LOCUS AP013897 8131 bp DNA linear HTG 30-OCT-2015 DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group G3, isolate: uvMED-CGF-C1B-MedDCM-OCT-S46-C260, *** SEQUENCING IN PROGRESS ***. ACCESSION AP013897 VERSION AP013897.1 DBLINK BioProject:PRJDB1484 KEYWORDS ENV; HTG; HTGS_PHASE2. SOURCE uncultured Mediterranean phage uvMED ORGANISM uncultured Mediterranean phage uvMED Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; environmental samples. REFERENCE 1 (bases 1 to 8131) AUTHORS Mizuno,C.M. and Ghai,R. TITLE Direct Submission JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases. Contact:Rohit Ghai Universidad Miguel Hernandez, Evolutionary Genomics Group, Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de Alicante, Alicante 3550, Spain REFERENCE 2 AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R. TITLE Expanding the Marine Virosphere Using Metagenomics JOURNAL PLoS Genet. 9, e1003987 (2013) REMARK Publication Status: Online-Only DOI:10.1371/journal.pgen.1003987 COMMENT URL:http://egg.umh.es ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.2.03 Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8131 /clone_lib="MedDCM-OCT" /collection_date="2007-10-15" /country="Spain" /db_xref="taxon:1407671" /environmental_sample /isolate="uvMED-CGF-C1B-MedDCM-OCT-S46-C260" /isolation_source="metagenomic fosmid library constructed from the 0.2-5um-size plankton collected from the deep chlorophyll maximum in the Mediterranean Sea off the coast of Alicante, Spain, 50m below sea surface" /lat_lon="38.4 N 0.13 W" /mol_type="genomic DNA" /organism="uncultured Mediterranean phage uvMED" CDS complement(325..486) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22834.1" /transl_table=11 /translation="MPEVVTTVLDDGCISISVGDFTGVVSSMHLIEPKTHQLQSAWLA REAELANAC" CDS complement(515..1279) /codon_start=1 /product="KilA-N domain-containing protein" /protein_id="BAR22835.1" /transl_table=11 /translation="MTAIKPMYGQLQTRSWNGTAIPRRTSDGYINATAMAKASGKQWN NYFQTDRTTTYMEALSRNLGIQVTSLYTAKPGEGTWIHERLAVDFARWISADFAVWMD AWFLEEVKGLSQVQNTQPVLAPTVLDTVDRSINLLERLGGVDERAQMLLRDVVLNTAM KSAGGTAPALEPAKELTLSEKLIELGCPSHKATPLAAKIGKEIKGLYRRKNGREPKSQ DQLVNGRRCSVALYERDFLNWLDSDFQAFIKEFCAS" CDS complement(1439..2023) /codon_start=1 /product="hypothetical protein" /protein_id="BAR22836.1" /transl_table=11 /translation="MGFISTKNKSAISAGSGGGYLNPSKIQSGGSVRFALLQDQPLEF FECWGESSEGGVKPFRFSDDPSPEDIQEEMGPEFERRMNREGTAPEKVKFAIAVPVYN YEASSVQIMQLSQKSLQNELDDISQMEDYANLLEWDFVMGKEGNGLETRYSLRPVPRK KGSQDSIESAWTEARAAGFDIGRLLTGENPFKAE" CDS 2173..4584 /codon_start=1 /product="bifunctional DNA primase/polymerase" /protein_id="BAR22837.1" /transl_table=11 /translation="MNLVDFVRSLPKHWATAPIYAKGAVMPNGKKAEGKSPLGRAAHN ELSPELTAQYIENAPETFAAVGVYSGTRSGGLVIFDVDANLGAIEEKWGKDLENAPRI TSPKKNAAKFLFVVPDKDRLIVSDLSHAAAGHEGWEVLWGRQGLLFGAYKDEGEYAFT GDVNKIPTAPEWLLERMREQYRKLHERTDNRKLRDSRYSNRSREEKIEIARSCLSVIE PRGANSEQFWWEIGAMIHSELPNEDGLKLWEEWSRRDNEYADDWKDGHNPCAERWENG FRGGGLGFGSLIRQADLVDPQKTRFQRDGIARLVEEIEALPIKYRPDLLSGEEVISRG LELEDSIENPALLDQAKTQLAQEAGRHKEGAAAIDRMLDAHLTFERNKEFRPRAVSEL DDASFDYLIPGLLPKPWLLLIHADGGTGKSAMCQTLCKHISQGRSFNVHGGLVNVPRG RCLWLNGDQSERIVRRQFDLIGVTAGVDVVGEWDMSWYSRFKKLQGPKEAPNYDLVVI DSLDGCNDSNPYEENRREYALPLKKLARRNGEDFGACTIIVIHHNNRNGSFRGTSAIR AAVDETWNMQKLEGKQLAELGLPDNTRIVTVEKSRDDREGQEMAFALLSDYTYQIEPV PEKDSKVNGPTRQMLDMLKEMRRTRIPWTVQDFVDHDLLGGVHKKRAIKYGLDKLEGQ KLIERCATPASWKGKGRPPAFYEAVGTDVPGKFCSRAREKTVKPPVKSQTPSPGTDLN NKADCQKSEIVKSPDEGLLTKPELLTKPIVGKNPSTATGQRFNADNQRHRGFDSDADD WGMWD" CDS 4828..5082 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22838.1" /transl_table=11 /translation="MKRIEITVDDADADRLKLEADQLGISRSDLLRERIKCTPLKTDK RLTPTDFYDLVERTRRRAGQGVDQRQVEGIVAFVFSELAG" CDS 5144..5407 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22839.1" /transl_table=11 /translation="MGHQVQFQYCKVRARAGVNALALVRFTSYDDEAKAVAVEQVTYQ DDQVGHRDFEYQVAAALDCGIDVAVMTAYDLDYFPLVEALVSS" CDS 5442..7280 /codon_start=1 /product="DNA polymerase" /protein_id="BAR22840.1" /transl_table=11 /translation="MSPQVFQGIEHLGKLATSQSLCFDTETLQLQPERGKLRLLQLGA RDRDTIVLIDCFQLDKGDWADLRWFFSTPTRFWLAHNAVFDLGWLQEHNIYPAGWVRC SMLASRLLTNGLPNSKHGLDSVVKRYLKDENGKPKELSKEQQRSDWSGDLSQEQLEYA ANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKID YEHDIKGLAKDFVLHLDAAMPEEHKLPRDEDGSFNLRPKDQGKLRDGTKKYAGFNINS PKQLVEKLTVVLGAAPRDANGKPSASRQALRSYAADHEVIQIYLEWKRCEKRRQMIES IQEKMDGTGFVRASYMQLGAESGRMSCIKPNNQQIPRDKQFRSCVEAPEGWLLVDADF GQMELRLAAAVADDERMIAAFQAGEDPHTVTAEAIGCDRQTAKSANFGLLYGSGATGL RNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDDKWAATRVPISG MRRYLQGDMNRLTVRCNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEIL LLVRENAAQEWAATLKQVMEDAEAKWLGEIPALAEVSVGKTWSETH" CDS 7356..7571 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22841.1" /transl_table=11 /translation="MGRWMPRTGRQLVMERLNKAIQAATTGDLQRAAMFLERAREVRA GCTNQRAQARRAQATAWKKKVDSSITW" CDS 7596..7847 /codon_start=1 /product="hypothetical protein" /protein_id="BAR22842.1" /transl_table=11 /translation="MAIRHGNKQYFQILLDPNRAELVQEEALKKQQRATAWIREAVYA ELKRVTSASVYSEAEAKDLARWRQSVRSQVEGRTKQNDD" BASE COUNT 1879 a 2048 c 2389 g 1815 t ORIGIN 1 cgttccaggc cgtcatctcc agtcctccag cttcctcgct tgttagcgct attacgcgcg 61 agtttcgctg ctgtcttgag cacgtactcc gcatgatcgt gagcaagagt cccgcgctgg 121 caggcaatgt cacgctccag ggcagagcct ggcttttgaa tccatcgatc aagtgcatct 181 ttctgccatt gcggagaggt ttctttgagg atgtgggtca ctgaggcgta agacacgccg 241 gactcgtctc ggtacacgcg gtgggggcca gagtcatcac ggaccaggga ccagcggcgt 301 agtccggcga gggcgttctg tgtatcagca ggcattggct aactcagctt cacgggccag 361 ccatgcactc tgtagttgat gggttttggg ctcgattagg tgcattgaac tgaccactcc 421 agtgaagtct cccactgaaa tggaaataca gccatcatcg agaactgttg tgactacttc 481 gggcatggcc cgttccaggt ggtcactcat gtttttacga ggcgcagaac tctttaataa 541 acgcttgaaa atcggagtca agccagttca agaagtcccg ctcataaagc gcaacagaac 601 aacgacggcc attgactagc tgatcttggc ttttaggttc cctaccgttc tttcttcggt 661 acagcccctt aatttccttg ccaatttttg cggctaatgg ggttgctttg tgcgaagggc 721 agcccaactc aatcagcttt tctgaaagcg ttagttcctt tgcgggttca agtgcgggag 781 cagtgccgcc cgctgatttc atcgcagtgt ttagcacgac atcacgcagc aacatctgag 841 cccgctcgtc tactccgcca agacgctcca gcaaattgat gctgcggtca acggtatcca 901 gcaccgtggg agccagaaca ggctgagtgt tttgcacttg agataggccc ttcacctcct 961 ccaaaaacca ggcgtccatc cacaccgcaa aatcagcact aatccaacga gcaaaatcca 1021 ccgccaagcg ttcgtgaatc cacgtcccct ctccaggctt ggcggtgtaa agggaagtta 1081 cctggattcc caggtttctt gacaaagcct ccatgtaggt ggtagtgcga tcggtttgaa 1141 agtagttatt ccactgctta ccgctggctt tggccatagc agtcgcgttt atgtagccat 1201 cagaggtgcg gcgggggatt gcggttccgt tccaggagcg ggtttgaagc tgtccgtaca 1261 tcggctttat ggcggtcatc aaactatacc tctatcacag agatttagct tgtatgacat 1321 tcttaccaag atctaatgcc ccaaggttat atgcaggaat atgccgaaat atgccggaag 1381 taagtaataa aaaaggggta cacacatggt gcacccctga gtcagtagcc ggtttgtgtt 1441 actcggcttt gaatgggttt tcgccggtca gcaggcggcc aatgtcgaag ccagcggcgc 1501 gtgcttcggt ccaggcagat tcgatgctgt cttggctgcc tttcttacgt ggcacggggc 1561 gcaggctgta acgagtttcc aagccgttgc cttccttacc catcacgaag tcccactcca 1621 acaggttggc gtagtcctcc atctggctga tgtcgtccag ttcgttctgc aagctctttt 1681 gagagagctg catgatctgg acgctgctgg cttcgtagtt gtagaccggc acagcgatgg 1741 cgaactttac cttctcgggt gcggtgccct cgcggttcat gcggcgctca aactcgggac 1801 ccatttcttc ctgaatgtcc tcagggctgg gatcgtcgct gaaacggaag ggctttacgc 1861 cgccttcaga tgactcgccc cagcactcga agaattcgag gggttggtct tgcaggaggg 1921 cgaagcggac gctgccgccg ctctggattt tggaggggtt gaggtagccg ccgccggaac 1981 cggcgctaat ggctgacttg ttcttggttg agatgaagcc catgggtcct ttgctgtagg 2041 cgcgatgccc ggtgcctcat caatgtagca aagcgtgcgg ggtttgcaac tgctatagaa 2101 tggaaaaacc cccgggagcc ggtgaagcac ccaggggtat gagtcaaaca ttccacgacc 2161 acactgtagc aaatgaatct cgttgatttc gttcgcagcc tgcccaagca ttgggccact 2221 gcgccgatct acgccaaggg cgctgtcatg cctaacggca aaaaagctga aggcaagtcc 2281 ccgcttgggc gtgccgcgca caatgagcta tcccctgagc tgacggctca gtacatcgaa 2341 aacgctccgg agacttttgc ggctgtcggt gtttacagcg gcactcgctc tggtgggctc 2401 gtcatatttg acgtggacgc caaccttggg gccatcgaag agaagtgggg aaaggatctc 2461 gaaaacgctc cacggatcac ctcaccgaaa aagaatgcgg ccaagtttct gtttgttgtt 2521 cctgataagg atcgactgat tgtttctgat ctcagccacg ctgctgctgg gcatgaaggt 2581 tgggaggtgc tctggggcag gcaaggtctg ctttttggtg cttacaaaga tgagggggag 2641 tacgccttta ctggcgatgt aaataaaatc cccaccgctc ctgaatggct tttggaacgg 2701 atgcgcgagc agtacagaaa gctgcacgaa cgaactgata accgcaaact tcgcgatagc 2761 cgttactcca accgttccag ggaggagaag attgagattg ctcggagttg tctgagtgtc 2821 atcgagcccc gtggtgccaa cagtgagcag ttctggtggg aaatcggggc gatgattcac 2881 agcgagctgc ctaacgagga cggcttgaag ctgtgggaag agtggagccg ccgcgataac 2941 gagtacgccg acgattggaa ggatggtcac aacccgtgtg ctgagcgctg ggagaacggg 3001 tttcgtgggg gcggccttgg atttgggtcg ctgatccgcc aggccgatct ggtggaccca 3061 cagaagaccc gatttcaaag ggacggtatt gcacgactgg tggaagagat cgaggcgctc 3121 ccgattaagt acaggccgga cctcctcagc ggtgaggaag tcatctcgcg ggggctggag 3181 ctagaggaca gtatcgaaaa cccggcgctg cttgaccagg ccaaaactca gctggcccaa 3241 gaggctgggc ggcataaaga aggggcggcg gccattgacc ggatgcttga tgctcacctc 3301 acgtttgagc gcaacaaaga gtttcgtccc agggccgtga gcgagcttga tgatgcctcg 3361 ttcgattatt tgattccggg cttgctgccg aagccttggt tgctgctgat tcacgcggac 3421 ggcggcacag gcaagtcggc aatgtgtcag acgctgtgta agcacatcag ccaggggcgg 3481 tcattcaacg ttcatggcgg tttggtcaac gtgcccaggg gccgctgcct ttggttgaac 3541 ggagaccaga gcgagcggat tgtgcggcgt cagtttgatc tgatcggtgt taccgctgga 3601 gttgatgttg tcggtgagtg ggacatgtcc tggtacagcc gcttcaagaa gctccagggt 3661 ccgaaggaag cgccgaacta tgacctcgtg gtgattgaca gcctggacgg ctgcaatgac 3721 tccaaccctt acgaggagaa ccgcagggag tacgcgctgc ccttgaagaa gcttgcacgg 3781 cgcaatggtg aggatttcgg ggcctgcacc atcatcgtga tccaccacaa caacaggaac 3841 ggcagtttcc gtggcactag cgccatcaga gcggccgtag acgagacgtg gaacatgcag 3901 aagctggagg gcaagcagct ggctgagttg ggcctgcctg acaacaccag gatcgtgact 3961 gttgaaaagt cacgcgatga ccgcgaagga caagagatgg cctttgcgct gctgtcggac 4021 tacacgtacc agatcgagcc ggtgccggag aaagacagca aggtcaacgg accaactcgg 4081 cagatgctgg acatgctcaa ggaaatgcgg cgtacgcgca taccttggac ggtccaggat 4141 tttgtggatc acgacctgct gggaggcgta cataagaagc gcgccattaa gtacggcttg 4201 gacaagctgg aggggcagaa gctcattgaa cgttgtgcta ccccagcgag ttggaagggt 4261 aaagggcggc ctcctgcgtt ctacgaggcg gttggtacag acgttccagg taagttctgc 4321 tctcgcgcgc gtgaaaagac cgtgaaaccc cctgttaaaa gtcaaactcc ttcccctgga 4381 acggatttaa acaacaaagc ggattgtcaa aagtccgaaa ttgtcaaaag tccggacgaa 4441 ggacttttaa caaaaccaga acttttaaca aagcctattg ttggtaagaa cccttccacc 4501 gcaacgggtc agcgttttaa cgcggataat cagagacata ggggtttcga ctctgacgcg 4561 gatgattggg gtatgtggga ctgacttact aggcaaaagc ttgtcaatgt gctactctgt 4621 gcacaggatt taccgggctg tgaccgaaaa acaaattcaa gccaccgtta gaacggctca 4681 ccattacggt gggtcgtttc tcagcaaagt tgctgaagct gccatgagcg cggacccacg 4741 caaccgaacc cgcgtcttag acgctttccc agaaatcgtg tctaagtacg gtccaggcag 4801 tgctttttac aacgaatatc tttgagcatg aaaaggattg aaatcacggt ggacgacgct 4861 gacgcggatc gtctgaagct tgaagctgac cagttgggca tttcacggtc tgacttgctc 4921 cgcgagcgaa ttaagtgcac tccccttaaa acggacaagc gtttaacgcc cactgatttt 4981 tacgatttgg tggagcgcac taggcgcaga gctggccagg gggtggacca gcgtcaggtt 5041 gaagggatcg ttgcgtttgt tttcagtgaa ctggctggct aggcagctgg ttcgtctgct 5101 catacgcaag cggggccata ctccctttaa gcgagtagcc cgcatgggac accaagttca 5161 gttccaatac tgcaaggtca gggctcgggc gggtgtaaat gctctagccc tggtgcgctt 5221 cactagctac gacgacgagg ctaaggctgt agctgttgag caagtgacgt accaggacga 5281 tcaggtaggg catcgagact ttgaatatca agtggctgct gccctcgatt gcgggattga 5341 tgtagccgtg atgacggcat acgatttgga ctattttccg ctggtagaag ccctggtatc 5401 ttcttgatgt gctacattaa gggagtcata cgacaccacc catgtctccc caagtttttc 5461 agggcattga gcacttaggc aagctcgcca cctctcagtc cctctgcttt gacacagaaa 5521 cgctccagct gcagcctgag cgtggcaagt tgcggctctt gcaattaggt gcccgagacc 5581 gcgacactat tgtccttatt gactgctttc aacttgacaa gggcgactgg gctgatctcc 5641 gctggttctt cagcactcca acccgattct ggctggccca taacgctgtc ttcgatcttg 5701 gttggctcca ggaacacaac atctatccgg ctgggtgggt ccgttgctcc atgctggcca 5761 gccgacttct cacaaacggc ctgcctaact cgaagcacgg tctcgacagc gttgtaaagc 5821 gctatctcaa agacgaaaac ggaaagccca aagagctgtc gaaagaacag cagcgttctg 5881 attggagcgg cgacctcagt caagagcagc tggagtacgc agctaatgat gttgcggctc 5941 tgatggagct agatcccatc ttggagcacc gcattagccg ggacaggctc ggaccagcct 6001 tcaagcttga gtgccgcgct ttacccgcga tggcgcagat gtggcgcaca ggtctgccct 6061 ggaacgctga gaacttgcag caacgcaaga tcgattacga gcacgacatc aaggggttgg 6121 ccaaagactt tgtgttacat cttgatgctg cgatgcctga agaacacaag ttgccgcgcg 6181 atgaggatgg cagttttaat ctgcgaccta aggatcaagg caagcttcgg gacggcacca 6241 aaaagtacgc aggcttcaat atcaatagcc ccaagcagct tgtggaaaaa cttactgtgg 6301 tacttggcgc tgccccgcgt gatgccaacg gcaagcccag tgcatccagg caggcactgc 6361 gttcttacgc cgcagatcac gaagtcatcc agatttacct ggagtggaaa aggtgtgaaa 6421 aacgccgtca gatgatcgag tcgattcaag aaaagatgga cggcactggc tttgtgcgtg 6481 ccagctacat gcagttgggg gcggagtcag ggcgcatgtc ctgcatcaag cccaacaatc 6541 agcagattcc gcgtgacaag cagttccgca gttgtgtcga agcgcctgaa ggttggctgc 6601 tagttgacgc agatttcggc cagatggagc tgcgacttgc tgcagcggtg gcagatgatg 6661 agcggatgat tgctgcgttc caggccgggg aggatccgca cactgtcact gcggaagcta 6721 tcggctgtga ccgtcagacc gcgaaatcag caaacttcgg tctgctgtat gggtctggcg 6781 ctacaggttt gcggaattac gcaggtggca tgggcatcac catgacccag gaacgggccg 6841 ctgatattag aaatgaatgg cttggtgtgt tccagggagt agcgaagtgg cagcgggaca 6901 acgcaaaaga agctgatgaa acgcaggacg ataaatgggc ggcaaccagg gttccgatct 6961 cagggatgag gcgttacctg caaggcgaca tgaaccggct gactgttcgc tgtaacaccc 7021 caatacaggg agctggtgct gccatcctta agtgcgcttt ggggaatctg tggccgaagg 7081 tcaaggaggc gggcgaagac accgtgcgta ttgctgctgc ggtgcatgac gaaattctgt 7141 tgcttgttag ggaaaatgca gctcaggagt gggcagcgac cttaaaacag gtgatggagg 7201 atgccgaggc caagtggctt ggagagattc ctgcgctggc tgaggtgtct gtaggtaaaa 7261 cctggagcga gactcactga tggtcaacgt ctactgcaca gatgaggggt ggttctgttc 7321 ctgtggagga cgggtaacgt accaccagga tcttcgtggg gcgatggatg ccgcgtacag 7381 gcaggcaact cgtgatggaa cgtttaaaca aggcgatcca ggcagcaacg acgggtgatt 7441 tgcaacgggc ggcgatgttc ttagagcggg cgcgcgaggt aagggcgggc tgtacgaatc 7501 agcgcgccca agctcgccgt gctcaagcca ctgcttggaa aaagaaggtc gattcgtcta 7561 ttacatggta acgtgcttgt agcacagtga aaactatggc tattcgccac ggaaacaaac 7621 agtactttca aatactgctt gacccgaacc gggctgagct agttcaagag gaagcgttga 7681 agaagcaaca gcgcgcaaca gcttggataa gagaagctgt atacgcagag ttgaagcggg 7741 ttacttcggc tagtgtctat agcgaggccg aagctaaaga cctggcgcgg tggcggcagt 7801 ccgttcgcag ccaggttgag ggtcggacca aacaaaacga cgactgattt tatttatgcg 7861 ctttgcactc aaagtggccg attctgagtc catgttttta tcggcttatt atgaaaaatc 7921 tggcgacact ttttggacta taaccgcctc agatgcttgc agttacaaca gttttaacca 7981 agctcaaact attctgagta agatacgtag acctttagaa attgtgccag tagcttttta 8041 gctacggcag actgtcagtc tcctgtaagg cgcacttttc tgcatggtac gcaccatcct 8101 gctgcatgtg tattacgtcg tgcatccatg g //