LOCUS AY039965 1512 bp mRNA linear PLN 18-SEP-2002
DEFINITION Arabidopsis thaliana putative 26S proteasome AAA-ATPase subunit
RPT6a (At5g20000) mRNA, complete cds.
ACCESSION AY039965
VERSION AY039965.1
KEYWORDS FLI_CDNA.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1512)
AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L.,
Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J.,
Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B.,
Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T.,
Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K.,
Davis,R.W., Ecker,J.R. and Theologis,A.
TITLE Arabidopsis Full Length cDNA Clones
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1512)
AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
Dale,J.M., Gibson,H.A., Goldsmith,A.D., Jiang,P.X., Lee,J.M.,
Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Carninci,P.,
Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A.,
Karlin-Neumann,G., Kawai,J., Kim,C., Koesema,E., Lam,B., Lin,J.,
Meyers,M.C., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J.,
Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Tracy,S.E.,
Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A.
TITLE Direct Submission
JOURNAL Submitted (11-JUN-2001) Plant Gene Expression Center, 800 Buchanan
Street, Albany, CA 94710, USA
COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the
collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
Hayashizaki,Y. and Shinozaki,K.
The Salk, Stanford, PGEC (SSP) Consortium members carried out the
sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Dale,J.M., Gibson,H.A.,
Goldsmith,A.D., Jiang,P.X., Lee,J.M., Quach,H.L., Tang,C.C.,
Toriumi,M., Yu,G., Bowser,L., Chen,H., Cheuk,R., Jones,T.,
Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C.,
Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A.,
Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A.
Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
contributed equally to this work as PIs.
Annotation is based on the January 2002 version of the Arabidopsis
genome submitted to GenBank.
FEATURES Location/Qualifiers
source 1..1512
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/clone="RAFL05-07-D23 (R10022)"
/ecotype="Columbia"
/note="This clone is in a modified pBluescript vector
(Lambda ZAP) as a XhoI/SstI insert."
gene 1..1512
/gene="At5g20000"
5'UTR 1..78
/gene="At5g20000"
CDS 79..1338
/gene="At5g20000"
/experiment="experimental evidence, no additional details
recorded"
/codon_start=1
/product="putative 26S proteasome AAA-ATPase subunit
RPT6a"
/protein_id="AAK64142.1"
/translation="MAAVGVEARPPVTAMEETCNVKGAAAKQGEGLNKYYLQHLDELQ
RLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVH
PEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTY
DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH
TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSG
NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPN
EESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVT
QEDFEMAVAKVMKKDTEKNMSLRKLWK"
3'UTR 1339..1512
/gene="At5g20000"
misc_difference 1496
/gene="At5g20000"
/note="not present in genomic sequence"
BASE COUNT 446 a 278 c 379 g 409 t
ORIGIN
1 ccctgtgatc tatctttgaa tctcaaaagc atacttgaga gagatctgtt tcgataattt
61 gcttcaatca ccgtgttaat ggcggccgta ggagtggagg cgagacctcc tgtgacagcg
121 atggaggaaa cctgcaacgt taagggagcg gcggcgaaac aaggagaagg gcttaacaag
181 tactacctcc agcatctcga tgagctccag cgcctgcaac gcgaaaagtc gtataacctt
241 aatcgtcttg aagctcagag gaatgaactc aattctcgag tacgaatgct cagagaagag
301 ttacagctcc ttcaagaacc tgggtcctat gtgggtgaag tggtaaaagt gatgggaaaa
361 aacaaggtct tggttaaggt tcatccagag gggaagtatg ttgtcgatat tgacaaaagt
421 atagacataa cgaaactcac tccatcaacg agagttgctc tccgtaatga tagctatgtt
481 ctccacctgg ttctgccaag taaagtagat cccttggtta accttatgaa agttgagaag
541 gttccagact ccacatatga catgattggt ggtcttgacc agcaaatcaa ggaaataaag
601 gaggtcattg aactgccaat caagcatcct gaattgtttg agtctcttgg aattgcgcag
661 ccaaagggtg tgttgttgta cggtccacct ggaactggga agacactatt ggctcgggct
721 gtggcacatc acactgactg tactttcatc agagtttctg gttctgagct ggtccagaaa
781 tacattggag aaggttctag aatggtcaga gaactttttg tgatggcaag ggagcatgca
841 ccatcaatca tcttcatgga tgaaatcgat agtatcgggt ctgctcgtat ggaatctggt
901 agtggaaatg gtgacagtga ggtgcaaagg actatgcttg agcttctcaa tcaacttgac
961 ggattcgagg cgtcaaacaa aatcaaggtt ttgatggcta caaatcgtat tgatattctg
1021 gatcaagctc ttctccggcc tggaaggatt gataggaaaa ttgaatttcc taatcctaat
1081 gaagagtcac gttttgatat cttgaagata cactcaagga aaatgaattt gatgcgtgga
1141 atcgatctga aaaagattgc agagaagatg aatggtgctt caggtgctga gctgaaggct
1201 gtatgcacgg aggcgggcat gtttgcactt cgtgagagga gagtacatgt gactcaggaa
1261 gactttgaga tggctgtggc gaaggtaatg aagaaagaca cagagaagaa catgtctctg
1321 cgtaagctct ggaagtagga atttcagagt cacagattaa tttcgattat ttcttctcta
1381 ctgtctgtgg ttctttctga aaccttttcg gctagcgctt taagcttttc taaacaatgt
1441 ttgtacacta gtttctattc attcaaatgg ttgttcagca taacatcttc gattctaaaa
1501 aaaaaaaaaa aa
//