LOCUS       AP013907                7456 bp    DNA     linear   HTG 30-OCT-2015
DEFINITION  Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
            G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S46-C288, *** SEQUENCING IN
            PROGRESS ***.
ACCESSION   AP013907
VERSION     AP013907.1
DBLINK      BioProject:PRJDB1484
KEYWORDS    ENV; HTG; HTGS_PHASE2.
SOURCE      uncultured Mediterranean phage uvMED
  ORGANISM  uncultured Mediterranean phage uvMED
            Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
            Caudoviricetes; environmental samples.
REFERENCE   1  (bases 1 to 7456)
  AUTHORS   Mizuno,C.M. and Ghai,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
            Contact:Rohit Ghai
            Universidad Miguel Hernandez, Evolutionary Genomics Group,
            Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
            Alicante, Alicante 3550, Spain
REFERENCE   2
  AUTHORS   Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
  TITLE     Expanding the Marine Virosphere Using Metagenomics
  JOURNAL   PLoS Genet. 9, e1003987 (2013)
  REMARK    Publication Status: Online-Only
            DOI:10.1371/journal.pgen.1003987
COMMENT     URL:http://egg.umh.es
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.2.03
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7456
                     /clone_lib="MedDCM-OCT"
                     /collection_date="2007-10-15"
                     /country="Spain"
                     /db_xref="taxon:1407671"
                     /environmental_sample
                     /isolate="uvMED-CGF-C1C-MedDCM-OCT-S46-C288"
                     /isolation_source="metagenomic fosmid library constructed
                     from the 0.2-5um-size plankton collected from the deep
                     chlorophyll maximum in the Mediterranean Sea off the
                     coast of Alicante, Spain, 50m below sea surface"
                     /lat_lon="38.4 N 0.13 W"
                     /mol_type="genomic DNA"
                     /organism="uncultured Mediterranean phage uvMED"
     CDS             complement(283..534)
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22927.1"
                     /transl_table=11
                     /translation="MPQLHGNKAHLHILIDPNRAELVFEKAAEADQRPAAWIREAVYS
                     ELKRVYPTSVYNEAMAKDQVQWRSSIRNRVEGRANQKDI"
     CDS             complement(692..850)
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22928.1"
                     /transl_table=11
                     /translation="MISIYRTDRGWYSNFGGTVTYHQDFGEAMDAAYRQATRDGALKQ
                     SDPDSNNG"
     CDS             complement(850..2673)
                     /codon_start=1
                     /product="DNA polymerase"
                     /protein_id="BAR22929.1"
                     /transl_table=11
                     /translation="MSYEVLFGMEHLSKLDTAISVCFDTETCQLQPEMGKLRLLQLGC
                     ETRKIIVVIDFFQTDESDWDRLRRFFSNGERHWLAHNAVFDIAWLQEYGIHPNTRFLG
                     CSMLASRLLSNGKTGRKHGLADVVKEYLKINLDKEQQKSNWSGVLTQEQLIYAAKDVE
                     VLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLDYEHDI
                     KELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQQLK
                     SKLSAVLGVKLESVSKNALSEFAGHHPVVQMYLNWKKAEKRRQMITSIQEKMRPDGFV
                     KASYMQLGAETGRMTCFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAV
                     AQDKKMIQAFKDGEDLHTVTAEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM
                     TLEEAQKVRSDWFQEFEGIAKWHKKENDKANNPNPRFKGKKCGIQFIEIPETGMRRDL
                     PGDANRLTVRCNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVRE
                     DAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQETH"
     CDS             complement(2670..2927)
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22930.1"
                     /transl_table=11
                     /translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKIR
                     TAAGWEEDEDGWYAPHPENPGEMISEWDWMDFGLSYPEDVK"
     CDS             complement(2961..3224)
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22931.1"
                     /transl_table=11
                     /translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ
                     DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ"
     CDS             complement(3286..3531)
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22932.1"
                     /transl_table=11
                     /translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS
                     PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN"
     CDS             complement(3699..6128)
                     /codon_start=1
                     /product="bifunctional DNA primase/polymerase"
                     /protein_id="BAR22933.1"
                     /transl_table=11
                     /translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH
                     RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP
                     VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY
                     KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS
                     VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE
                     AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM
                     KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS
                     KVEKRDFLIPDVLATPAVVVLYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG
                     GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKREPKIVIID
                     SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD
                     AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT
                     AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVSRG
                     LITTHGAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDGAVFAMGQA
                     MGQQPRSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID
                     QLMREAGSKWD"
     CDS             6277..6861
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="BAR22934.1"
                     /transl_table=11
                     /translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF
                     YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN
                     FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK
                     KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD"
BASE COUNT         1695 a         2096 c         1762 g         1903 t
ORIGIN      
        1 ccatggatgc acgacgtaat acacatgcag caggatggtg cgtaccatgc ggaaaagtgc
       61 gtcttgcggg acaccgacag cctgcagtaa ttaaaaagct actgatacaa tttctaatgg
      121 tcggcgtatc ttactcagaa tagtttgagc ttggttaaaa ctgttgtaac tgcaggcatc
      181 tgaggcggtt atagtccaaa aagtgtcgcc agagttttca taataggccg ataaaaacat
      241 ggactcggaa tcggccactt tgagtgcaaa gcgcataaaa agttagatgt ctttctggtt
      301 agctcggcct tcgactctgt tgcgaatgga cgagcgccat tgcacttgat ctttggccat
      361 agcctcgttg taaacgctag tcggataaac ccgctttagc tcggaataca cagcttctct
      421 tatccaagcc gctgggcgct ggtctgcctc agccgctttt tcgaagacaa gctccgctct
      481 gttggggtca ataaggatgt gtagatgcgc tttgttgccg tgaagctgcg gcatgtgcct
      541 caaattgcta caacaatgtt accacgtaat agagtcatcg actttatttt tccaagcagt
      601 gctttgggcg cggcgagctt gagcgcgttg gttggtacag cccgctctta cctcacgcgc
      661 cccttctaaa aacatcgcgg cccgctgcag atcacccgtt gttgctgtct ggatcgcttt
      721 gtttaagcgc tccatcacga gttgcctgcc tgtacgcggc atccatcgct tccccaaagt
      781 cttggtggta cgttaccgtc cctccaaagt tcgagtacca gcctcgatca gtgcggtaga
      841 tgctgatcat cagtgagtct cctgccaggt tttgccgaaa gacacctcag ccaaagcagg
      901 gatctcgccc agccatttgg cctctgcctc ttccatcacc tgttttaagg tggctgccca
      961 ctcttcagct gcatcctccc taacaagcaa caaaatttcg tcatgcaccg cagccgcgat
     1021 gcggaccgtt tcttcccccg cctctctaac aagcggccac agcttgccca aagcctgctt
     1081 gagaatcgcc gcaccagcgc cctgaacagg tgtattacag cgaacagtta ggcggttagc
     1141 gtcaccaggc agatctctcc tcataccagt ttcaggtatt tctataaact gaataccgca
     1201 cttcttgccc ttaaatctag ggttagggtt attagctttg tcgttctctt tcttgtgcca
     1261 tttagctata ccttcaaact cttgaaacca gtcggaccta actttctgcg cttcttccaa
     1321 cgtcatgctt acgttgctgc ccgcagcata attacgaaga cccttagctc cggacccata
     1381 cagaagacca aaattggcag acttggcaat ctggcgcgta cacccaatag cttcagctgt
     1441 cactgtgtgc aagtcttccc cgtctttgaa tgcctggatc attttcttgt cctgcgccac
     1501 agccgccgct aaacgcagct ccatctggcc aaagtcagcg tcaacaatta gccagccctt
     1561 cggagcttct acgcaaccac gaaactgttt gtccttaggt atctgctgat tgttcgggtt
     1621 gaagcacgtc atacgtcctg tttcagcgcc taactgcatg taactggctt ttacaaaccc
     1681 atccgggcgc atcttctcct ggatcgaagt aatcatttgc cgtctttttt cagctttctt
     1741 ccagttcaaa tacatctgaa caacagggtg atgtccagca aactcgctaa gcgcattttt
     1801 agacacactc tcaagcttta cccccagaac agcagataac ttacttttca gttgctgagg
     1861 actatttaaa ttaaagccct taagcttttt agttcctgct ctgacgctac cctcgtcctt
     1921 ggcacgtaaa ttaaaagagt cgtcctcatc tctaggcagc ttttggcctt caggtaaagc
     1981 cgaatcaagc tccctgataa actctttcga cagctccttt atatcgtgtt cgtaatctaa
     2041 ctttctctgt gcgagatttt ctttgttcca tggcaggccc gtcctccaca tttgagccat
     2101 agcaggcaac gccttacact ccaatgtgaa ggcttccatt aaactgtatt gacaaagctc
     2161 gtccttcaag attcggtcta actcgcacaa aacctccaca tcttttgcag cgtaaattaa
     2221 ctgctcttga gttaaaactc ccgaccagtt tgacttttgc tgctccttat ctaagttaat
     2281 ttttaaatac tcttttacaa catctgcgag accgtgcttc ctgccagttt ttccgttaga
     2341 taacaagcgg ctggcaagca tggagcagcc gagaaaccgc gtatttgggt ggattccata
     2401 ttcttgcaac cacgcaatat caaacacagc gttatgggca agccagtggc gctctccatt
     2461 gctgaagaag cgccgcaaac gatcccagtc gctttcatct gtttgaaaaa agtcgatgac
     2521 aacaataatc ttccgggttt cgcagccaag ctgaagcagc cgcagctttc ccatctctgg
     2581 ctgaagctgg cacgtctccg tgtcaaagca gacgcttata gccgtgtcta gcttggagag
     2641 gtgctccatg ccaaaaagaa cttcgtaact cacttcacgt cctccgggta ggagagacca
     2701 aagtccatcc aatcccactc agagatcatc tcgccagggt tttcaggatg tggagcgtac
     2761 cagccgtctt catcttcttc ccaaccggcg gctgtacgga ttttgtagat gcgatcgtgt
     2821 tccgccattg cggcttcgat ctcgtccagg tggtcgtacc acgtagggca cgtccccatc
     2881 atgcggagat tttcttgtgc tctatagaga gctgtggagt cagacatggg tagtgtcgtg
     2941 aactccgtta gagtagcaca ctactgagtg accatgctct ccacaatagg aaaataatct
     3001 aagtcgtaga aagtcatcac agccacgtca acgccgcatt cgagagctgc ggtaacctgc
     3061 gtttcaaaat ctctaaaccc cctcatcgag tcctggtaag tgacctgctc aacagccagc
     3121 acgcgcgagc ggtcgtcgta gctagtaaac cgcactaaag ctaagacgtc agagtcagtc
     3181 aactcctgca ccttgcagta gataaatttg acatctgtgt tcatgcaggc aaacccccta
     3241 tctggagtat gggtactcat accaaaaaac aagccacgga gccgtttaat taaccacttc
     3301 atttacaaca cacatgacga tgtgctcgac cttgcggtgg tctacgccgt gacctgctct
     3361 acgacgaact ttttgaacaa gctcatggat gtctttcgga ctgactagcc gctcttcagc
     3421 agaaaaaacc cgttgtctga tcaacctgga acgggaaacg ccaagtaagt ctgcttcttt
     3481 tttcaagcgt tccaggtcgg cttctgggaa agcaactttt acttctcgca tggtcgaaag
     3541 tctttactcc aatacagtag cacattaacg ctgcttggct tttttgcgaa gctcacggat
     3601 gtagtcccgt tcagcaaaaa gctctttcca gtcgtgggga ggttctggca tccattcctg
     3661 gagcttggcc tcccatttct gaaaccgctg tttatcggtc agtcccactt agaccccgct
     3721 tcacgcatca actgatcaat ctccgcgaaa gatcgcctcg cgcggggata ttgatctgac
     3781 tgtcccattg gggcagatcc cttggtatca gacgctttag caatgggaca cccagcctct
     3841 ttttcagaaa ctgtcccatt gctctcgggt gaatgggaca cctcctccga tcttggctgt
     3901 tgtcccattg cttgtcccat tgcaaaaacc gcgccatcac aaggtttttc ccccaatggg
     3961 acactatctt caacctctcc gcgcacgcgc gtgtgtgggg gttgttcaac aacagctgtg
     4021 taaagcagtg gagctttacc gcctttctgc cctggaacag cagccccgtg ggtcgttatc
     4081 aagccccgac taacccagcg ttgaagcgct ttacggattg ctgtgacatt gcccccaaca
     4141 atcgggtccg cgttcagctc tgttcggctg atggagcgtg ggtagatcgc tctaacgcgc
     4201 gacagaacgc gatcagtaat tccgctaggc gacgtgtcgg tgctgtcgat ctctgcggtg
     4261 aaatccgcga ttgagaaagt caggtcagac tcctggcgca taatcagcgc cgtgccgctc
     4321 ctaccactac ggctcttctc aacatgaatg atccggctgt gccgtggagc gatgccctgc
     4381 tcgatctgct tgtccgtggg ctcagcaagc ctccaggtct ctgtaacggc gtcacggatc
     4441 gctgaggtgc ctctgaagcc gccttgcttg ttggcgtggt gaatgatcag gatggtggtc
     4501 cgtgggaaca gagtgccgtt gtttctggtc agccaataca gcggcgtagc gaagtcggat
     4561 ttgttctcgt caaacgcccg accaccagag cagccaatca gggagtcgat gatcacgatt
     4621 ttcggttccc gctttttcag caaattttga aactgggcgt aatttcccaa attccagttg
     4681 ggctcaatat gcacatcttt tgtgcgcgga aactcaacct catccagctg atcatccaaa
     4741 tcagccaacg gctggtcgcc gttaagaatt acgcaaccac ctttcgccac tggagcatgc
     4801 ttgccccgaa caacaaaagg tgatccggta acaacgtgct tagccagcgt ccaagcagca
     4861 gtggatttgc ccttaccacc ttccgcatag agtacgacta ctgcgggtgt tgccagaacg
     4921 tcaggaatta agaagtcgcg tttttcaacc ttcgatttaa gttcatccaa ggtgaaccca
     4981 cctgtgtctt ctatgtatcc aatgtgatca acgtaaacac cttcaagttt tgactggtcc
     5041 ttgtaacccg cctcgttttt aatacgattt atctcataat tacgtctgcc tggattttca
     5101 atatccatgg cttccttcat ctgcttcatc gcctcgtcat acgagagggt ctcctgcctg
     5161 taacggatcg gcgctgtttc gatctctgcc accaccgatg caagattgtt cccttgaaat
     5221 cgagccttct ctgggtcgta gtgattagcc aggtgcatca agctgccaaa ccccagccct
     5281 ccgtcagctt tgaagcccgc ctcccagcga tcagcgcagg gatcgccgtt cttccagtcg
     5341 tcgctgtact cctcgtcttt ctgcgaccac tgccgccaga tgtttaagcc gtcttcatcc
     5401 ggcatctcgg agtgcagcat cgcgccgatc cgccaccaga agtcatcaga cccacgtccc
     5461 tgcggtggaa tgacagacaa gcagttttca gcgatggcaa ttttctcctc cctggaacgg
     5521 cagctgtaac gcaggtcttt cctttgcgct ccgcttgttc cctcctgccg cttcttaaac
     5581 gactcctcca tctccaccag aagccactca ggagcctctg gaatggcgtt cacatcgcct
     5641 gaaagcttgt actccccgcc ttggtagtaa gcacccccta caaggccctg acggcgtatg
     5701 ccccacagaa cctcccaacc ctgtttgctg gcagccaagc tgatcccagc aacctggccc
     5761 catttctcct taggcacccg aaacaggtat ttagcggcat tctttttcgg agaaaccaca
     5821 acaggagcct ccttgagggt ggctccccac ttccttttca acgacgcaag gttggcgtca
     5881 acatcaagga tcaccagacc gtcgctgcgt ggacctgtaa acacgccgat cgccttgtac
     5941 gtgtctgggt gctgttcgat gtagcgagcg gaagcgtgag ggctgaggtt ctctctgtgc
     6001 gctcttccca gcggtgactt accgcaagcc acaccacctt tgtcgccggg cagcctgaag
     6061 ccctgggcat agatcggtgc agtggcccag tttttgggaa gagtccttgt gaaatcagcg
     6121 agattcattt gctacagtag tgccgttgaa ctttttacag acacccctgg aggcttctgc
     6181 ggccccaggg gttttttcat tctacagcag ttgacagccc ccgccattgt gctacgttta
     6241 tgaggcaccg ggcaacgtgc ccaccgcaat tttcaaatgc cttttctttc tcaaaaagcc
     6301 gtctcagcag tagccggagg cactggtggt ggttatctaa acccctccaa gatccaatcc
     6361 ggcagcaatg tgcgctttgc attgttgagc gaccagcctc ttgagtttta tgagtgctgg
     6421 ggcgaagcca gcgacggttc gctcaagcct tttcgttttt ctgaggatcc aaaatccgac
     6481 gacatcgagg ccgaaatggg tcctgattac acacggcgtc agaaccgtga tggcactgca
     6541 cccgagccag caaagttcgc tcttgctgtt cctgtataca acttcgatac agagggcgtg
     6601 cagattatgc agctcaccca aaaaagcatc atccgcgagt tggacggcat ttctcaaatg
     6661 gaggactacg ccaatctgct ggagcatgat tttgttctcg gcaaagaggg caacggcctt
     6721 aacaccgagt acagccttcg ccctgttccc cgtaagaagg gatcggataa ggcgattgac
     6781 agtgcctgga ctgaagccaa gggcgctgga tttgagattg gtcgcttgtt gactggcgaa
     6841 aacccattca aagccgactg atgttgtgcg gcaggactag aaaagtcatt aacttcgaat
     6901 tcttgcctgc ccgcaatttg cgctgcaact gctcgggccg tgcggttgtg tacgagggtg
     6961 caaattgcaa aagctcaggg ttctcaccgc agagtgctag tggttcctag gtactattca
     7021 tggctggtac taaggcagga gcgtccgtaa gtccgcattc aatacaaggg ggctttctag
     7081 ccccttttgt agtaagtaag cttgtaaaaa ctcagtgata gatgccagtc gatacccagg
     7141 acgcgttagc cggtttacgg cgctggaact tggtacgtga tgactcgggc tcccaccgcg
     7201 tttataggga cgaaaaaggc aacacatatg cgtcagtgac gcacattctc aaggaaacct
     7261 caccgcaatg gcaaaaagat gccctggacc gttggcttga aagacctact gctcccgctg
     7321 agcgtgacat tgcctgccag cgcgggactc ttgctcacga tcacgcggaa tatgtcctca
     7381 aaacggcagc caagctggcg cgtaacagcg ctaacaagcg aggaagctgg aggactggag
     7441 atgacggcct ggaacg
//