LOCUS AP013902 7445 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S31-C173, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013902
VERSION AP013902.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 7445)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7445
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1C-MedDCM-OCT-S31-C173"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(596..1180)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22875.1"
/transl_table=11
/translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF
YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN
FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK
KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD"
CDS 1329..3758
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22876.1"
/transl_table=11
/translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH
RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP
VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY
KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS
VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE
AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM
KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS
KVEKRDFLIPDVLATPAVVVLYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG
GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKREPKIVIID
SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD
AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT
AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVSRG
LITTHGAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDGAVFAMGQA
MGQQPKSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID
QLMREAGSKWD"
CDS 3926..4171
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22877.1"
/transl_table=11
/translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS
PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN"
CDS 4233..4496
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22878.1"
/transl_table=11
/translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ
DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ"
CDS 4530..4787
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22879.1"
/transl_table=11
/translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKTR
TAAGWEEDEDGWCAPHPENPGEMISEWDWMDFGLSYPEDVK"
CDS 4784..6607
/codon_start=1
/product="DNA polymerase"
/protein_id="BAR22880.1"
/transl_table=11
/translation="MSYEVLFGMEHLSKLDTAISVCFDTETCQLQPEMGKLRLLQLGC
ETRKIIVVIDLFQTDESDWDRLRRFFSNGERHWLAHNAVFDIAWLQEYGIHPNTRFLG
CSMLASRLLSNGKTGRKHGLADVVKEYLKINLDKEQQKSNWSGVLTQEQLIYAAKDVE
VLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLDYEHDI
KELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQQLK
SKLSAVLGVKLESVSKNALSEFAGHHPVVQMYLNWKKAEKRRQMITSIQEKMRPDGFV
KASYMQLGAETGRMTCFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAV
AQDKKMIQAFKDGEDLHTVTAEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM
TLEEAQKVRSDWFQEFEGIAKWHKKENDKANNPNPRFKGKKCGIQFIEIPETGMRRDL
PGDANRLTVRCNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVRE
DAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQETH"
CDS 6607..6765
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22881.1"
/transl_table=11
/translation="MISIYRTDRGWHSNFGGTVTYHQDFGEAMDAAYRQATRDGALKQ
SDPDSNNG"
CDS 6923..7174
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22882.1"
/transl_table=11
/translation="MPQLHGNKAHLHILIDPNRAELVFEKAAEADQRPAAWIREAVYS
ELKRVYPTSVYNEAMAKDQVQWRSSIRNRVEGRANQKDI"
BASE COUNT 1903 a 1759 c 2091 g 1692 t
ORIGIN
1 cgttccaggc cgtcatctcc agtcctccag cttcctcgct tgttagcgct gttacgcgcc
61 agcttggctg ccgttttgag gacatattcc gcgtgatcgt gagcaagagt cccgcgctgg
121 caggcaatgt cacgctcagc gggagcagta ggtctttcaa gccaacggtc cagggcatct
181 ttttgccatt gcggtgaggt ttccttgaga atgtgcgtca ctgacgcata tgtgttgcct
241 ttttcgtccc tataaacgcg gtgggagccc gagtcatcac gtaccaagtt ccagcgccgt
301 aaaccggcta acgcgtcctg ggtatcgact ggcatctatc actgagtttt tacaagctta
361 cttactacaa aaggggctag aaagccccct tgtattgaat gcggacttac ggacgctcct
421 gccttagtac cagccatgaa tagtacctag gaaccactag cactctgcgg tgagaaccct
481 gagcttttgc aatttgcacc ctcgtacaca accgcacggc ccgagcagtt gcagcgcaaa
541 ttgcgggcag gcaagaattc gaagttaatg acttttctag tcctgccgca caacatcagt
601 cggctttgaa tgggttttcg ccagtcaaca agcgaccaat ctcaaatcca gcgcccttgg
661 cttcagtcca ggcactgtca atcgccttat ccgatccctt cttacgggga acagggcgaa
721 ggctgtactc ggtgttaagg ccgttgccct ctttgccgag aacaaaatca tgctccagca
781 gattggcgta gtcctccatt tgagaaatgc cgtccaactc gcggatgatg cttttttggg
841 tgagctgcat aatctgcacg ccctctgtat cgaagttgta tacaggaaca gcaagagcga
901 actttgctgg ctcgggtgca gtgccatcac ggttctgacg ccgtgtgtaa tcaggaccca
961 tttcggcctc gatgtcgtcg gattttggat cctcagaaaa acgaaaaggc ttgagcgaac
1021 cgtcgctggc ttcgccccag cactcataaa actcaagagg ctggtcgctc aacaatgcaa
1081 agcgcacatt gctgccggat tggatcttgg aggggtttag ataaccacca ccagtgcctc
1141 cggctactgc tgagacggct ttttgagaaa gaaaaggcat ttgaaaattg cggtgggcac
1201 gttgcccggt gcctcataaa cgtagcacaa tggcgggggc tgtcaactgc tgtagaatga
1261 aaaaacccct ggggccgcag aagcctccag gggtgtctgt aaaaagttca acggcactac
1321 tgtagcaaat gaatctcgct gatttcacaa ggactcttcc caaaaactgg gccactgcac
1381 cgatctatgc ccagggcttc aggctgcccg gcgacaaagg tggtgtggct tgcggtaagt
1441 caccgctggg aagagcgcac agagagaacc tcagccctca cgcttccgct cgctacatcg
1501 aacagcaccc agacacgtac aaggcgatcg gcgtgtttac aggtccacgc agcgacggtc
1561 tggtgatcct tgatgttgac gccaaccttg cgtcgttgaa aaggaagtgg ggagccaccc
1621 tcaaagaggc tcctgttgtg gtttctccga aaaagaatgc cgctaaatac ctgtttcggg
1681 tgcctaagga gaaatggggc caggttgctg ggatcagctt ggctgccagc aaacagggtt
1741 gggaggttct gtggggcata cgccgtcagg gccttgtagg gggtgcttac taccaaggcg
1801 gggagtacaa gctttcaggc gatgtgaacg ccattccaga ggctcctgag tggcttctgg
1861 tggagatgga ggagtcgttt aagaagcggc aggagggaac aagcggagcg caaaggaaag
1921 acctgcgtta cagctgccgt tccagggagg agaaaattgc cattgctgaa aactgcttgt
1981 ctgtcattcc accgcaggga cgtgggtctg atgacttctg gtggcggatc ggcgcgatgc
2041 tgcactccga gatgccggat gaagacggct taaacatctg gcggcagtgg tcgcagaaag
2101 acgaggagta cagcgacgac tggaagaacg gcgatccctg cgctgatcgc tgggaggcgg
2161 gcttcaaagc tgacggaggg ctggggtttg gcagcttgat gcacctggct aatcactacg
2221 acccagagaa ggctcgattt caagggaaca atcttgcatc ggtggtggca gagatcgaaa
2281 cagcgccgat ccgttacagg caggagaccc tctcgtatga cgaggcgatg aagcagatga
2341 aggaagccat ggatattgaa aatccaggca gacgtaatta tgagataaat cgtattaaaa
2401 acgaggcggg ttacaaggac cagtcaaaac ttgaaggtgt ttacgttgat cacattggat
2461 acatagaaga cacaggtggg ttcaccttgg atgaacttaa atcgaaggtt gaaaaacgcg
2521 acttcttaat tcctgacgtt ctggcaacac ccgcagtagt cgtactttat gcggaaggtg
2581 gtaagggcaa atccactgct gcttggacgc tggctaagca cgttgtcacc ggatcacctt
2641 ttgttgttcg gggcaagcat gctccagtgg cgaaaggtgg ttgcgtaatt cttaacggcg
2701 accagccgtt ggctgatttg gatgatcagc tggatgaggt tgagtttccg cgcacaaaag
2761 atgtgcatat tgagcccaac tggaatttgg gaaattacgc ccagtttcaa aatttgttga
2821 aaaagcggga accgaaaatc gtgatcatcg actccctgat tggctgctct ggtggtcggg
2881 cgtttgacga gaacaaatcc gacttcgcta cgccgctgta ttggctgacc agaaacaacg
2941 gcactctgtt cccacggacc accatcctga tcattcacca cgccaacaag caaggcggct
3001 tcagaggcac ctcagcgatc cgtgacgccg ttacagagac ctggaggctt gctgagccca
3061 cggacaagca gatcgagcag ggcatcgctc cacggcacag ccggatcatt catgttgaga
3121 agagccgtag tggtaggagc ggcacggcgc tgattatgcg ccaggagtct gacctgactt
3181 tctcaatcgc ggatttcacc gcagagatcg acagcaccga cacgtcgcct agcggaatta
3241 ctgatcgcgt tctgtcgcgc gttagagcga tctacccacg ctccatcagc cgaacagagc
3301 tgaacgcgga cccgattgtt gggggcaatg tcacagcaat ccgtaaagcg cttcaacgct
3361 gggttagtcg gggcttgata acgacccacg gggctgctgt tccagggcag aaaggcggta
3421 aagctccact gctttacaca gctgttgttg aacaaccccc acacacgcgc gtgcgcggag
3481 aggttgaaga tagtgtccca ttgggggaaa aaccttgtga cggcgcggtt tttgcaatgg
3541 gacaagcaat gggacaacag ccaaaatcgg aggaggtgtc ccattcaccc gagagcaatg
3601 ggacagtttc tgaaaaagag gctgggtgtc ccattgctaa agcgtctgat accaagggat
3661 ctgccccaat gggacagtca gatcaatatc cccgcgcgag gcgatctttc gcggagattg
3721 atcagttgat gcgtgaagcg gggtctaagt gggactgacc gataaacagc ggtttcagaa
3781 atgggaggcc aagctccagg aatggatgcc agaacctccc cacgactgga aagagctttt
3841 tgctgaacgg gactacatcc gtgagcttca caaaaaagcc aagcagcgtt aatgtgctac
3901 tgtattggag taaaaacttt cgaccatgcg agaagtaaaa gttgctttcc cggaagccga
3961 cctggaacgc ttgaaaaaag aagcagactt acttggcgtt tcccgttcca ggttgatcag
4021 acaacgggtt ttttctgctg aagagcggct agtcagtccg aaagacatcc atgagcttgt
4081 tcaaaaagtt cgtcgtagag caggtcacgg cgtagaccac cgcaaggtcg agcacatcgt
4141 catgtgtgtt gtaaatgaag tggttaatta aacggcttcg tggcttgttt tttggtatga
4201 gtacccatac tccagatagg gggtttgcct gcatgaacac agatgtcaaa tttatctact
4261 gcaaggtgca ggagctgact gactctgacg tcttagcttt agtgcggttt actagctacg
4321 acgaccgctc gcgcgtgctg gctgttgagc aggtcactta ccaggactcg atgagggggt
4381 ttagagattt tgaaacgcag gttaccgcag ctctcgaatg cggcgttgac gtggctgtga
4441 tgactttcta cgacttagat tattttccta ttgtggagag catggtcact cagtagtgtg
4501 ctactctaac ggagttcacg acactaccca tgtctgactc cacagctctc tatagagcac
4561 aagaaaatct ccgcatgatg gggacgtgcc ctacgtggta cgaccacctg gacgagatcg
4621 aagcagcaat ggcggaacac gatcgcatct acaaaacccg tacagccgcc ggttgggaag
4681 aagatgaaga cggctggtgc gctccacatc ctgaaaaccc tggcgagatg atctctgagt
4741 gggattggat ggactttggt ctctcctacc cggaggacgt gaagtgagtt acgaagttct
4801 ttttggcatg gagcacctct ccaagctaga cacggctata agcgtctgct ttgacacgga
4861 gacgtgccag cttcagccag agatgggaaa gctgcggctg cttcagcttg gctgcgaaac
4921 ccggaagatt attgttgtca tcgacctttt tcaaacagat gaaagcgact gggatcgttt
4981 gcggcgcttc ttcagcaatg gagagcgcca ctggcttgcc cataacgctg tgtttgatat
5041 tgcgtggttg caagaatatg gaatccaccc aaatacgcgg tttctcggct gctccatgct
5101 tgccagccgc ttgttatcta acggaaaaac tggcaggaag cacggtctcg cagatgttgt
5161 aaaagagtat ttaaaaatta acttagataa ggagcagcaa aagtcaaact ggtcgggagt
5221 tttaactcaa gagcagttaa tttacgctgc aaaagatgtg gaggttttgt gcgagttaga
5281 ccgaatcttg aaggacgagc tttgtcaata cagtttaatg gaagccttca cattggagtg
5341 taaggcgttg cctgctatgg ctcaaatgtg gaggacgggc ctgccatgga acaaagaaaa
5401 tctcgcacag agaaagttag attacgaaca cgatataaag gagctgtcga aagagtttat
5461 cagggagctt gattcggctt tacctgaagg ccaaaagctg cctagagatg aggacgactc
5521 ttttaattta cgtgccaagg acgagggtag cgtcagagca ggaactaaaa agcttaaggg
5581 ctttaattta aatagtcctc agcaactgaa aagtaagtta tctgctgttc tgggggtaaa
5641 gcttgagagt gtgtctaaaa atgcgcttag cgagtttgct ggacatcacc ctgttgttca
5701 gatgtatttg aactggaaga aagctgaaaa aagacggcaa atgattactt cgatccagga
5761 gaagatgcgc ccggatgggt ttgtaaaagc cagttacatg cagttaggcg ctgaaacagg
5821 acgtatgacg tgcttcaacc cgaacaatca gcagatacct aaggacaaac agtttcgtgg
5881 ttgcgtagaa gctccgaagg gctggctaat tgttgacgct gactttggcc agatggagct
5941 gcgtttagcg gcggctgtgg cgcaggacaa gaaaatgatc caggcattca aagacgggga
6001 agacttgcac acagtgacag ctgaagctat tgggtgtacg cgccagattg ccaagtctgc
6061 caattttggt cttctgtatg ggtccggagc taagggtctt cgtaattatg ctgcgggcag
6121 caacgtaagc atgacgttgg aagaagcgca gaaagttagg tccgactggt ttcaagagtt
6181 tgaaggtata gctaaatggc acaagaaaga gaacgacaaa gctaataacc ctaaccctag
6241 atttaagggc aagaagtgcg gtattcagtt tatagaaata cctgaaactg gtatgaggag
6301 agatctgcct ggtgacgcta accgcctaac tgttcgctgt aatacgcctg ttcagggcgc
6361 tggtgcggcg attctcaagc aggctttggg caagctgtgg ccgcttgtta gagaggcggg
6421 ggaagaaacg gtccgcatcg cggctgcggt gcatgacgaa attttgttgc ttgttaggga
6481 ggatgcagct gaagagtggg cagccacctt aaaacaggtg atggaagagg cagaggccaa
6541 atggctgggc gagatccctg ctttggctga ggtgtctttc ggcaaaacct ggcaggagac
6601 tcactgatga tcagcatcta ccgcactgat cgaggctggc actcaaactt tggagggacg
6661 gtaacgtacc accaagactt tggggaagcg atggatgccg cgtacaggca ggcaactcgt
6721 gatggagcgc ttaaacaaag cgatccagac agcaacaacg ggtgatctgc agcgggccgc
6781 gatgttttta gaaggggcgc gtgaggtaag agcgggctgt accaaccaac gcgctcaagc
6841 tcgccgcgcc caaagcactg cttggaaaaa taaagtcgat gactctatta cgtggtaaca
6901 ttgttgtagc aatttgaggc acatgccgca gcttcacggc aacaaagcgc atctacacat
6961 ccttattgac cccaacagag cggagcttgt cttcgaaaaa gcggctgagg cagaccagcg
7021 cccagcggct tggataagag aagctgtgta ttccgagcta aagcgggttt atccgactag
7081 cgtttacaac gaggctatgg ccaaagatca agtgcaatgg cgctcgtcca ttcgcaacag
7141 agtcgaaggc cgagctaacc agaaagacat ctaacttttt atgcgctttg cactcaaagt
7201 ggccgattcc gagtccatgt ttttatcggc ctattatgaa aactctggcg acactttttg
7261 gactataacc gcctcagatg cctgcagtta caacagtttt aaccaagctc aaactattct
7321 gagtaagata cgccgaccat tagaaattgt atcagtagct ttttaattac tgctggctgt
7381 cggtgtcccg caagacgcac ttttctgcat ggtacgcacc atcctgctgc atgtgtatta
7441 cgtcg
//