LOCUS AP013900 7457 bp DNA linear HTG 30-OCT-2015 DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group G3, isolate: uvMED-CGF-C1C-MedDCM-OCT-S28-C153, *** SEQUENCING IN PROGRESS ***. ACCESSION AP013900 VERSION AP013900.1 DBLINK BioProject:PRJDB1484 KEYWORDS ENV; HTG; HTGS_PHASE2. SOURCE uncultured Mediterranean phage uvMED ORGANISM uncultured Mediterranean phage uvMED Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; environmental samples. REFERENCE 1 (bases 1 to 7457) AUTHORS Mizuno,C.M. and Ghai,R. TITLE Direct Submission JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases. Contact:Rohit Ghai Universidad Miguel Hernandez, Evolutionary Genomics Group, Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de Alicante, Alicante 3550, Spain REFERENCE 2 AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R. TITLE Expanding the Marine Virosphere Using Metagenomics JOURNAL PLoS Genet. 9, e1003987 (2013) REMARK Publication Status: Online-Only DOI:10.1371/journal.pgen.1003987 COMMENT URL:http://egg.umh.es ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.2.03 Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7457 /clone_lib="MedDCM-OCT" /collection_date="2007-10-15" /country="Spain" /db_xref="taxon:1407671" /environmental_sample /isolate="uvMED-CGF-C1C-MedDCM-OCT-S28-C153" /isolation_source="metagenomic fosmid library constructed from the 0.2-5um-size plankton collected from the deep chlorophyll maximum in the Mediterranean Sea off the coast of Alicante, Spain, 50m below sea surface" /lat_lon="38.4 N 0.13 W" /mol_type="genomic DNA" /organism="uncultured Mediterranean phage uvMED" CDS complement(284..535) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22859.1" /transl_table=11 /translation="MPQLHGNKAHLHILIDPNRAELVFEKAAEADQRPAAWIREAVYS ELKRVYPTSVYNEAMAKDQVQWRSSIRNRVEGRANQKDI" CDS complement(693..851) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22860.1" /transl_table=11 /translation="MISIYRTDRGWYSNFGGTVTYHQDFGEAMDAAYRQATRDGALKQ SDPDSNNG" CDS complement(851..2674) /codon_start=1 /product="DNA polymerase" /protein_id="BAR22861.1" /transl_table=11 /translation="MSYEVLFGMEHLSKLDTAISVCFDTETCQLQPEMGKLRLLQLGC ETRKIIVVIDLFQTDESDWDRLRRFFSNGERHWLAHNAVFDIAWLQEYGIHPNTRFLG CSMLASRLLSNGKTGRKHGLADVVKEYLKINLDKEQQKSNWSGVLTQEQLIYAAKDVE VLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLDYEHDI KELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQQLK SKLSAVLGVKLESVSKNALSEFAGHHPVVQMYLNWKKAEKRRQMITSIQEKMRPDGFV KASYMQLGAETGRMTCFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAV AQDKKMIQAFKDGEDLHTVTAEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM TLEEAQKVRSDWFQEFEGIAKWHKKENDKANNPNPRFKGKKCGIQFIEIPETGMRRDL PGDANRLTVRCNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVRE DAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQETH" CDS complement(2671..2928) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22862.1" /transl_table=11 /translation="MSDSTALYRAQENLRMMGTCPTWYDHLDEIEAAMAEHDRIYKTR TAAGWEEDEDGWCAPHPENPGEMISEWDWMDFGLSYPEDVK" CDS complement(2962..3225) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22863.1" /transl_table=11 /translation="MNTDVKFIYCKVQELTDSDVLALVRFTSYDDRSRVLAVEQVTYQ DSMRGFRDFETQVTAALECGVDVAVMTFYDLDYFPIVESMVTQ" CDS complement(3287..3532) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22864.1" /transl_table=11 /translation="MREVKVAFPEADLERLKKEADLLGVSRSRLIRQRVFSAEERLVS PKDIHELVQKVRRRAGHGVDHRKVEHIVMCVVNEVVN" CDS complement(3700..6129) /codon_start=1 /product="bifunctional DNA primase/polymerase" /protein_id="BAR22865.1" /transl_table=11 /translation="MNLADFTRTLPKNWATAPIYAQGFRLPGDKGGVACGKSPLGRAH RENLSPHASARYIEQHPDTYKAIGVFTGPRSDGLVILDVDANLASLKRKWGATLKEAP VVVSPKKNAAKYLFRVPKEKWGQVAGISLAASKQGWEVLWGIRRQGLVGGAYYQGGEY KLSGDVNAIPEAPEWLLVEMEESFKKRQEGTSGAQRKDLRYSCRSREEKIAIAENCLS VIPPQGRGSDDFWWRIGAMLHSEMPDEDGLNIWRQWSQKDEEYSDDWKNGDPCADRWE AGFKADGGLGFGSLMHLANHYDPEKARFQGNNLASVVAEIETAPIRYRQETLSYDEAM KQMKEAMDIENPGRRNYEINRIKNEAGYKDQSKLEGVYVDHIGYIEDTGGFTLDELKS KVEKRDFLIPDVLATPAVVVLYAEGGKGKSTAAWTLAKHVVTGSPFVVRGKHAPVAKG GCVILNGDQPLADLDDQLDEVEFPRTKDVHIEPNWNLGNYAQFQNLLKKREPKIVIID SLIGCSGGRAFDENKSDFATPLYWLTRNNGTLFPRTTILIIHHANKQGGFRGTSAIRD AVTETWRLAEPTDKQIEQGIAPRHSRIIHVEKSRSGRSGTALIMRQESDLTFSIADFT AEIDSTDTSPSGITDRVLSRVRAIYPRSISRTELNADPIVGGNVTAIRKALQRWVSRG LITTHGAAVPGQKGGKAPLLYTAVVEQPPHTRVRGEVEDSVPLGEKPCDDAVFAMGQA MGQQPKSEEVSHSPESNGTVSEKEAGCPIAKASDTKGSAPMGQSDQYPRARRSFAEID QLMREAGSKWD" CDS 6278..6862 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22866.1" /transl_table=11 /translation="MPFLSQKAVSAVAGGTGGGYLNPSKIQSGSNVRFALLSDQPLEF YECWGEASDGSLKPFRFSEDPKSDDIEAEMGPDYTRRQNRDGTAPEPAKFALAVPVYN FDTEGVQIMQLTQKSIIRELDGISQMEDYANLLEHDFVLGKEGNGLNTEYSLRPVPRK KGSDKAIDSAWTEAKGAGFEIGRLLTGENPFKAD" BASE COUNT 1695 a 2097 c 1761 g 1904 t ORIGIN 1 cccatggatg cacgacgtaa tacacatgca gcaggatggt gcgtaccatg cagaaaagtg 61 cgtcttgcgg gacaccgaca gcctgcagta attaaaaagc tactgataca atttctaatg 121 gtcggcgtat cttactcaga atagtttgag cttggttaaa actgttgtaa ctgcaggcat 181 ctgaggcggt tatagtccaa aaagtgtcgc cagagttttc ataataggcc gataaaaaca 241 tggactcgga atcggccact ttgagtgcaa agcgcataaa aagttagatg tctttctggt 301 tagctcggcc ttcgactctg ttgcgaatgg acgagcgcca ttgcacttga tctttggcca 361 tagcctcgtt gtaaacgcta gtcggataaa cccgctttag ctcggaatac acagcttctc 421 ttatccaagc cgctgggcgc tggtctgcct cagccgcttt ttcgaagaca agctccgctc 481 tgttggggtc aataaggatg tgtagatgcg ctttgttgcc gtgaagctgc ggcatgtgcc 541 tcaaattgct acaacaatgt taccacgtaa tagagtcatc gactttattt ttccaagcag 601 tgctttgggc gcggcgagct tgagcgcgtt ggttggtaca gcccgctctt acctcacgcg 661 ccccttctaa aaacatcgcg gcccgctgca gatcacccgt tgttgctgtc tggatcgctt 721 tgtttaagcg ctccatcacg agttgcctgc ctgtacgcgg catccatcgc ttccccaaag 781 tcttggtggt acgttaccgt ccctccaaag tttgagtacc agcctcgatc agtgcggtag 841 atgctgatca tcagtgagtc tcctgccagg ttttgccgaa agacacctca gccaaagcag 901 ggatctcgcc cagccatttg gcctctgcct cttccatcac ctgttttaag gtggctgccc 961 actcttcagc tgcatcctcc ctaacaagca acaaaatttc gtcatgcacc gcagccgcga 1021 tgcggaccgt ttcttccccc gcctctctaa caagcggcca cagcttgccc aaagcctgct 1081 tgagaatcgc cgcaccagcg ccctgaacag gcgtattaca gcgaacagtt aggcggttag 1141 cgtcaccagg cagatctctc ctcataccag tttcaggtat ttctataaac tgaataccgc 1201 acttcttgcc cttaaatcta gggttagggt tattagcttt gtcgttctct ttcttgtgcc 1261 atttagctat accttcaaac tcttgaaacc agtcggacct aactttctgc gcttcttcca 1321 acgtcatgct cacgttgctg cccgcagcat aattacgaag acccttagct ccggacccat 1381 acagaagacc aaaattggca gacttggcaa tctggcgcgt acacccaata gcttcagctg 1441 tcactgtgtg caagtcttcc ccgtctttga atgcctggat cattttcttg tcctgcgcca 1501 cagccgccgc taaacgcagc tccatctggc caaagtcagc gtcaacaatt agccagccct 1561 tcggagcttc tacgcaacca cgaaactgtt tgtccttagg tatctgctga ttgttcgggt 1621 tgaagcacgt catacgtcct gtttcagcgc ctaactgcat gtaactggct tttacaaacc 1681 catccgggcg catcttctcc tggatcgaag taatcatttg ccgtcttttt tcagctttct 1741 tccagttcaa atacatctga acaacagggt gatgtccagc aaactcgcta agcgcatttt 1801 tagacacact ctcaagcttt acccccagaa cagcagataa cttacttttc agttgctgag 1861 gactatttaa attaaagccc ttaagctttt tagttcctgc tctgacgcta ccctcgtcct 1921 tggcacgtaa attaaaagag tcgtcctcat ctctaggcag cttttggcct tcaggtaaag 1981 ccgaatcaag ctccctgata aactctttcg acagctcctt tatatcgtgt tcgtaatcta 2041 actttctctg tgcgagattt tctttgttcc atggcaggcc cgtcctccac atttgagcca 2101 tagcaggcaa cgccttacac tccaatgtga aggcttccat taaactgtat tgacaaagct 2161 cgtccttcaa gattcggtct aactcgcaca aaacctccac atcttttgca gcgtaaatta 2221 actgctcttg agttaaaact cccgaccagt ttgacttttg ctgctcctta tctaagttaa 2281 tttttaaata ctcttttaca acatctgcga gaccgtgctt cctgccagtt tttccgttag 2341 ataacaagcg gctggcaagc atggagcagc cgagaaaccg cgtatttggg tggattccat 2401 attcttgcaa ccacgcaata tcaaacacag cgttatgggc aagccagtgg cgctctccat 2461 tgctgaagaa gcgccgcaaa cgatcccagt cgctttcatc tgtttgaaaa aggtcgatga 2521 caacaataat cttccgggtt tcgcagccaa gctgaagcag ccgcagcttt cccatctctg 2581 gctgaagctg gcacgtctcc gtgtcaaagc agacgcttat agccgtgtct agcttggaga 2641 ggtgctccat gccaaaaaga acttcgtaac tcacttcacg tcctccgggt aggagagacc 2701 aaagtccatc caatcccact cagagatcat ctcgccaggg ttttcaggat gtggagcgca 2761 ccagccgtct tcatcttctt cccaaccggc ggctgtacgg gttttgtaga tgcgatcgtg 2821 ttccgccatt gctgcttcga tctcgtccag gtggtcgtac cacgtagggc acgtccccat 2881 catgcggaga ttttcttgtg ctctatagag agctgtggag tcagacatgg gtagtgtcgt 2941 gaactccgtt agagtagcac actactgagt gaccatgctc tccacaatag gaaaataatc 3001 taagtcgtag aaagtcatca cagccacgtc aacgccgcat tcgagagctg cggtaacctg 3061 cgtttcaaaa tctctaaacc ccctcatcga gtcctggtaa gtgacctgct caacagccag 3121 cacgcgcgag cggtcgtcgt agctagtaaa ccgcactaaa gctaagacgt cagagtcagt 3181 cagctcctgc accttgcagt agataaattt gacatctgtg ttcatgcagg caaaccccct 3241 atctggagta tgggtactca taccaaaaaa caagccacgg agccgtttaa ttaaccactt 3301 catttacaac acacatgacg atgtgctcga ccttgcggtg gtctacgccg tgacctgctc 3361 tacgacgaac tttttgaaca agctcatgga tgtctttcgg actgactagc cgctcttcag 3421 cagaaaaaac ccgttgtctg atcaacctgg aacgggaaac gccaagtaag tctgcttctt 3481 ttttcaagcg ttccaggtcg gcttccggga aagcaacttt tacttctcgc atggtcaaaa 3541 gtttttactc caatacagta gcacattaac gctgcttggc ttttttgcga agctcacgga 3601 tgtagtcccg ttcagcaaaa agctctttcc agtcgtgggg aggttctggc atccattcct 3661 ggagcttggc ctcccatttc tgaaaccgct gtttatcggt cagtcccact tagaccccgc 3721 ttcacgcatc aactgatcaa tctccgcgaa agatcgcctc gcgcggggat attgatctga 3781 ctgtcccatt ggggcagatc ccttggtatc agacgcttta gcaatgggac acccagcctc 3841 tttttcagaa actgtcccat tgctctcggg tgaatgggac acctcctccg attttggctg 3901 ttgtcccatt gcttgtccca ttgcaaaaac cgcgtcatca caaggttttt cccccaatgg 3961 gacactatct tcaacctctc cgcgcacgcg cgtgtgtggg ggttgttcaa caacagctgt 4021 gtaaagcagt ggagctttac cgcctttctg ccctggaaca gcagccccgt gggtcgttat 4081 caagccccga ctaacccagc gttgaagcgc tttacggatt gctgtgacat tgcccccaac 4141 aatcgggtcc gcgttcagct ctgttcggct gatggagcgt gggtagatcg ctctaacgcg 4201 cgacagaacg cgatcagtaa ttccgctagg cgacgtgtcg gtgctgtcga tctctgcggt 4261 gaaatccgcg attgagaaag tcaggtcaga ctcctggcgc ataatcagcg ccgtgccgct 4321 cctaccacta cggctcttct caacatgaat gatccggctg tgccgtggag cgatgccctg 4381 ctcgatctgc ttgtccgtgg gctcagcaag cctccaggtc tctgtaacgg cgtcacggat 4441 cgctgaggtg cctctgaagc cgccttgctt gttggcgtgg tgaatgatca ggatggtggt 4501 ccgtgggaac agagtgccgt tgtttctggt cagccaatac agcggcgtag cgaagtcgga 4561 tttgttctcg tcaaacgccc gaccaccaga gcagccaatc agggagtcga tgatcacgat 4621 tttcggttcc cgctttttca acaaattttg aaactgggcg taatttccca aattccagtt 4681 gggctcaata tgcacatctt ttgtgcgcgg aaactcaacc tcatccagct gatcatccaa 4741 atcagccaac ggctggtcgc cgttaagaat tacgcaacca cctttcgcca ctggagcatg 4801 cttgccccga acaacaaaag gtgatccggt aacaacgtgc ttagccagcg tccaagcagc 4861 agtggatttg cccttaccac cttccgcata gagtacgact actgcgggtg ttgccagaac 4921 gtcaggaatt aagaagtcgc gtttttcaac cttcgattta agttcatcca aggtgaaccc 4981 acctgtgtct tctatgtatc caatgtgatc aacgtaaaca ccttcaagtt ttgactggtc 5041 cttgtaaccc gcctcgtttt taatacgatt tatctcataa ttacgtctgc ctggattttc 5101 aatatccatg gcttccttca tctgcttcat cgcctcgtca tacgagaggg tctcctgcct 5161 gtaacggatc ggcgctgttt cgatctctgc caccaccgat gcaagattgt tcccttgaaa 5221 tcgagccttc tctgggtcgt agtgattagc caggtgcatc aagctgccaa accccagccc 5281 tccgtcagct ttgaagcccg cctcccagcg atcagcgcag ggatcgccgt tcttccagtc 5341 gtcgctgtac tcctcgtctt tctgcgacca ctgccgccag atgtttaagc cgtcttcatc 5401 cggcatctcg gagtgcagca tcgcgccgat ccgccaccag aagtcatcag acccacgtcc 5461 ctgcggtgga atgacagaca agcagttttc agcgatggca attttctcct ccctggaacg 5521 gcagctgtaa cgcaggtctt tcctttgcgc tccgcttgtt ccctcctgcc gcttcttaaa 5581 cgactcctcc atctccacca gaagccactc aggagcctct ggaatggcgt tcacatcgcc 5641 tgaaagcttg tactccccgc cttggtagta agcaccccct acaaggccct gacggcgtat 5701 gccccacaga acctcccaac cctgtttgct ggcagccaag ctgatcccag caacctggcc 5761 ccatttctcc ttaggcaccc gaaacaggta tttagcggca ttctttttcg gagaaaccac 5821 aacaggagcc tccttgaggg tggctcccca cttccttttc aacgacgcaa ggttggcgtc 5881 aacatcaagg atcaccagac cgtcgctgcg tggacctgta aacacgccga tcgccttgta 5941 cgtgtctggg tgctgttcga tgtagcgagc ggaagcgtga gggctgaggt tctctctgtg 6001 cgctcttccc agcggtgact taccgcaagc cacaccacct ttgtcgccgg gcagcctgaa 6061 gccctgggca tagatcggtg cagtggccca gtttttggga agagtccttg tgaaatcagc 6121 gagattcatt tgctacagta gtgccgttga actttttaca gacacccctg gaggcttctg 6181 cggccccagg ggttttttca ttctacagca gttgacagcc cccgccattg tgctacgttt 6241 atgaggcacc gggcaacgtg cccaccgcaa ttttcaaatg ccttttcttt ctcaaaaagc 6301 cgtctcagca gtagccggag gcactggtgg tggttatcta aacccctcca agatccaatc 6361 cggcagcaat gtgcgctttg cattgttgag cgaccagcct cttgagtttt atgagtgctg 6421 gggcgaagcc agcgacggtt cgctcaagcc ttttcgtttt tctgaggatc caaaatccga 6481 cgacatcgag gccgaaatgg gtcctgatta cacacggcgt cagaaccgtg atggcactgc 6541 acccgagcca gcaaagttcg ctcttgctgt tcctgtatac aacttcgata cagagggcgt 6601 gcagattatg cagctcaccc aaaaaagcat catccgcgag ttggacggca tttctcaaat 6661 ggaggactac gccaatctgc tggagcatga ttttgttctc ggcaaagagg gcaacggcct 6721 taacaccgag tacagccttc gccctgttcc ccgtaagaag ggatcggata aggcgattga 6781 cagtgcctgg actgaagcca agggcgctgg atttgagatt ggtcgcttgt tgactggcga 6841 aaacccattc aaagccgact gatgttgtgc ggcaggacta gaaaagtcat taacttcgaa 6901 ttcttgcctg cccgcaattt gcgctgcaac tgctcgggcc gtgcggttgt gtacgagggt 6961 gcaaattgca aaagctcagg gttctcaccg cagagtgcta gtggttccta ggtactattc 7021 atggctggta ctaaggcagg agcgtccgta agtccgcatt caatacaagg gggctttcta 7081 gccccttttg tagtaagtaa gcttgtaaaa actcagtgat agatgccagt cgatacccag 7141 gacgcgttag ccggtttacg gcgctggaac ttggtacgtg atgactcggg ctcccaccgc 7201 gtttataggg acgaaaaagg caacacatat gcgtcagtga cgcacattct caaggaaacc 7261 tcaccgcaat ggcaaaaaga tgccctggac cgttggcttg aaagacctac tgctcccgct 7321 gagcgtgaca ttgcctgcca gcgcgggact cttgctcacg atcacgcgga atatgtcctc 7381 aaaacggcag ccaagctggc gcgtaacagc gctaacaagc gaggaagctg gaggactgga 7441 gatgacggcc tggaacg //