatact 1501 atatatgtca aaattattgc tggaattgat tttttttatg gcgattgagt tgtgtgtgtg 1561 taagaaatca attatactag ccaacaattg agaaaaaaga gagttgcata ggtggaagaa 1621 gttctggctg cctaggaata tgggggcaac tatctactgg cttgacactc aatgacatag 1681 agtaattttt ctctaccctt aaacccttgg aacaaaggtt tttttttata agaatacaac 1741 atttgggaag aatttccgtg taccgcacaa gggtccatct gaatgttggt attgaattcg 1801 ccctattgaa ggaattcctt tagtcatgat tcaacttcca ttgggattgt aatcgatcta 1861 aaaattccta tttttccata accctgacat tttttggggg gctttttatc ccggttgaag 1921 aaaatggagt tgacaatggg graaaaaaaa acctatgtat ttgttgaaga agtcttgcgt 1981 ccccaaaagg tttgccattt tgcggtagtt gataaagcct acgaatcatt gcaaaattag 2041 aataaataaa tgcaaagttg tattccattt actctcaata atgatattga gattttaata 2101 attgaaaaat cgaaatcaac aattagttaa tcataaccga tatggactta cacttaataa 2161 atgtagtgtt gtacatggtg tggaatttaa actatatttt tatgtgacaa aataatttct 2221 aaattcagac caatagatac aagttgtact ggatttgaaa tctcattatc acttttttcc 2281 aaatttaata gtactaagtt ttggaaccaa ctagtaggaa gttacatgtc tcaacttagt 2341 atctaactac catagggttt taaataacat tcattgatac aaatcaaaat cctaaaccat 2401 atattacaat tgaagataaa tgattaagga aatataatca tagaaacaat aatatcaaac 2461 tacaactaac tttggccgat acgatgattt aatatcatga aaattatata attaaatcat 2521 ttttttcatt tagctataaa taattcaata cagaggaaaa ttataagttt catcaatttt 2581 aatggatcaa gtagtactaa aacttatagt gtaaatgaaa aaaaaactga aattagctag 2641 aatttttttt aaaaaaaaac ttattttagc ctatagatga aattttgatc cattaattct 2701 gaatgggtat ccgtttccat tcatattcct atggtttcaa tattacgtga gtggtccata 2761 agcatgatta ggctagacca gaaatgaata gtactgaata agcattgctc atcatcttcc 2821 ctagtcgaag gcgagaaaaa aaaaagagaa gagaagatgg gcgtcagtgc tccgatgact 2881 aaacggcggt gaggagagtg gtaggacgtg tcgcacaaca tgaatcatcc atagatggtg 2941 gaggtttcat ccatagatgg tggaggttga taatgaagaa aaccataatt gtaggaacac 3001 ggccggcaac gacgtggtcc caatagagag aaataataac aacgaactct gttggtgaac 3061 acgatcggat gagtgcatga aaatgtgttc ctggataaaa gggtttcagt ttcttgaacg 3121 cgtaggagga atgaaagacg gagaaaaaat gactaacact gttcatcgtc ttcgctagcc 3181 gaaacgagaa atataattgg aggaaagatc ggcgtcggtg cttcggcgac caaacgacga 3241 cgagggaggt ggcaggacgc gtcccacgag gtggcttgtc catagaaggt ggcagttggc 3301 aatgaaaaaa caaaaaacag tggaaacgca gtcagcaatg acatggtccc gatggagata 3361 gaaacaacaa caattagctc tggtggtgaa cacgaccagg tgagtgtgtc aaaatgcgtt 3421 tccggacaag gggttatggt ttccttaaac gcgctggaga aacgaaagac ggaaaaaaga 3481 gaatgcatca tataggaggg aaagagggac ggggaggaga gggttgccat gaaaactttc 3541 tactccctcc atcaatgtga caatgaatct agcagctaga ttcatttagg atttatgtgt 3601 caaatccaac caaaatctct tatattttag gacggaggga gtatatagaa gttactttaa 3661 aatatcaaat atatctcttt gtcaagtttg taataactaa aacttaatta atcatatgtt 3721 attggttttc tcgttttacg tgcacaaact taatcttcac catcatcaat tttaaagttt 3781 aaacaccatg tttagggttt agggataaga ttcaaaatca atatccagca agctatatat 3841 agcagagttg gactcttatt ttaatctgag gcatgataat atttttatac agcgtaaatg 3901 gatggccata ttcatttatc cgattgatat ctaattttat ccctcacaag tcacagggag 3961 gagtcgaaaa gagtcaatac cagccgcgcc accgctccct cgctgacctg cccgtgttcg 4021 cccctctcgc cggccgccga cccgcccctg ctgctcaccg ctccagcctc cgctcatccc 4081 aagccttcca ccacaacccc ccacccctgc tcgcccgcgc acccagctca ccagcgcacc 4141 cgtctggggt ctgcctgccg cttctccctc ccgtgcaggt gcaggggaag aggcaaggag 4201 ggcaagaccg gggcgcagtg gggagtacgg aggaagctgg tgcagcgtgg gagagaggga 4261 gctggaaaag aaggaagaaa ggggggcagt acaaggggga cttgggagga ggaagaaggg 4321 ggaatatttt gagtatatga tcaatttcgc cgtccaatcc agatgtgcgc caaccaattc 4381 gctatggtat aattgataat aatgatacct tccttgttgt atctatctat ctatctatct 4441 atctat // LOCUS BABO01000008 4547 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 8, cultivar: Koshihikari. ACCESSION BABO01000008 BABO01000000 VERSION BABO01000008.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 4547) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..4547 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 8" /organism="Oryza sativa Japonica Group" BASE COUNT 1259 a 1013 c 971 g 1304 t ORIGIN 1 ctatctatct atctatctat cgatttctta tctttctttg ctcatgcctg acgatgtcat 61 gtcacagctg ctatgctata gcaatctcct tacttcagga ttatcatgta tgtaaatcac 121 tagtaaatgt attacgagaa tatatacaat taagcatgta tcacatcgat gtaattggct 181 tagtacaata aagctttcat tatctaaaaa aattacagtt cttgtgttgc tctgtgcgaa 241 cgaaacttta aactggaaca ggttgaggag ctggcttcac tcatcaagga caacctctac 301 agcaagcacc tcgtcctctc tactgaggaa accctcgtcg ggatcctaca gaaccagtac 361 cacaactctg acgatgacga ggatgaggac gatatagtgg cagcataccg cgggacaaat 421 aggaatatcc tagagctcca acctgccagc tcctatcaac gtcttctttt gcatcgcctt 481 gccgacatct acgggtgctc tttccaattc cattcgacct gcttcaccta ccctcttctc 541 aaatactaac ttaactggat agagtaatat ttgcaactac taatgtcttg cttttgtgtc 601 gctgctaggt ttgttcatga atctgttggt gaaggtgaag atcgacactt agttctccag 661 cgctgccctg aaactgccat gtatgatacc aaaagtgacc acacatctct ttgttattga 721 gtgtcgtctt atgtctccct atgccctcat ttcgctgttt cttatactac aaacatgtac 781 agtttaattt ccacctgcat cattcttcaa tgcaatagaa aaaagggtta atagaaaaac 841 acattgtttc cacacaaaaa actgtcttca gggaaataaa acaaaagcta tcccgtaaac 901 tcatgatcac atcttgtttg ttattccttg ccgtcttgct ccaattgcat ccctagttcc 961 acctgtggcg aaccatttgg ctgctcacac tttaagataa tcacgccatt tgcctcccat 1021 agctattgtg ttgactcaga gcacggaagc tgaaatcaca cttttcttgt gacctacaca 1081 tgagacatta ttctgtagtt ctattacctc tgattactta ttatttcata ttgcgcagcc 1141 cacctgtcct cgtaagcgac gtattatggg agtatgacaa caaagataca tcgacatctg 1201 ttgtagtgaa gaggaaagat acaggtgaat tgttataatt tcattttgtg gatcattcat 1261 gatgaagcat tttgatgggg tgacactacc ctgtagcacc catgctgcca attctgtttg 1321 tgctttagta aatggtccat ggagaagatt cgtgtgtact tatgatccgt tgttcggctt 1381 gtccgggctc aagaaaattt ctggatcctc ctctgttttg ttcccctaca taaccactgt 1441 attacctgac caatatattt ttttttctga aaacaatcat aatgcccttt actcataacc 1501 ctaagatacc ttccctaatt aatgaaatgg gtccatagcg gatcaagaaa aactaaaaaa 1561 aagtatggga ggataaaatg aagaatcagg gcacactaga aattctcttc gcaaaaaaat 1621 tatgaaatga ttcctcttga tggtagtgac caaatctgga aataggaact aggaagtcat 1681 tgtgcagtgc cttagcctga atttatttca ccctctcata aaaagggatt aaaaatgcac 1741 agtatggtcg ttgagcatga ttcgcgtgac aaaggagtaa agctggctgc tggatgccag 1801 ctggagaaat actggtattt ttttccatgt gagtttgaag tgggtagtca atttgactta 1861 cattttcatc gttccacagg catagtttga tgtgtcataa gacattcagt tccatagata 1921 tcttcttgtt attcccttaa aaaagatatt tcttattatt ctctcaagaa attctaagtg 1981 caccatctgc acaaagaaaa acctattcta catgtataaa tgtgatgcac tgtgcaatct 2041 tatgtgtgtg taacaggtta ataattagca ttttgaattc tcttctaaca gatcttgaag 2101 aagcctggaa ggaagatgcc caagaaaata tttctgctga aatctcgcat ttgaaaaatg 2161 atgcaggtac gttgcgcttg ctgtccacct ctcaacaaag cgtctttcaa actgtcttag 2221 ggtgtgtttg gaactccaag ttcccaactc cattgctttg ttttcgtacg cttttcaaac 2281 tgttaaacgt tgcgtttttt tgcaaaaagt ttctatacaa agttgctttt aaaaatcata 2341 ttgatccaat tttgaaaaaa atagcaaata cttaattaat catgtactaa tggaccgctc 2401 cgttttccgt gccaactgtt tgggatggga accggcatat gcgaacgcag ccttaagctt 2461 ggttctctgc ataatttcag tcgaggaatt taagtctgaa aaaaaaccca atcaactctt 2521 ttatttcaga tttgaaggct ttgcaaaagt cagttgcacc cccagcaccg tcactcaagg 2581 agagggaagc tgcttatcga gctgctcgcg agcgtatctt ctcagcgcat gatgccaagg 2641 gaaatgggac agcagtggca aaacctaggc atgttcctgc tgttgctcaa cggatgatcg 2701 cgcatgcact tggcaaaaaa gttgagagcc cgacagagac agcagccgtg aagaatggca 2761 aaggaaagga gccagcggaa agtagtagga acaagttaaa cccacgcaca gcaggtggca 2821 aggaagatag caggtatgtt gagaatggca gaatgaggtt gcacaccggg aatccatgta 2881 agcagagctg gcgtacaagt aacagtagag ctgctagtag tgttagtcct gatgaactga 2941 agagggagca ggttggagcg gcaaagagga tgtttgtgca tgccctgcgg ctgcctggtg 3001 ttgaaggaag tgatggtccg gtgcggaaag gcaagtaaga gtcgagttga gatgggaggt 3061 gtaatgtagg tattaggatg gagtgaaatg gcaactctgt gatgattttc atctggtgat 3121 actatgctgg tataagatga gatggaaggc ctggtatccc ttggtggaag aagttgaagc 3181 gcaaaatgca atgctgggga tatgcaagtg gaagaagttg aagcgcaaaa tgcaatgctg 3241 ggggatatgc aagtggaagt ggtgagagct agctgcttgc cgatggcagc agttgtggca 3301 atattgagtg caattgacag gtctttgttt gttttgtttt tttttttgcc agaagctgca 3361 gtttagcagg tccttatttt cgtcagaagt tacaaagaga gaatatgcca atttttagct 3421 ttatattttg ctgaaggcag acaagttgta gaggaatatg ctgatcctta gaaagaactt 3481 tgtgtagcct atttggatgg tttcagactt tcagtgatag agtcggagca atgttggtct 3541 cattttcgtt tgctgctggt tacttgtatt aatacattat agaaaatgag tacataaata 3601 tacatgacga tatgatcctg taagatattc tattccatta tccaaaaaaa atgaaatccc 3661 tgccgtccga tgcgatgggc gatggtaaaa ccctagctcg aagccaagca cagcctgggc 3721 cgggcccggc ccagcccaac aagtagtccg ctgttataaa gggaaggtag gcatctcccc 3781 ccgcgcgccg cgactcgtta ggctactcca cccactcttg tttagggttt ccctcagccg 3841 ccgccgccgc atccacgctc agcagccatg gcggtggtcg agcagccgca gcagcaggtg 3901 gtgaagctct tcaactgctg gtccttcgaa gacgttcagg tttgcctgtc ctcccattat 3961 actagtaagc aagtaggggt actcgtctgg tctgtcgata actctcgttg gcgcaggtga 4021 acgacatatc cctcgccgac tacctcgcgg tgtcctcgac gaagcacgcc acctacctgc 4081 cgcacacggc tggccgctac tcggcgaagc gcttccgcaa ggcgcagtgc cccctcgtgg 4141 agcgcctcac caactccctc atgatgcacg gccgcaacaa cggcaagaag atcatggctg 4201 tccgcatcgt caagcacgcc atggagatca tccacctcct caccgacgcc aaccccatcc 4261 aggtcatcgt agatgccatc atcaacaggt accaccgtcc aattcccaat tcctttcagt 4321 tgcgcacttc aattgtccaa ttcacttttt tttcaatcac cctcaccctc ttatatgcaa 4381 atgcttatca ctgtccaatc acccccaccc tcactcttat atgcaaatgc tcataactgt 4441 agtatttttt ttctttttac aaatacttct atcccaaaat acactcctct attttgcccg 4501 tgcaattaat gttatcttac tagccaaaaa tcaagacggg aatatat // LOCUS BABO01000009 198 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 9, cultivar: Koshihikari. ACCESSION BABO01000009 BABO01000000 VERSION BABO01000009.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 198) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..198 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 9" /organism="Oryza sativa Japonica Group" BASE COUNT 58 a 35 c 47 g 58 t ORIGIN 1 tatatatata tatattgttt ggtacgagta gtacatacga aaatgtttgt gttacatgtc 61 taatgtgaca atttactact atcactgaat gaaatgaaca caaataaaca agcatgattg 121 ttgttcacag cggcccgcgt gaggacgcaa cccgtatcgg ctctgctggc gctgtgagga 181 ggcaggctgt ggatatct // LOCUS BABO01000010 661 bp DNA linear PLN 29-SEP-2015 DEFINITION Oryza sativa Japonica Group DNA, chromosome 1, contig: 10, cultivar: Koshihikari. ACCESSION BABO01000010 BABO01000000 VERSION BABO01000010.1 DBLINK BioProject:PRJDA39809 Sequence Read Archive:DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030 BioSample:SAMD00009497 KEYWORDS WGS. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. REFERENCE 1 (bases 1 to 661) AUTHORS Yano,M., Nagasaki,H. and Ebana,K. TITLE Direct Submission JOURNAL Submitted (06-AUG-2009) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M. TITLE Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms JOURNAL BMC Genomics 11, 267 (2010) REMARK Publication Status: Online-Only COMMENT Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa FEATURES Location/Qualifiers source 1..661 /chromosome="1" /cultivar="Koshihikari" /db_xref="taxon:39947" /mol_type="genomic DNA" /note="contig: 10" /organism="Oryza sativa Japonica Group" BASE COUNT 155 a 134 c 150 g 222 t ORIGIN 1 gtcaaccagg caatctacct cctcaccact ggcgccaggg agagtgcctt taggaacatc 61 aagaccattg ctgagtgcct tgctgatgag ctcatcaatg ccgccaaggg ctcatccaac 121 aggtaaatct tgcttctcat ttgatgaaat gaggctactg acacatccat gctctaattc 181 tgatatgtta cagctatgcc atcaagaaga aggatgagat tgagcgtgtt gccaaggcga 241 accgttgagt gctgaaccca tctcagtgtg ctcgagctat tgccttgcac tgttgccagt 301 actttttgct agtctttttg ggctttgcca gagttacctg tgattttctg tttaatgata 361 agtgctgaga aaatgtagta gtctgttcgc tatcgacatt gttttattac acccccaatc 421 cttgttcctg catgatctga gttctttatg tgtgattgac tgatgattgg ttctgtttct 481 gattatgtta cttgaatttc aagctgtaga tgatagctta gattaggttc attatgttta 541 ctcgacttag gatgtgttcg tttgggtgat agggagtgat aatgcacatc gttttccgcg 601 cgcacgcttc ccaaactact aaatggtgtg taaatggtgt gttttttgca aaaattttct 661 a //