LOCUS AP013907 7456 bp DNA linear HTG 30-OCT-2015 DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S46-C288, *** SEQUENCING IN PROGRESS ***. ACCESSION AP013907 VERSION AP013907.1 DBLINK BioProject:PRJDB1484 KEYWORDS ENV; HTG; HTGS_PHASE2. SOURCE uncultured Mediterranean phage uvMED ORGANISM uncultured Mediterranean phage uvMED Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; environmental samples. REFERENCE 1 (bases 1 to 7456) AUTHORS Mizuno,C.M. and Ghai,R. TITLE Direct Submission JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases. Contact:Rohit Ghai Universidad Miguel Hernandez, Evolutionary Genomics Group, Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de Alicante, Alicante 3550, Spain REFERENCE 2 AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R. TITLE Expanding the Marine Virosphere Using Metagenomics JOURNAL PLoS Genet. 9, e1003987 (2013) REMARK Publication Status: Online-Only DOI:10.1371/journal.pgen.1003987 COMMENT URL:http://egg.umh.es ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.2.03 Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7456 /clone_lib="MedDCM-OCT" /collection_date="2007-10-15" /country="Spain" /db_xref="taxon:1407671" /environmental_sample /isolate="uvMED-CGF-C1C-MedDCM-OCT-S46-C288" /isolation_source="metagenomic fosmid library constructed from the 0.2-5um-size plankton collected from the deep chlorophyll maximum in the Mediterranean Sea off the coast of Alicante, Spain, 50m below sea surface" /lat_lon="38.4 N 0.13 W" /mol_type="genomic DNA" /organism="uncultured Mediterranean phage uvMED" CDS complement(283..534) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22927.1" /transl_table=11 /translation="MPQLHGNKAHLHILIDPNRAELVFEKAAEADQRPAAWIREAVYS ELKRVYPTSVYNEAMAKDQVQWRSSIRNRVEGRANQKDI" CDS complement(692..850) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22928.1" /transl_table=11 /translation="MISIYRTDRGWYSNFGGTVTYHQDFGEAMDAAYRQATRDGALKQ SDPDSNNG" CDS complement(850..2673) /codon_start=1 /product="DNA polymerase" /protein_id="BAR22929.1" /transl_table=11 /translation="MSYEVLFGMEHLSKLDTAISVCFDTETCQLQPEMGKLRLLQLGC ETRKIIVVIDFFQTDESDWDRLRRFFSNGERHWLAHNAVFDIAWLQEYGIHPNTRFLG CSMLASRLLSNGKTGRKHGLADVVKEYLKINLDKEQQKSNWSGVLTQEQLIYAAKDVE VLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLDYEHDI KELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQQLK SKLSAVLGVKLESVSKNALSEFAGHHPVVQMYLNWKKAEKRRQMITSIQEKMRPDGFV KASYMQLGAETGRMTCFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAV AQDKKMIQAFKDGEDLHTVTAEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM TLEEAQKVRSDWFQEFEGIAKWHKKENDKANNPNPRFKGKKCGIQFIEIPETGMRRDL PGDANRLTVRCNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVRE DAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQETH" CDS complement(2670..2927) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22930.1" /transl_table=11 /translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKIR TAAGWEEDEDGWYAPHPENPGEMISEWDWMDFGLSYPEDVK" CDS complement(2961..3224) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22931.1" /transl_table=11 /translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ" CDS complement(3286..3531) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22932.1" /transl_table=11 /translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN" CDS complement(3699..6128) /codon_start=1 /product="bifunctional DNA primase/polymerase" /protein_id="BAR22933.1" /transl_table=11 /translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS KVEKRDFLIPDVLATPAVVVLYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKREPKIVIID SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVSRG LITTHGAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDGAVFAMGQA MGQQPRSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID QLMREAGSKWD" CDS 6277..6861 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22934.1" /transl_table=11 /translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD" BASE COUNT 1695 a 2096 c 1762 g 1903 t ORIGIN 1 ccatggatgc acgacgtaat acacatgcag caggatggtg cgtaccatgc ggaaaagtgc 61 gtcttgcggg acaccgacag cctgcagtaa ttaaaaagct actgatacaa tttctaatgg 121 tcggcgtatc ttactcagaa tagtttgagc ttggttaaaa ctgttgtaac tgcaggcatc 181 tgaggcggtt atagtccaaa aagtgtcgcc agagttttca taataggccg ataaaaacat 241 ggactcggaa tcggccactt tgagtgcaaa gcgcataaaa agttagatgt ctttctggtt 301 agctcggcct tcgactctgt tgcgaatgga cgagcgccat tgcacttgat ctttggccat 361 agcctcgttg taaacgctag tcggataaac ccgctttagc tcggaataca cagcttctct 421 tatccaagcc gctgggcgct ggtctgcctc agccgctttt tcgaagacaa gctccgctct 481 gttggggtca ataaggatgt gtagatgcgc tttgttgccg tgaagctgcg gcatgtgcct 541 caaattgcta caacaatgtt accacgtaat agagtcatcg actttatttt tccaagcagt 601 gctttgggcg cggcgagctt gagcgcgttg gttggtacag cccgctctta cctcacgcgc 661 cccttctaaa aacatcgcgg cccgctgcag atcacccgtt gttgctgtct ggatcgcttt 721 gtttaagcgc tccatcacga gttgcctgcc tgtacgcggc atccatcgct tccccaaagt 781 cttggtggta cgttaccgtc cctccaaagt tcgagtacca gcctcgatca gtgcggtaga 841 tgctgatcat cagtgagtct cctgccaggt tttgccgaaa gacacctcag ccaaagcagg 901 gatctcgccc agccatttgg cctctgcctc ttccatcacc tgttttaagg tggctgccca 961 ctcttcagct gcatcctccc taacaagcaa caaaatttcg tcatgcaccg cagccgcgat 1021 gcggaccgtt tcttcccccg cctctctaac aagcggccac agcttgccca aagcctgctt 1081 gagaatcgcc gcaccagcgc cctgaacagg tgtattacag cgaacagtta ggcggttagc 1141 gtcaccaggc agatctctcc tcataccagt ttcaggtatt tctataaact gaataccgca 1201 cttcttgccc ttaaatctag ggttagggtt attagctttg tcgttctctt tcttgtgcca 1261 tttagctata ccttcaaact cttgaaacca gtcggaccta actttctgcg cttcttccaa 1321 cgtcatgctt acgttgctgc ccgcagcata attacgaaga cccttagctc cggacccata 1381 cagaagacca aaattggcag acttggcaat ctggcgcgta cacccaatag cttcagctgt 1441 cactgtgtgc aagtcttccc cgtctttgaa tgcctggatc attttcttgt cctgcgccac 1501 agccgccgct aaacgcagct ccatctggcc aaagtcagcg tcaacaatta gccagccctt 1561 cggagcttct acgcaaccac gaaactgttt gtccttaggt atctgctgat tgttcgggtt 1621 gaagcacgtc atacgtcctg tttcagcgcc taactgcatg taactggctt ttacaaaccc 1681 atccgggcgc atcttctcct ggatcgaagt aatcatttgc cgtctttttt cagctttctt 1741 ccagttcaaa tacatctgaa caacagggtg atgtccagca aactcgctaa gcgcattttt 1801 agacacactc tcaagcttta cccccagaac agcagataac ttacttttca gttgctgagg 1861 actatttaaa ttaaagccct taagcttttt agttcctgct ctgacgctac cctcgtcctt 1921 ggcacgtaaa ttaaaagagt cgtcctcatc tctaggcagc ttttggcctt caggtaaagc 1981 cgaatcaagc tccctgataa actctttcga cagctccttt atatcgtgtt cgtaatctaa 2041 ctttctctgt gcgagatttt ctttgttcca tggcaggccc gtcctccaca tttgagccat 2101 agcaggcaac gccttacact ccaatgtgaa ggcttccatt aaactgtatt gacaaagctc 2161 gtccttcaag attcggtcta actcgcacaa aacctccaca tcttttgcag cgtaaattaa 2221 ctgctcttga gttaaaactc ccgaccagtt tgacttttgc tgctccttat ctaagttaat 2281 ttttaaatac tcttttacaa catctgcgag accgtgcttc ctgccagttt ttccgttaga 2341 taacaagcgg ctggcaagca tggagcagcc gagaaaccgc gtatttgggt ggattccata 2401 ttcttgcaac cacgcaatat caaacacagc gttatgggca agccagtggc gctctccatt 2461 gctgaagaag cgccgcaaac gatcccagtc gctttcatct gtttgaaaaa agtcgatgac 2521 aacaataatc ttccgggttt cgcagccaag ctgaagcagc cgcagctttc ccatctctgg 2581 ctgaagctgg cacgtctccg tgtcaaagca gacgcttata gccgtgtcta gcttggagag 2641 gtgctccatg ccaaaaagaa cttcgtaact cacttcacgt cctccgggta ggagagacca 2701 aagtccatcc aatcccactc agagatcatc tcgccagggt tttcaggatg tggagcgtac 2761 cagccgtctt catcttcttc ccaaccggcg gctgtacgga ttttgtagat gcgatcgtgt 2821 tccgccattg cggcttcgat ctcgtccagg tggtcgtacc acgtagggca cgtccccatc 2881 atgcggagat tttcttgtgc tctatagaga gctgtggagt cagacatggg tagtgtcgtg 2941 aactccgtta gagtagcaca ctactgagtg accatgctct ccacaatagg aaaataatct 3001 aagtcgtaga aagtcatcac agccacgtca acgccgcatt cgagagctgc ggtaacctgc 3061 gtttcaaaat ctctaaaccc cctcatcgag tcctggtaag tgacctgctc aacagccagc 3121 acgcgcgagc ggtcgtcgta gctagtaaac cgcactaaag ctaagacgtc agagtcagtc 3181 aactcctgca ccttgcagta gataaatttg acatctgtgt tcatgcaggc aaacccccta 3241 tctggagtat gggtactcat accaaaaaac aagccacgga gccgtttaat taaccacttc 3301 atttacaaca cacatgacga tgtgctcgac cttgcggtgg tctacgccgt gacctgctct 3361 acgacgaact ttttgaacaa gctcatggat gtctttcgga ctgactagcc gctcttcagc 3421 agaaaaaacc cgttgtctga tcaacctgga acgggaaacg ccaagtaagt ctgcttcttt 3481 tttcaagcgt tccaggtcgg cttctgggaa agcaactttt acttctcgca tggtcgaaag 3541 tctttactcc aatacagtag cacattaacg ctgcttggct tttttgcgaa gctcacggat 3601 gtagtcccgt tcagcaaaaa gctctttcca gtcgtgggga ggttctggca tccattcctg 3661 gagcttggcc tcccatttct gaaaccgctg tttatcggtc agtcccactt agaccccgct 3721 tcacgcatca actgatcaat ctccgcgaaa gatcgcctcg cgcggggata ttgatctgac 3781 tgtcccattg gggcagatcc cttggtatca gacgctttag caatgggaca cccagcctct 3841 ttttcagaaa ctgtcccatt gctctcgggt gaatgggaca cctcctccga tcttggctgt 3901 tgtcccattg cttgtcccat tgcaaaaacc gcgccatcac aaggtttttc ccccaatggg 3961 acactatctt caacctctcc gcgcacgcgc gtgtgtgggg gttgttcaac aacagctgtg 4021 taaagcagtg gagctttacc gcctttctgc cctggaacag cagccccgtg ggtcgttatc 4081 aagccccgac taacccagcg ttgaagcgct ttacggattg ctgtgacatt gcccccaaca 4141 atcgggtccg cgttcagctc tgttcggctg atggagcgtg ggtagatcgc tctaacgcgc 4201 gacagaacgc gatcagtaat tccgctaggc gacgtgtcgg tgctgtcgat ctctgcggtg 4261 aaatccgcga ttgagaaagt caggtcagac tcctggcgca taatcagcgc cgtgccgctc 4321 ctaccactac ggctcttctc aacatgaatg atccggctgt gccgtggagc gatgccctgc 4381 tcgatctgct tgtccgtggg ctcagcaagc ctccaggtct ctgtaacggc gtcacggatc 4441 gctgaggtgc ctctgaagcc gccttgcttg ttggcgtggt gaatgatcag gatggtggtc 4501 cgtgggaaca gagtgccgtt gtttctggtc agccaataca gcggcgtagc gaagtcggat 4561 ttgttctcgt caaacgcccg accaccagag cagccaatca gggagtcgat gatcacgatt 4621 ttcggttccc gctttttcag caaattttga aactgggcgt aatttcccaa attccagttg 4681 ggctcaatat gcacatcttt tgtgcgcgga aactcaacct catccagctg atcatccaaa 4741 tcagccaacg gctggtcgcc gttaagaatt acgcaaccac ctttcgccac tggagcatgc 4801 ttgccccgaa caacaaaagg tgatccggta acaacgtgct tagccagcgt ccaagcagca 4861 gtggatttgc ccttaccacc ttccgcatag agtacgacta ctgcgggtgt tgccagaacg 4921 tcaggaatta agaagtcgcg tttttcaacc ttcgatttaa gttcatccaa ggtgaaccca 4981 cctgtgtctt ctatgtatcc aatgtgatca acgtaaacac cttcaagttt tgactggtcc 5041 ttgtaacccg cctcgttttt aatacgattt atctcataat tacgtctgcc tggattttca 5101 atatccatgg cttccttcat ctgcttcatc gcctcgtcat acgagagggt ctcctgcctg 5161 taacggatcg gcgctgtttc gatctctgcc accaccgatg caagattgtt cccttgaaat 5221 cgagccttct ctgggtcgta gtgattagcc aggtgcatca agctgccaaa ccccagccct 5281 ccgtcagctt tgaagcccgc ctcccagcga tcagcgcagg gatcgccgtt cttccagtcg 5341 tcgctgtact cctcgtcttt ctgcgaccac tgccgccaga tgtttaagcc gtcttcatcc 5401 ggcatctcgg agtgcagcat cgcgccgatc cgccaccaga agtcatcaga cccacgtccc 5461 tgcggtggaa tgacagacaa gcagttttca gcgatggcaa ttttctcctc cctggaacgg 5521 cagctgtaac gcaggtcttt cctttgcgct ccgcttgttc cctcctgccg cttcttaaac 5581 gactcctcca tctccaccag aagccactca ggagcctctg gaatggcgtt cacatcgcct 5641 gaaagcttgt actccccgcc ttggtagtaa gcacccccta caaggccctg acggcgtatg 5701 ccccacagaa cctcccaacc ctgtttgctg gcagccaagc tgatcccagc aacctggccc 5761 catttctcct taggcacccg aaacaggtat ttagcggcat tctttttcgg agaaaccaca 5821 acaggagcct ccttgagggt ggctccccac ttccttttca acgacgcaag gttggcgtca 5881 acatcaagga tcaccagacc gtcgctgcgt ggacctgtaa acacgccgat cgccttgtac 5941 gtgtctgggt gctgttcgat gtagcgagcg gaagcgtgag ggctgaggtt ctctctgtgc 6001 gctcttccca gcggtgactt accgcaagcc acaccacctt tgtcgccggg cagcctgaag 6061 ccctgggcat agatcggtgc agtggcccag tttttgggaa gagtccttgt gaaatcagcg 6121 agattcattt gctacagtag tgccgttgaa ctttttacag acacccctgg aggcttctgc 6181 ggccccaggg gttttttcat tctacagcag ttgacagccc ccgccattgt gctacgttta 6241 tgaggcaccg ggcaacgtgc ccaccgcaat tttcaaatgc cttttctttc tcaaaaagcc 6301 gtctcagcag tagccggagg cactggtggt ggttatctaa acccctccaa gatccaatcc 6361 ggcagcaatg tgcgctttgc attgttgagc gaccagcctc ttgagtttta tgagtgctgg 6421 ggcgaagcca gcgacggttc gctcaagcct tttcgttttt ctgaggatcc aaaatccgac 6481 gacatcgagg ccgaaatggg tcctgattac acacggcgtc agaaccgtga tggcactgca 6541 cccgagccag caaagttcgc tcttgctgtt cctgtataca acttcgatac agagggcgtg 6601 cagattatgc agctcaccca aaaaagcatc atccgcgagt tggacggcat ttctcaaatg 6661 gaggactacg ccaatctgct ggagcatgat tttgttctcg gcaaagaggg caacggcctt 6721 aacaccgagt acagccttcg ccctgttccc cgtaagaagg gatcggataa ggcgattgac 6781 agtgcctgga ctgaagccaa gggcgctgga tttgagattg gtcgcttgtt gactggcgaa 6841 aacccattca aagccgactg atgttgtgcg gcaggactag aaaagtcatt aacttcgaat 6901 tcttgcctgc ccgcaatttg cgctgcaact gctcgggccg tgcggttgtg tacgagggtg 6961 caaattgcaa aagctcaggg ttctcaccgc agagtgctag tggttcctag gtactattca 7021 tggctggtac taaggcagga gcgtccgtaa gtccgcattc aatacaaggg ggctttctag 7081 ccccttttgt agtaagtaag cttgtaaaaa ctcagtgata gatgccagtc gatacccagg 7141 acgcgttagc cggtttacgg cgctggaact tggtacgtga tgactcgggc tcccaccgcg 7201 tttataggga cgaaaaaggc aacacatatg cgtcagtgac gcacattctc aaggaaacct 7261 caccgcaatg gcaaaaagat gccctggacc gttggcttga aagacctact gctcccgctg 7321 agcgtgacat tgcctgccag cgcgggactc ttgctcacga tcacgcggaa tatgtcctca 7381 aaacggcagc caagctggcg cgtaacagcg ctaacaagcg aggaagctgg aggactggag 7441 atgacggcct ggaacg //