LOCUS AY212879 5897 bp DNA linear HUM 18-JAN-2003 DEFINITION Homo sapiens v-fos FBJ murine osteosarcoma viral oncogene homolog (FOS) gene, complete cds. ACCESSION AY212879 VERSION AY212879.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5897) AUTHORS Rieder,M.J., Livingston,R.J., Daniels,M.R., Montoya,M.A., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (08-JAN-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..5897 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 87 /frequency="0.01" /replace="a" variation 120 /frequency="0.01" /replace="c" variation 543 /frequency="0.02" /replace="g" variation 546 /frequency="0.04" /replace="a" variation 801 /frequency="0.07" /replace="g" variation 838 /frequency="0.01" /replace="a" variation 954 /frequency="0.01" /replace="a" gene 1038..4420 /gene="FOS" mRNA join(1038..1333,2087..2338,2770..2877,2993..4420) /gene="FOS" /product="v-fos FBJ murine osteosarcoma viral oncogene homolog" variation 1058 /gene="FOS" /frequency="0.26" /replace="t" variation 1133 /gene="FOS" /frequency="0.25" /replace="c" CDS join(1193..1333,2087..2338,2770..2877,2993..3634) /gene="FOS" /codon_start=1 /product="v-fos FBJ murine osteosarcoma viral oncogene homolog" /protein_id="AAO21129.1" /translation="MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPV NAQDFCTDLAVSSANFIPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFGVPAPS AGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRE LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSV ASLDLTGGLPEVATPESEEAFTLPLLNDPEPKPSVEPVKSISSMELKTEPFDDFLFPA SSRPSGSETARSVPDMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSC TAYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL" variation 1401 /gene="FOS" /frequency="0.06" /replace="a" variation 1651 /gene="FOS" /frequency="0.07" /replace="t" variation 2197 /gene="FOS" /frequency="0.23" /replace="c" variation 2376 /gene="FOS" /frequency="0.05" /replace="a" variation 2625 /gene="FOS" /frequency="0.10" /replace="t" variation 2765 /gene="FOS" /frequency="0.14" /replace="c" variation 2918 /gene="FOS" /frequency="0.78" /replace="" variation 3337 /gene="FOS" /frequency="0.02" /replace="g" variation 3472 /gene="FOS" /frequency="0.02" /replace="a" variation 4115 /gene="FOS" /frequency="0.01" /replace="t" variation 4551 /frequency="0.01" /replace="t" variation 4583 /frequency="0.01" /replace="c" variation 4709 /frequency="0.01" /replace="g" variation 4991 /frequency="0.01" /replace="t" repeat_region 4999..5289 /rpt_family="Alu" /rpt_type=dispersed variation 5060 /frequency="0.13" /replace="t" variation 5076 /frequency="0.04" /replace="c" variation 5123 /frequency="0.01" /replace="g" variation 5164 /frequency="0.01" /replace="c" variation 5223 /frequency="0.13" /replace="t" variation 5301 /frequency="0.23" /replace="c" variation 5320 /frequency="0.04" /replace="c" variation 5382 /frequency="0.05" /replace="a" variation 5506 /frequency="0.01" /replace="t" variation 5574 /frequency="0.93" /replace="" variation 5577 /frequency="0.03" /replace="c" variation 5613 /frequency="0.06" /replace="c" variation 5613 /frequency="0.16" /replace="g" variation 5708 /frequency="0.14" /replace="t" variation 5740 /frequency="0.02" /replace="g" variation 5790 /frequency="0.01" /replace="c" variation 5827 /frequency="0.04" /replace="c" BASE COUNT 1387 a 1517 c 1521 g 1472 t ORIGIN 1 cttgtcatcc cgaactgacc accctgccca cataaccaca cctcgcactc cctacccctg 61 gggcccagct cagaaccggg cagacacccc cttcaaatgt cttcgcacgt aggttttgca 121 cagtgtttat ctgctggtgt ctcagggatt tgacagtttc cttaatattc ccacacatgg 181 ccgagaaaaa taaataaata aatgcgctgt cttctttaaa aaaataaata aataaagtac 241 ccagtatcgt aaagtaggtt atcgtattct cttattttgg atcctccact ttctgcttcc 301 aaacgcagga acagtgctag tattgctcga gcccgagggc tggaggttag gggatgaagg 361 tctgcttcca cgctttgcac tgaattaggg ctagaattgg ggatgggggt aggggcgcat 421 tccttcggga gccgaggctt aagtcctcgg ggtcctgtac tcgatgccgt ttctcctatc 481 tctgagcctc agaactgtct tcagtttccg tacaagggta aaaaggcgct ctctgcccca 541 tcccccccga cctcgggaac aagggtccgc attgaaccag gtgcgaatgt tctctctcat 601 tctgcgccgt tcccgcctcc cctcccccag ccgcggcccc cgcctccccc cgcactgcac 661 cctcggtgtt ggctgcagcc cgcgagcagt tcccgtcaat ccctcccccc ttacacagga 721 tgtccatatt aggacatctg cgtcagcagg tttccacggc ctttccctgt agccctgggg 781 ggagccatcc ccgaaacccc tcatcttggg gggcccacga gacctctgag acaggaactg 841 cgaaatgctc acgagattag gacacgcgcc aaggcggggg cagggagctg cgagcgctgg 901 ggacgcagcc gggcggccgc agaagcgccc aggcccgcgc gccacccctc tggcgccacc 961 gtggttgagc ccgtgacgtt tacactcatt cataaaacgc ttgttataaa agcagtggct 1021 gcggcgcctc gtactccaac cgcatctgca gcgagcaact gagaagccaa gactgagccg 1081 gcggccgcgg cgcagcgaac gagcagtgac cgtgctccta cccagctctg cttcacagcg 1141 cccacctgtc tccgcccctc ggcccctcgc ccggctttgc ctaaccgcca cgatgatgtt 1201 ctcgggcttc aacgcagact acgaggcgtc atcctcccgc tgcagcagcg cgtccccggc 1261 cggggatagc ctctcttact accactcacc cgcagactcc ttctccagca tgggctcgcc 1321 tgtcaacgcg caggtaaggc tggcttcccg tcgccgcggg gccgggggct tggggtcgcg 1381 gaggaggaga caccgggcgg gacgctccag tagatgagta gggggctccc ttgtgcctgg 1441 agggaggctg ccgtggccgg agcggtgccg gctcgggggc tcgggacttg ctctgagcgc 1501 acgcacgctt gccatagtaa gaattggttc ccccttcggg aggcaggttc gttctgagca 1561 acctctggtc tgcactccag gacggatctc tgacattagc tggagcagac gtgtcccaag 1621 cacaaactcg ctaactagag cctggcttct ccggggaggt ggcagaaagc ggcaatcccc 1681 cctcccccgg cagcctggag cacggaggag ggatgaggga ggagggtgca gcgggcgggt 1741 gtgtaaggca gtttcattga taaaaagcga gttcattctg gagactccgg agcggcgcct 1801 gcgtcagcgc agacgtcagg gatatttata acaaaccccc tttcaagcaa gtgatgctga 1861 agggataacg ggaacgcagc ggcaggatgg aagagacagg cactgcgctg cggaatgcct 1921 gggaggaaaa gggggagacc tttcatccag gatgagggac atttaagatg aaatgtccgt 1981 ggcaggatcg tttctcttca ctgctgcatg cggcactggg aactcgcccc acctgtgtcc 2041 ggaacctgct cgctcacgtc ggctttcccc ttctgttttg ttctaggact tctgcacgga 2101 cctggccgtc tccagtgcca acttcattcc cacggtcact gccatctcga ccagtccgga 2161 cctgcagtgg ctggtgcagc ccgccctcgt ctcctctgtg gccccatcgc agaccagagc 2221 ccctcaccct ttcggagtcc ccgccccctc cgctggggct tactccaggg ctggcgttgt 2281 gaagaccatg acaggaggcc gagcgcagag cattggcagg aggggcaagg tggaacaggt 2341 gaggaactct agcgtactct tcctgggaat gtgggggctg ggtgggaagc agccccggag 2401 atgcaggagc ccagtacaga ggatgaagcc actgatgggg ctggctgcac atccgtaact 2461 gggagccctg gctccaagcc cattccatcc caactcagac tctgagtctc accctaagaa 2521 gtactctcat agtttcttcc ctaagtttct taccgcatgc tttcagactg ggctcttctt 2581 tgttctcttg ctgaggatct tattttaaat gcaagtcaca cctagtctgc aactgcaggt 2641 cagaaatggt ttcacagtgg ggtgccagga agcagggaag ctgcaggagc cagttctact 2701 ggggtgggtg aatggaggtg atggcagaca cttttactga atgtcggtct ttttttgtga 2761 ttattctagt tatctccaga agaagaagag aaaaggagaa tccgaaggga aaggaataag 2821 atggctgcag ccaaatgccg caaccggagg agggagctga ctgatacact ccaagcggta 2881 ggtactctgt gggttgctcc tttttaaaac ttaaggggaa agttggagat tgagcataag 2941 ggcccttgag taagactgtg tcttatgctt tcctttatcc ctctgtatac aggagacaga 3001 ccaactagaa gatgagaagt ctgctttgca gaccgagatt gccaacctgc tgaaggagaa 3061 ggaaaaacta gagttcatcc tggcagctca ccgacctgcc tgcaagatcc ctgatgacct 3121 gggcttccca gaagagatgt ctgtggcttc ccttgatctg actgggggcc tgccagaggt 3181 tgccaccccg gagtctgagg aggccttcac cctgcctctc ctcaatgacc ctgagcccaa 3241 gccctcagtg gaacctgtca agagcatcag cagcatggag ctgaagaccg agccctttga 3301 tgacttcctg ttcccagcat catccaggcc cagtggctct gagacagccc gctccgtgcc 3361 agacatggac ctatctgggt ccttctatgc agcagactgg gagcctctgc acagtggctc 3421 cctggggatg gggcccatgg ccacagagct ggagcccctg tgcactccgg tggtcacctg 3481 tactcccagc tgcactgctt acacgtcttc cttcgtcttc acctaccccg aggctgactc 3541 cttccccagc tgtgcagctg cccaccgcaa gggcagcagc agcaatgagc cttcctctga 3601 ctcgctcagc tcacccacgc tgctggccct gtgagggggc agggaagggg aggcagccgg 3661 cacccacaag tgccactgcc cgagctggtg cattacagag aggagaaaca catcttccct 3721 agagggttcc tgtagaccta gggaggacct tatctgtgcg tgaaacacac caggctgtgg 3781 gcctcaagga cttgaaagca tccatgtgtg gactcaagtc cttacctctt ccggagatgt 3841 agcaaaacgc atggagtgtg tattgttccc agtgacactt cagagagctg gtagttagta 3901 gcatgttgag ccaggcctgg gtctgtgtct cttttctctt tctccttagt cttctcatag 3961 cattaactaa tctattgggt tcattattgg aattaacctg gtgctggata ttttcaaatt 4021 gtatctagtg cagctgattt taacaataac tactgtgttc ctggcaatag tgtgttctga 4081 ttagaaatga ccaatattat actaagaaaa gatacgactt tattttctgg tagatagaaa 4141 taaatagcta tatccatgta ctgtagtttt tcttcaacat caatgttcat tgtaatgtta 4201 ctgatcatgc attgttgagg tggtctgaat gttctgacat taacagtttt ccatgaaaac 4261 gttttattgt gtttttaatt tatttattaa gatggattct cagatattta tatttttatt 4321 ttattttttt ctaccttgag gtcttttgac atgtggaaag tgaatttgaa tgaaaaattt 4381 aagcattgtt tgcttattgt tccaagacat tgtcaataaa agcatttaag ttgaatgcga 4441 ccaaccttgt gctcttttca ttctggaagt cttgtaagtt tctgaaaggt attattggag 4501 accagtttgt caagaagggt agctgctgga gggggacaca ccctctgtct gatcccttat 4561 caaagaggac aaggaaacta tagagctgat tttagaatat tttacaaata catgccttcc 4621 attggaatgc taagattttc tactgcttct ggggacggga aaccgctgtg taacagcttt 4681 tgtgggaata cattttttct gtttcagtac tcgcaggggg aaatatttaa attttgttgt 4741 gctaatatta aattcagatg ttttgatctt aaaggaaccc tttaagcaaa cagaacctag 4801 ctttgtacag actattttaa ctttttattc tcacaaaatc acgtggaggg ttattctact 4861 tcaaagatga gcaaattgaa gaatggttag aataaacaac tttcttgata ttccgttatc 4921 ggcattagaa tcttcctgct cgttatcgta tccagcaggc tgaactgcct cttgatactt 4981 ggttaaaaaa aattttcagg ccgggcgcgg tggcccatgc ctgtaatcct agcactttgg 5041 gaggccgagg caggcggatc acctgaggtc gggagttcga gaccagcctg accaacatgg 5101 agaaaccccg tctttactaa aaatacaaaa ttagcctggt gtggtggtgc atgcctgtaa 5161 tcctagctac ttgagaggct gagacaggaa aatcacttga actcgggagg cggatgttgc 5221 agcgaactga gattgcgcca ttgcactcca gcctgggcaa caagattgaa actctgttta 5281 aaaaaaaaag ttttcactaa tgtgtacatt tttttgtact cttttattct cgaaagggaa 5341 ggagggctat tgccctatcc cttattaata aatgcattgt ggtttctggt ttctctaata 5401 ccatatgccc ttcattcagt ttatagtggg cggaagtggg ggagaaaaag ttgctcagaa 5461 atcaaaagat atctcaaaca gcacaaataa tggctgatcg ttctgcaaac aaaaagttac 5521 ataatagctc aagaaggaga agtcaacatg actctgaaca agctttaact tagaaaactt 5581 tatcatctta aggaagaacg tgacctttgt ccaggacgtc tctggtaatg gggcacttac 5641 acacacatgc acacgtacaa accacaggga aaggagaccg cccttctgcc tctgctcgcg 5701 agtatcacgc aggcaccatg cactatgttt tcacacacac tgggtggaag aagagcttca 5761 gcgccagtct tctaatgctt tggtgataat gaaaatcact gggtgcttat ggggtgtcat 5821 attcaatcga gttaaaagtt ttaattcaaa atgacagttt tactgaggtt gatgttctcg 5881 tctatgatat ctctgcc //