LOCUS AP013901 7920 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S29-C167, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013901
VERSION AP013901.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 7920)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7920
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1C-MedDCM-OCT-S29-C167"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(313..564)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22867.1"
/transl_table=11
/translation="MPQLHGNKAHLHILIDPNRAELVFEKAAEADQRPAAWIREAVYS
ELKRVYPTSVYNEAMAKDQVQWRSSIRNRVEGRANQKDI"
CDS complement(722..880)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22868.1"
/transl_table=11
/translation="MISIYRTDRGWHSNFGGTVTYHQDFGEAMDAAYRQATRDGALKQ
SDPDSNNG"
CDS complement(880..2703)
/codon_start=1
/product="DNA polymerase"
/protein_id="BAR22869.1"
/transl_table=11
/translation="MSYEVLFGMEHLSKLDTAISVCFDTETCQLQPEMGKLRLLQLGC
ETRKIIVVIDFFQTDESDWDRLRRFFSNGERHWLAHNAVFDIAWLQEYGIHPNTRFLG
CSMLASRLLSNGKTGRKHGLADVVKEYLKINLDKEQQKSNWSGVLTQEQLIYAAKDVE
VLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLDYEHDI
KELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQQLK
SKLSAVLGVKLESVSKNALSEFAGHHPVVQMYLNWKKAEKRRQMITSIQEKMRPDGFV
KASYMQLGAETGRMTCFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAV
AQDKKMIQAFKDGEDLHTVTAEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM
TLEEAQKVRSDWFQEFEGIAKWHKKENDKANNPNPRFKGKKCGIQFIEIPETGMRRDL
PGDANRLTVRCNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVRE
DAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQETH"
CDS complement(2700..2957)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22870.1"
/transl_table=11
/translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKIR
TAAGWEEDEDGWCAPHPENPGEMISEWDWMDFGLSYPEDVK"
CDS complement(2991..3254)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22871.1"
/transl_table=11
/translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ
DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ"
CDS complement(3316..3561)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22872.1"
/transl_table=11
/translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS
PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN"
CDS complement(3729..6158)
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22873.1"
/transl_table=11
/translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH
RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP
VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY
KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS
VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE
AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM
KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS
KVEKRDFLIPDVLATPAVVVLYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG
GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKREPKIVIID
SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD
AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT
AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVSRG
LITTHGAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDGAVFAMGQA
MGQQPKSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID
QLMREAGSKWD"
CDS 6307..6891
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22874.1"
/transl_table=11
/translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF
YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN
FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK
KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD"
BASE COUNT 1796 a 2215 c 1905 g 2004 t
ORIGIN
1 cactgtttcc ctgtcagtga ctggatgatc ccatggatgc acgacgtaat acacatgcag
61 caggatggtg cgtaccatgc agaaaagtgc gtcttgcggg acaccgacag ccagcagtaa
121 ttaaaaagct actgatacaa tttctaatgg tcggcgtatc ttactcagaa tagtttgagc
181 ttggttaaaa ctgttgtaac tgcaggcatc tgaggcggtt atagtccaaa aagtgtcgcc
241 agagttttca taataggccg ataaaaacat ggactcggaa tcggccactt tgagtgcaaa
301 gcgcataaaa agttagatgt ctttctggtt agctcggcct tcgactctgt tgcgaatgga
361 cgagcgccat tgcacttgat ctttggccat agcctcgttg taaacgctag tcggataaac
421 ccgctttagc tcggaataca cagcttctct tatccaagcc gctgggcgct ggtctgcctc
481 agccgctttt tcgaagacaa gctccgctct gttggggtca ataaggatgt gtagatgcgc
541 tttgttgccg tgaagctgcg gcatgtgcct caaattgcta caacaatgtt accacgtaat
601 agagtcatcg actttatttt tccaagcagt gctttgggcg cggcgagctt gagcgcgttg
661 gttggtacag cccgctctta cctcacgcgc cccttctaaa aacatcgcgg cccgctgcag
721 atcacccgtt gttgctgtct ggatcgcttt gtttaagcgc tccatcacga gttgcctgcc
781 tgtacgcggc atccatcgct tccccaaagt cttggtggta cgttaccgtc cctccaaagt
841 ttgagtgcca gcctcgatca gtgcggtaga tgctgatcat cagtgagtct cctgccaggt
901 tttgccgaaa gacacctcag ccaaagcagg gatctcgccc agccatttgg cctctgcctc
961 ttccatcacc tgttttaagg tggctgccca ctcttcagct gcatcctccc taacaagcaa
1021 caaaatttcg tcatgcaccg cagccgcgat gcggaccgtt tcttcccccg cctctctaac
1081 aagcggccac agcttgccca aagcctgctt gagaatcgcc gcaccagcgc cctgaacagg
1141 cgtattacag cgaacagtta ggcggttagc gtcaccaggc agatctctcc tcataccagt
1201 ttcaggtatt tctataaact gaataccgca cttcttgccc ttaaatctag ggttagggtt
1261 attagctttg tcgttctctt tcttgtgcca tttagctata ccttcaaact cttgaaacca
1321 gtcggaccta actttctgcg cttcttccaa cgtcatgctt acgttgctgc ccgcagcata
1381 attacgaaga cccttagctc cggacccata cagaagacca aaattggcag acttggcaat
1441 ctggcgcgta cacccaatag cttcagctgt cactgtgtgc aagtcttccc cgtctttgaa
1501 tgcctggatc attttcttgt cctgcgccac agccgccgct aaacgcagct ccatctggcc
1561 aaagtcagcg tcaacaatta gccagccctt cggagcttct acgcaaccac gaaactgttt
1621 gtccttaggt atctgctgat tgttcgggtt gaagcacgtc atacgtcctg tttcagcgcc
1681 taactgcatg taactggctt ttacaaaccc atccgggcgc atcttctcct ggatcgaagt
1741 aatcatttgc cgtctttttt cagctttctt ccagttcaaa tacatctgaa caacagggtg
1801 atgtccagca aactcgctaa gcgcattttt agacacactc tcaagcttta cccccagaac
1861 agcagataac ttacttttca gttgctgagg actatttaaa ttaaagccct taagcttttt
1921 agttcctgct ctgacgctac cctcgtcctt ggcacgtaaa ttaaaagagt cgtcctcatc
1981 tctaggcagc ttttggcctt caggtaaagc cgaatcaagc tccctgataa actctttcga
2041 cagctccttt atatcgtgtt cgtaatctaa ctttctctgt gcgagatttt ctttgttcca
2101 tggcaggccc gtcctccaca tttgagccat agcaggcaac gccttacact ccaatgtgaa
2161 ggcttccatt aaactgtatt gacaaagctc gtccttcaag attcggtcta actcgcacaa
2221 aacctccaca tcttttgcag cgtaaattaa ctgctcttga gttaaaactc ccgaccagtt
2281 tgacttttgc tgctccttat ctaagttaat ttttaaatac tcttttacaa catctgcgag
2341 accgtgcttc ctgccagttt ttccgttaga taacaagcgg ctggcaagca tggagcagcc
2401 gagaaaccgc gtatttgggt ggattccata ttcttgcaac cacgcaatat caaacacagc
2461 gttatgggca agccagtggc gctctccatt gctgaagaag cgccgcaaac gatcccagtc
2521 gctttcatct gtttgaaaaa agtcgatgac aacaataatc ttccgggttt cgcagccaag
2581 ctgaagcagc cgcagctttc ccatctctgg ctgaagctgg cacgtctccg tgtcaaagca
2641 gacgcttata gccgtgtcta gcttggagag gtgctccatg ccaaaaagaa cttcgtaact
2701 cacttcacgt cctccgggta ggagagacca aagtccatcc aatcccactc agagatcatc
2761 tcgccagggt tttcaggatg tggagcgcac cagccgtctt catcttcttc ccaaccggcg
2821 gctgtacgga ttttgtagat gcgatcgtgt tccgccattg cggcttcgat ctcgtccagg
2881 tggtcgtacc acgtagggca cgtccccatc atgcggagat tttcttgtgc tctatagaga
2941 gctgtggagt cagacatggg tagtgtcgtg aactccgtta gagtagcaca ctactgagtg
3001 accatgctct ccacaatagg aaaataatct aagtcgtaga aagtcatcac agccacgtca
3061 acgccgcatt cgagagctgc ggtaacctgc gtttcaaaat ctctaaaccc cctcatcgag
3121 tcctggtaag tgacctgctc aacagccagc acgcgcgagc ggtcgtcgta gctagtaaac
3181 cgcactaaag ctaagacgtc agagtcagtc aactcctgca ccttgcagta gataaatttg
3241 acatctgtgt tcatgcaggc aaacccccta tctggagtat gggtactcat accaaaaaac
3301 aagccacgga gccgtttaat taaccacttc atttacaaca cacatgacga tgtgctcgac
3361 cttgcggtgg tctacgccgt gacctgctct acgacgaact ttttgaacaa gctcatggat
3421 gtctttcgga ctgactagcc gctcttcagc agaaaaaacc cgttgtctga tcaacctgga
3481 acgggaaacg ccaagtaagt ctgcttcttt tttcaagcgt tccaggtcgg cttccgggaa
3541 agcaactttt acttctcgca tggtcgaaag tttttactcc aatacagtag cacattaacg
3601 ctgcttggct tttttgtgaa gctcacggat gtagtcccgt tcagcaaaaa gctctttcca
3661 gtcgtgggga ggttctggca tccattcctg gagcttggcc tcccatttct gaaaccgctg
3721 tttatcggtc agtcccactt agaccccgct tcacgcatca actgatcaat ctccgcgaaa
3781 gatcgcctcg cgcggggata ttgatctgac tgtcccattg gggcagatcc cttggtatca
3841 gacgctttag caatgggaca cccagcctct ttttcagaaa ctgtcccatt gctctcgggt
3901 gaatgggaca cctcctccga ttttggctgt tgtcccattg cttgtcccat tgcaaaaacc
3961 gcgccgtcac aaggtttttc ccccaatggg acactatctt caacctctcc gcgcacgcgc
4021 gtgtgtgggg gttgttcaac aacagctgtg taaagcagtg gagctttacc gcctttctgc
4081 cctggaacag cagccccgtg ggtcgttatc aagccccgac taacccagcg ttgaagcgct
4141 ttacggattg ctgtgacatt gcccccaaca atcgggtccg cgttcagctc tgttcggctg
4201 atggagcgtg ggtagatcgc tctaacgcgc gacagaacgc gatcagtaat tccgctaggc
4261 gacgtgtcgg tgctgtcgat ctctgcggtg aaatccgcga ttgagaaagt caggtcagac
4321 tcctggcgca taatcagcgc cgtgccgctc ctaccactac ggctcttctc aacatgaatg
4381 atccggctgt gccgtggagc gatgccctgc tcgatctgct tgtccgtggg ctcagcaagc
4441 ctccaggtct ctgtaacggc gtcacggatc gctgaggtgc ctctgaagcc gccttgcttg
4501 ttggcgtggt gaatgatcag gatggtggtc cgtgggaaca gagtgccgtt gtttctggtc
4561 agccaataca gcggcgtagc gaagtcggat ttgttctcgt caaacgcccg accaccagag
4621 cagccaatca gggagtcgat gatcacgatt ttcggttccc gctttttcag caaattttga
4681 aactgggcgt aatttcccaa attccagttg ggctcaatat gcacatcttt tgtgcgcgga
4741 aactcaacct catccagctg atcatccaaa tcagccaacg gctggtcgcc gttaagaatt
4801 acgcaaccac ctttcgccac tggagcatgc ttgccccgaa caacaaaagg tgatccggta
4861 acaacgtgct tagccagcgt ccaagcagca gtggatttgc ccttaccacc ttccgcatag
4921 agtacgacta ctgcgggtgt tgccagaacg tcaggaatta agaagtcgcg tttttcaacc
4981 ttcgatttaa gttcatccaa ggtgaaccca cctgtgtctt ctatgtatcc aatgtgatca
5041 acgtaaacac cttcaagttt tgactggtcc ttgtaacccg cctcgttttt aatacgattt
5101 atctcataat tacgtctgcc tggattttca atatccatgg cttccttcat ctgcttcatc
5161 gcctcgtcat acgagagggt ctcctgcctg taacggatcg gcgctgtttc gatctctgcc
5221 accaccgatg caagattgtt cccttgaaat cgagccttct ctgggtcgta gtgattagcc
5281 aggtgcatca agctgccaaa ccccagccct ccgtcagctt tgaagcccgc ctcccagcga
5341 tcagcgcagg gatcgccgtt cttccagtcg tcgctgtact cctcgtcttt ctgcgaccac
5401 tgccgccaga tgtttaagcc gtcttcatcc ggcatctcgg agtgcagcat cgcgccgatc
5461 cgccaccaga agtcatcaga cccacgtccc tgcggtggaa tgacagacaa gcagttttca
5521 gcgatggcaa ttttctcctc cctggaacgg cagctgtaac gcaggtcttt cctttgcgct
5581 ccgcttgttc cctcctgccg cttcttaaac gactcctcca tctccaccag aagccactca
5641 ggagcctctg gaatggcgtt cacatcgcct gaaagcttgt actccccgcc ttggtagtaa
5701 gcacccccta caaggccctg acggcgtatg ccccacagaa cctcccaacc ctgtttgctg
5761 gcagccaagc tgatcccagc aacctggccc catttctcct taggcacccg aaacaggtat
5821 ttagcggcat tctttttcgg agaaaccaca acaggagcct ccttgagggt ggctccccac
5881 ttccttttca acgacgcaag gttggcgtca acatcaagga tcaccagacc gtcgctgcgt
5941 ggacctgtaa acacgccgat cgccttgtac gtgtctgggt gctgttcgat gtagcgagcg
6001 gaagcgtgag ggctgaggtt ctctctgtgc gctcttccca gcggtgactt accgcaagcc
6061 acaccacctt tgtcgccggg cagcctgaag ccctgggcat agatcggtgc agtggcccag
6121 tttttgggaa gagtccttgt gaaatcagcg agattcattt gctacagtag tgccgttgaa
6181 ctttttacag acacccctgg aggcttctgc ggccccaggg gttttttcat tctacagcag
6241 ttgacagccc ccgccattgt gctacgttta tgaggcaccg ggcaacgtgc ccaccgcaat
6301 tttcaaatgc cttttctttc tcaaaaagcc gtctcagcag tagccggagg cactggtggt
6361 ggttatctaa acccctccaa gatccaatcc ggcagcaatg tgcgctttgc attgttgagc
6421 gaccagcctc ttgagtttta tgagtgctgg ggcgaagcca gcgacggttc gctcaagcct
6481 tttcgttttt ctgaggatcc aaaatccgac gacatcgagg ccgaaatggg tcctgattac
6541 acacggcgtc agaaccgtga tggcactgca cccgagccag caaagttcgc tcttgctgtt
6601 cctgtataca acttcgatac agagggcgtg cagattatgc agctcaccca aaaaagcatc
6661 atccgcgagt tggacggcat ttctcaaatg gaggactacg ccaatctgct ggagcatgat
6721 tttgttctcg gcaaagaggg caacggcctt aacaccgagt acagccttcg ccctgttccc
6781 cgtaagaagg gatcggataa ggcgattgac agtgcctgga ctgaagccaa gggcgctgga
6841 tttgagattg gtcgcttgtt gactggcgaa aacccattca aagccgactg atgttgtgcg
6901 gcaggactag aaaagtcatt aacttcgaat tcttgcctgc ccgcaatttg cgctgcaact
6961 gctcgggccg tgcggttgtg tacgagggtg caaattgcaa aagctcaggg ttctcaccgc
7021 agagtgctag tggttcctag gtactattca tggctggtac taaggcagga gcgtccgtaa
7081 gtccgcattc aatacaaggg ggctttctag ccccttttgt agtaagtaag cttgtaaaaa
7141 ctcagtgata gatgccagtc gatacccagg acgcgttagc cggtttacgg cgctggaact
7201 tggtacgtga tgactcgggc tcccaccgcg tttataggga cgaaaaaggc aacacatatg
7261 cgtcagtgac gcacattctc aaggaaacct caccgcaatg gcaaaaagat gccctggacc
7321 gttggcttga aagacctact gctcccgctg agcgtgacat tgcctgccag cgcgggactc
7381 ttgctcacga tcacgcggaa tatgtcctca aaacggcagc caagctggcg cgtaacagcg
7441 ctaacaagcg aggaagctgg aggactggag atgacggcct ggaacgtgcc cccaagggaa
7501 tcactacttg ggccatcgag aaggccattc agggggctcc tagggtctcc tggagcgcct
7561 ctggctacgc ccgaggtcta cggtcttgga tcggagaaaa cgtaactgcc attcacgcgg
7621 tcgaattttc tgtgcatgac ccacgcggct gggctggaac agcagacgct ctgctcgatg
7681 tgggtggcac gctttgcatc actgactgga agaccagcgt taacgcccgc agtgaagaaa
7741 tgttggctaa ctacatctgt caggctggag cgtattccct gggactccag accctgactg
7801 gcttaaagcc aaaaagcgga gctgttgtgg tggcacgtcg tagcggagca ccacaggtgc
7861 gcttgctcaa tgagttagaa ttacgtgggg cggagtgcca atggctagag agaatggact
//