LOCUS AP013906 6585 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S40-C248, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013906
VERSION AP013906.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 6585)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6585
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1C-MedDCM-OCT-S40-C248"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(1799..2056)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22922.1"
/transl_table=11
/translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKIR
TAAGWEEDEDGWYAPHPENPGEMISEWDWMDFGLSYPEDVK"
CDS complement(2090..2353)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22923.1"
/transl_table=11
/translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ
DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ"
CDS complement(2415..2660)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22924.1"
/transl_table=11
/translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS
PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN"
CDS complement(2828..5257)
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22925.1"
/transl_table=11
/translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH
RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP
VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY
KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS
VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE
AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM
KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS
KVEKRDFLIPDVMATPAVVVIYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG
GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKRKPKLVIID
SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD
AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT
AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVGRG
LITTHEAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDDAVFAMGQA
MGQQPKSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID
QLMREAGSKWD"
CDS 5406..5990
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22926.1"
/transl_table=11
/translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF
YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN
FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK
KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD"
BASE COUNT 1495 a 1871 c 1544 g 1675 t
ORIGIN
1 ttgccgaaag acacctcagc caaagcaggg atctcgccca gccatttggc ctctgcctct
61 tccatcacct gttttaaggt ggctgcccac tcttcagctg catcctccct aacaagcaac
121 aaaatttcgt catgcaccgc agccgcgatg cggaccgttt cttcccccgc ctctctaaca
181 agcggccaca gcttgcccaa agcctgcttg agaatcgccg caccagcgcc ctgaacaggt
241 gtattacagc gaacagttag gcggttagcg tcaccaggca gatctctcct cataccagtt
301 tcaggtattt ctataaactg aataccgcac ttcttgccct taaatctagg gttagggtta
361 ttagctttgt cgttctcttt cttgtgccat ttagctatac cttcaaactc ttgaaaccag
421 tcggacctaa ctttctgcgc ttcttccaac gtcatgctta cgttgctgcc cgcagcataa
481 ttacgaagac ccttagctcc ggacccatac agaagaccaa aattggcaga cttggcaatc
541 tggcgcgtac acccaatagc ttcagctgtc actgtgtgca agtcttcccc gtctttgaat
601 gcctggatca ttttcttgtc ctgcgccaca gccgccgcta aacgcagctc catctggcca
661 aagtcagcgt caacaattag ccagcccttc ggagcttcta cgcaaccacg aaactgtttg
721 tccttaggta tctgctgatt gttcgggttg aagcacgtca tacgtcctgt ttcagcgcct
781 aactgcatgt aactggcttt tacaaaccca tccgggcgca tcttctcctg gatcgaagta
841 atcatttgcc gtcttttttc agctttcttc cagttcaaat acatctgaac aacagggtga
901 tgtccagcaa actcgctaag cgcattttta gacacactct caagctttac ccccagaaca
961 gcagataact tacttttcag ttgctgagga ctatttaaat taaagccctt aagcttttta
1021 gttcctgctc tgacgctacc ctcgtccttg gcacgtaaat taaaagagtc gtcctcatct
1081 ctaggcagct tttggccttc aggtaaagcc gaatcaagct ccctgataaa ctctttcgac
1141 agctccttta tatcgtgttc gtaatctaac tttctctgtg cgagattttc tttgttccat
1201 ggcaggcccg tcctccacat ttgagccata gcaggcaacg ccttacactc caatgtgaag
1261 gcttccatta aactgtattg acaaagctcg tccttcaaga ttcggtctaa ctcgcacaaa
1321 acctccacat cttttgcagc gtaaattaac tgctcttgag ttaaaactcc cgaccagttt
1381 gacttttgct gctccttatc taagttaatt tttaaatact cttttacaac atctgcgaga
1441 ccgtgcttcc tgccagtttt tccgttagat aacaagcggc tggcaagcat ggagcagccg
1501 agaaaccgcg tatttgggtg gattccatat tcttgcaacc acgcaatatc aaacacagcg
1561 ttatgggcaa gccagtggcg ctctccattg ctgaagaagc gccgcaaacg atcccagtcg
1621 ctttcatctg tttgaaaaaa gtcgatgaca acaataatct tccgggtttc gcagccaagc
1681 tgaagcagcc gcagctttcc catctctggc tgaagctggc acgtctccgt gtcaaagcag
1741 acgcttatag ccgtgtctag cttggagagg tgctccatgc caaaaagaac ttcgtaactc
1801 acttcacgtc ctccgggtag gagagaccaa agtccatcca atcccactca gagatcatct
1861 cgccagggtt ttcaggatgt ggagcgtacc agccgtcttc atcttcttcc caaccggcgg
1921 ctgtacggat tttgtagatg cgatcgtgtt ccgccattgc ggcttcgatc tcgtccaggt
1981 ggtcgtacca cgtagggcac gtccccatca tgcggagatt ttcttgtgct ctatagagag
2041 ctgtggagtc agacatgggt agtgtcgtga actccgttag agtagcacac tactgagtga
2101 ccatgctctc cacaatagga aaataatcta agtcgtagaa agtcatcaca gccacgtcaa
2161 cgccgcattc gagagctgcg gtaacctgcg tttcaaaatc tctaaacccc ctcatcgagt
2221 cctggtaagt gacctgctca acagccagca cgcgcgagcg gtcgtcgtag ctagtaaacc
2281 gcactaaagc taagacgtca gagtcagtca actcctgcac cttgcagtag ataaatttga
2341 catctgtgtt catgcaggca aaccccctat ctggagtatg ggtactcata ccaaaaaaca
2401 agccacggag ccgtttaatt aaccacttca tttacaacac acatgacgat gtgctcgacc
2461 ttgcggtggt ctacgccgtg acctgctcta cgacgaactt tttgaacaag ctcatggatg
2521 tctttcggac tgactagccg ctcttcagca gaaaaaaccc gttgtctgat caacctggaa
2581 cgggaaacgc caagtaagtc tgcttctttt ttcaagcgtt ccaggtcggc ttctgggaaa
2641 gcaactttta cttctcgcat ggtcgaaagt ctttactcca atacagtagc acattaacgc
2701 tgcttggctt ttttgcgaag ctcacggatg tagtcccgtt cagcaaaaag ctctttccag
2761 tcgtggggag gttctggcat ccattcctgg agcttggcct cccatttctg aaaccgctgt
2821 ttatcggtca gtcccactta gaccccgctt cacgcatcaa ttgatcaatc tccgcgaaag
2881 atcgcctcgc gcggggatat tgatctgact gtcccattgg ggcagatccc ttagtatcag
2941 acgctttagc aatgggacac ccagcctctt tttcagaaac tgtcccattg ctctcgggtg
3001 aatgggacac ctcctccgat tttggctgtt gtcccattgc ttgtcccatt gcaaaaaccg
3061 cgtcatcaca gggtttttcc cccaatggga cactgtcttc aacctctccg cgcacgcgcg
3121 tgtgtggggg ttgttcaaca acagctgtgt aaagcagtgg agctttaccg cctttttgcc
3181 ctggaacagc agcctcgtgg gtcgttatca agccccgacc aacccagcgt tgaagcgctt
3241 tacggattgc tgtgacattg cccccaacaa tcgggtccgc gttcagctct gttcggctga
3301 tggagcgtgg gtagatcgct ctaacgcgcg acagaacgcg atcagtaatt ccgctgggcg
3361 acgtgtcggt gctgtcgatc tctgcggtga aatccgcgat tgagaaagtc aggtcagact
3421 cctggcgcat aatcagcgcc gtgccgctcc taccactacg gctcttctca acatgaatga
3481 tccggctgtg ccgtggagcg atgccctgct cgatctgctt gtccgtgggc tcagcaagcc
3541 tccaggtctc tgtaacggcg tcacggatcg ctgaggtgcc tctgaagccg ccttgcttgt
3601 tggcgtggtg aatgatcagg atggtggtcc gtgggaacag agtgccgttg tttctggtca
3661 gccaatacag cggcgtagcg aagtcggatt tgttctcgtc aaacgcccga ccaccagagc
3721 agccaatcag ggagtcgatg atcacgagtt tcggtttccg ctttttcaac aaattttgaa
3781 actgagcgta atttcccaaa ttccagttgg gctcaatatg cacatctttt gtgcgcggaa
3841 actcaacctc atccagctga tcatccaaat cagccaacgg ctggtcgccg ttaagaatta
3901 cgcagccacc tttcgccact ggagcgtgct tgccccgaac aacaaaaggt gatccggtta
3961 caacgtgctt agccagcgtc caagcagcag tggatttgcc tttaccacct tccgcataaa
4021 tcacgactac tgcgggtgtc gccataacgt caggaattaa gaagtcgcgt ttttcaacct
4081 tcgatttaag ttcatccaag gtgaacccac ctgtgtcttc tatgtatcca atgtgatcaa
4141 cgtaaacacc ttcaagtttt gactggtcct tgtaacccgc ctcgttttta atacgattta
4201 tctcataatt acgtctgcct ggattttcaa tatccatggc ttccttcatc tgcttcatcg
4261 cctcgtcata cgagagggtc tcctgcctgt aacggatcgg cgctgtttcg atctctgcca
4321 ccaccgatgc aagattgttc ccttgaaatc gggccttctc tgggtcgtag tgattagcca
4381 ggtgcatcaa gctgccaaac cccagccctc cgtcagcttt gaagcccgcc tcccagcgat
4441 cagcgcaggg atcgccgttc ttccagtcgt cgctgtactc ctcgtctttc tgcgaccact
4501 gccgccagat gtttaagccg tcttcatccg gcatctcgga gtgcagcatc gcgccgatcc
4561 gccaccagaa gtcatcagac ccacgtccct gcggtggaat gacagacaag cagttttcag
4621 cgatggcaat tttctcctcc ctggaacggc agctgtaacg caggtctttc ctttgcgctc
4681 cgcttgttcc ctcctgccgc ttcttaaacg actcctccat ctccaccaga agccactcag
4741 gagcctctgg aatggcgttc acatcgcctg aaagcttgta ctccccgcct tggtagtaag
4801 caccccctac aaggccctga cggcgtatgc cccacagaac ctcccaaccc tgtttgctgg
4861 cagccaagct gatcccagca acctggcccc atttctcctt aggcacccga aacaggtatt
4921 tagcggcatt ctttttcgga gaaaccacaa caggagcctc cttgagggtg gctccccact
4981 tccttttcaa cgacgcaagg ttggcgtcaa catcaaggat caccagaccg tcgctgcgtg
5041 gacctgtaaa cacgccgatc gccttgtacg tgtctgggtg ctgttcgatg tagcgagcgg
5101 aagcgtgagg gctgaggttc tctctgtgcg ctcttcccag cggtgactta ccgcaagcca
5161 caccaccttt gtcgccgggc agcctgaagc cctgggcata gatcggtgca gtggcccagt
5221 ttttgggaag agtccttgtg aaatcagcga gattcatttg ctacagtagt gccgttgaac
5281 tttttacaga cacccctgga ggcttctgcg gccccagggg ttttttcatt ctacagcagt
5341 tgacagcccc cgccattgtg ctacgtttat gaggcaccgg gcaacgtgcc caccgcaatt
5401 ttcaaatgcc ttttctttct caaaaagccg tctcagcagt agccggaggc actggtggtg
5461 gttatctaaa cccctccaag atccaatccg gcagcaatgt gcgctttgca ttgttgagcg
5521 accagcctct tgagttttat gagtgctggg gcgaagccag cgacggttcg ctcaagcctt
5581 ttcgtttttc tgaggatcca aaatccgacg acatcgaggc cgaaatgggt cctgattaca
5641 cacggcgtca gaaccgtgat ggcactgcac ccgagccagc aaagttcgct cttgctgttc
5701 ctgtatacaa cttcgataca gagggcgtgc agattatgca gctcacccaa aaaagcatca
5761 tccgcgagtt ggacggcatt tctcaaatgg aggactacgc caatctgctg gagcatgatt
5821 ttgttctcgg caaagagggc aacggcctta acaccgagta cagccttcgc cctgttcccc
5881 gtaagaaggg atcggataag gcgattgaca gtgcctggac tgaagccaag ggcgctggat
5941 ttgagattgg tcgcttgttg actggcgaaa acccattcaa agccgactga tgttgtgcgg
6001 caggactaga aaagtcatta acttcgaatt cttgcctgcc cgcaatttgc gctgcaactg
6061 ctcgggccgt gcggttgtgt acgagggtgc aaattgcaaa agctcagggt tctcaccgca
6121 gagtgctagt ggttcctagg tactattcat ggctggtact aaggcaggag cgtccgtaag
6181 tccgcattca atacaagggg gctttctagc cccttttgta gtaagtaagc ttgtaaaaac
6241 tcagtgatag atgccagtcg atacccagga cgcgttagcc ggtttacggc gctggaacct
6301 ggtacgtgat gactcgggct cccaccgcgt ttatagggac gaaaaaggca acacatatgc
6361 gtcagtgacg cacattctca aggaaacctc accgcaatgg caaaaagatg ccctggaccg
6421 ttggcttgaa agacctactg ctcccgctga gcgtgacatt gcctgccagc gcgggactct
6481 tgctcacgat cacgcggaat atgtcctcaa aacggcagcc aagctggcgc gtaacagcgc
6541 taacaagcga ggaagctgga ggactggaga tgacggcctg gaacg
//