LOCUS AP013895 5384 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1B-MedDCM-OCT-S42-C280, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013895
VERSION AP013895.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 5384)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5384
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1B-MedDCM-OCT-S42-C280"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS 1814..2077
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22817.1"
/transl_table=11
/translation="MIGVCGTDLLGKSLSMCYSVHRIYRAVTEKQIQATVRTAHHYGG
SFLSKVAEAAMSADPRNRTRVLDAFPEIVSKYGPGSAFYNEYL"
CDS 2080..2334
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22818.1"
/transl_table=11
/translation="MKRIEITVDDADADRLKLEADQLGISRSDLLRERIKCTPLKTDK
RLTPTDFYDLVERTRRRAGQGVDQRQVEGIVAFVFSELAG"
CDS 2396..2659
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22819.1"
/transl_table=11
/translation="MGHQVQFQYCKVRARAGVNALALVRFTSYDDEAKAVAVEQVTYQ
DDQVGHRDFEYQVAAALDCGIDVAVMTAYDLDYFPLVEALVSS"
CDS 2694..4532
/codon_start=1
/product="DNA polymerase"
/protein_id="BAR22820.1"
/transl_table=11
/translation="MSPQVFQGIEHLGKLATSQSLCFDTETLQLQPERGKLRLLQLGA
RDRDTIVLIDCFQLDKGDWADLRWFFSTPTRFWLAHNAVFDLGWLQEHNIYPAGWVRC
SMLASRLLTNGLPNSKHGLDSVVKRYLKDENGKPKELSKEQQRSDWSGDLSQEQLEYA
ANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKID
YEHDIKGLAKDFVLHLDAAMPEEHKLPRDEDGSFNLRPKDQGKLRDGTKKYAGFNINS
PKQLVEKLTVVLGAAPRDANGKPSASRQALRSYAADHEVIQIYLEWKRCEKRRQMIES
IQEKMDGTGFVRASYMQLGAESGRMSCIKPNNQQIPRDKQFRSCVEAPEGWLLVDADF
GQMELRLAAAVADDERMIAAFQAGEDPHTVTAEAIGCDRQTAKSANFGLLYGSGATGL
RNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDDKWAATRVPISG
MRRYLQGDMNRLTVRCNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEIL
LLVRENAAQEWAATLKQVMEDAEAKWLGEIPALAEVSVGKTWSETH"
CDS 4532..4690
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22821.1"
/transl_table=11
/translation="MVNVYCTDEGWFCSCGGRVTYHQDLRGAMDAAYRQATRDGTFKQ
GDPGSNDG"
CDS 4848..5099
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22822.1"
/transl_table=11
/translation="MAIRHGNKQYFQILLDPNRAELVQEEALKKQQRATAWIREAVYA
ELKRVTSASVYSEAEAKDLARWRQSVRSQVEGRTKQNDD"
BASE COUNT 1286 a 1320 c 1623 g 1155 t
ORIGIN
1 cttcgcgata gccgttactc caaccgttcc agggaggaga agattgagat tgctcggagt
61 tgtctgagtg tcatcgagcc ccgtggtgcc aacagtgagc agttctggtg ggaaatcggg
121 gcgatgattc acagcgagct gcctaacgag gacggcttga agctgtggga agagtggagc
181 cgccgcgata acgagtacgc cgacgattgg aaggatggtc acaacccgtg tgctgagcgc
241 tgggagaacg ggtttcgtgg gggcggcctt ggatttgggt cgctgatccg ccaggccgat
301 ctggtggacc cacagaagac ccgatttcaa agggacggta ttgcacgact ggtggaagag
361 atcgaggcgc tcccgattaa gtacaggccg gacctcctca gcggtgagga agtcatctcg
421 cgggggctgg agctagagga cagtatcgaa aacccggcgc tgcttgacca ggccaaaact
481 cagctggccc aagaggctgg gcggcataaa gaaggggcgg cggccattga ccggatgctt
541 gatgctcacc tcacgtttga gcgcaacaaa gagtttcgtc ccagggccgt gagcgagctt
601 gatgatgcct cgttcgatta tttgattccg ggcttgctgc cgaagccttg gttgctgctg
661 attcacgcgg acggcggcac aggcaagtcg gcaatgtgtc agacgctgtg taagcacatc
721 agccaggggc ggtcattcaa cgttcatggc ggtttggtca acgtgcccag gggccgctgc
781 ctttggttga acggagacca gagcgagcgg attgtgcggc gtcagtttga tctgatcggt
841 gttaccgctg gagttgatgt tgtcggtgag tgggacatgt cctggtacag ccgcttcaag
901 aagctccagg gtccgaagga agcgccgaac tatgacctcg tggtgattga cagcctggac
961 ggctgcaatg actccaaccc ttacgaggag aaccgcaggg agtacgcgct gcccttgaag
1021 aagcttgcac ggcgcaatgg tgaggatttc ggggcctgca ccatcatcgt gatccaccac
1081 aacaacagga acggcagttt ccgtggcact agcgccatca gagcggccgt agacgagacg
1141 tggaacatgc agaagctgga gggcaagcag ctggctgagt tgggcctgcc tgacaacacc
1201 aggatcgtga ctgttgaaaa gtcacgcgat gaccgcgaag gacaagagat ggcctttgcg
1261 ctgctgtcgg actacacgta ccagatcgag ccggtgccgg agaaagacag caaggtcaac
1321 ggaccaactc ggcagatgct ggacatgctc aaggaaatgc ggcgtacgcg cataccttgg
1381 acggtccagg attttgtgga tcacgacctg ctgggaggcg tacataagaa gcgcgccatt
1441 aagtacggct tggacaagct ggaggggcag aagctcattg aacgttgtgc taccccagcg
1501 agttggaagg gtaaagggcg gcctcctgcg ttctacgagg cggttggtac agacgttcca
1561 ggtaagttct gctctcgcgc gcgtgaaaag accgtgaaac cccctgttaa aagtcaaact
1621 ccttcccctg gaacggattt aaacaacaaa gcggattgtc aaaagtccga aattgtcaaa
1681 agtccggacg aaggactttt aacaaaacca gaacttttaa caaagcctat tgttggtaag
1741 aacccttcca ccgcaacggg tcagcgtttt aacgcggata atcagagaca taggggtttc
1801 gactctgacg cggatgattg gggtatgtgg gactgactta ctaggcaaaa gcttgtcaat
1861 gtgctactct gtgcacagga tttaccgggc tgtgaccgaa aaacaaattc aagccaccgt
1921 tagaacggct caccattacg gtgggtcgtt tctcagcaaa gttgctgaag ctgccatgag
1981 cgcggaccca cgcaaccgaa cccgcgtctt agacgctttc ccagaaatcg tgtctaagta
2041 cggtccaggc agtgcttttt acaacgaata tctttgagca tgaaaaggat tgaaatcacg
2101 gtggacgacg ctgacgcgga tcgtctgaag cttgaagctg accagttggg catttcacgg
2161 tctgacttgc tccgcgagcg aattaagtgc actcccctta aaacggacaa gcgtttaacg
2221 cccactgatt tttacgattt ggtggagcgc actaggcgca gagctggcca gggggtggac
2281 cagcgtcagg ttgaagggat cgttgcgttt gttttcagtg aactggctgg ctaggcagct
2341 ggttcgtctg ctcatacgca agcggggcca tactcccttt aagcgagtag cccgcatggg
2401 acaccaagtt cagttccaat actgcaaggt cagggctcgg gcgggtgtaa atgctctagc
2461 cctggtgcgc ttcactagct acgacgacga ggctaaggct gtagctgttg agcaagtgac
2521 gtaccaggac gatcaggtag ggcatcgaga ctttgaatat caagtggctg ctgccctcga
2581 ttgcgggatt gatgtagccg tgatgacggc atacgatttg gactattttc cgctggtaga
2641 agccctggta tcttcttgat gtgctacatt aagggagtca tacgacacca cccatgtctc
2701 cccaagtttt tcagggcatt gagcacttag gcaagctcgc cacctctcag tccctctgct
2761 ttgacacaga aacgctccag ctgcagcctg agcgtggcaa gttgcggctc ttgcaattag
2821 gtgcccgaga ccgcgacact attgtcctta ttgactgctt tcaacttgac aagggcgact
2881 gggctgatct ccgctggttc ttcagcactc caacccgatt ctggctggcc cataacgctg
2941 tcttcgatct tggttggctc caggaacaca acatctatcc ggctgggtgg gtccgttgct
3001 ccatgctggc cagccgactt ctcacaaacg gcctgcctaa ctcgaagcac ggtctcgaca
3061 gcgttgtaaa gcgctatctc aaagacgaaa acggaaagcc caaagagctg tcgaaagaac
3121 agcagcgttc tgattggagc ggcgacctca gtcaagagca gctggagtac gcagctaatg
3181 atgttgcggc tctgatggag ctagatccca tcttggagca ccgcattagc cgggacaggc
3241 tcggaccagc cttcaagctt gagtgccgcg ctttacccgc gatggcgcag atgtggcgca
3301 caggtctgcc ctggaacgct gagaacttgc agcaacgcaa gatcgattac gagcacgaca
3361 tcaaggggtt ggccaaagac tttgtgttac atcttgatgc tgcgatgcct gaagaacaca
3421 agttgccgcg cgatgaggat ggcagtttta atctgcgacc taaggatcaa ggcaagcttc
3481 gggacggcac caaaaagtac gcaggcttca atatcaatag ccccaagcag cttgtggaaa
3541 aacttactgt ggtacttggc gctgccccgc gtgatgccaa cggcaagccc agtgcatcca
3601 ggcaggcact gcgttcttac gccgcagatc acgaagtcat ccagatttac ctggagtgga
3661 aaaggtgtga aaaacgccgt cagatgatcg agtcgattca agaaaagatg gacggcactg
3721 gctttgtgcg tgccagctac atgcagttgg gggcggagtc agggcgcatg tcctgcatca
3781 agcccaacaa tcagcagatt ccgcgtgaca agcagttccg cagttgtgtc gaagcgcctg
3841 aaggttggct gctagttgac gcagatttcg gccagatgga gctgcgactt gctgcagcgg
3901 tggcagatga tgagcggatg attgctgcgt tccaggccgg ggaggatccg cacactgtca
3961 ctgcggaagc tatcggctgt gaccgtcaga ccgcgaaatc agcaaacttc ggtctgctgt
4021 atgggtctgg cgctacaggt ttgcggaatt acgcaggtgg catgggcatc accatgaccc
4081 aggaacgggc cgctgatatt agaaatgaat ggcttggtgt gttccaggga gtagcgaagt
4141 ggcagcggga caacgcaaaa gaagctgatg aaacgcagga cgataaatgg gcggcaacca
4201 gggttccgat ctcagggatg aggcgttacc tgcaaggcga catgaaccgg ctgactgttc
4261 gctgtaacac cccaatacag ggagctggtg ctgccatcct taagtgcgct ttggggaatc
4321 tgtggccgaa ggtcaaggag gcgggcgaag acaccgtgcg tattgctgct gcggtgcatg
4381 acgaaattct gttgcttgtt agggaaaatg cagctcagga gtgggcagcg accttaaaac
4441 aggtgatgga ggatgccgag gccaagtggc ttggagagat tcctgcgctg gctgaggtgt
4501 ctgtaggtaa aacctggagc gagactcact gatggtcaac gtctactgca cagatgaggg
4561 gtggttctgt tcctgtggag gacgggtaac gtaccaccag gatcttcgtg gggcgatgga
4621 tgccgcgtac aggcaggcaa ctcgtgatgg aacgtttaaa caaggcgatc caggcagcaa
4681 cgacgggtga tttgcaacgg gcggcgatgt tcttagagcg ggcgcgcgag gtaagggcgg
4741 gctgtacgaa tcagcgcgcc caagctcgcc gtgctcaagc cactgcttgg aaaaagaagg
4801 tcgattcgtc tattacatgg taacgtgctt gtagcacagt gaaaactatg gctattcgcc
4861 acggaaacaa acagtacttt caaatactgc ttgacccgaa ccgggctgag ctagttcaag
4921 aggaagcgtt gaagaagcaa cagcgcgcaa cagcttggat aagagaagct gtatacgcag
4981 agttgaagcg ggttacttcg gctagtgtct atagcgaggc cgaagctaaa gacctggcgc
5041 ggtggcggca gtccgttcgc agccaggttg agggtcggac caaacaaaac gacgactgat
5101 tttatttatg cgctttgcac tcaaagtggc cgattctgag tccatgtttt tatcggctta
5161 ttatgaaaaa tctggcgaca ctttttggac tataaccgcc tcagatgctt gcagttacaa
5221 cagttttaac caagctcaaa ctattctgag taagatacgt agacctttag aaattgtgcc
5281 agtagctttt tagctacggc agactgtcag tctcctgtaa ggcgcacttt tctgcatggt
5341 acgcaccatc ctgctgcatg tgtattacgt cgtgcatcca tggg
//