LOCUS AP013892 7256 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1B-MedDCM-OCT-S33-C230, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013892
VERSION AP013892.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 7256)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7256
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1B-MedDCM-OCT-S33-C230"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(437..598)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22774.1"
/transl_table=11
/translation="MPEVVTTVLDDGCISISVGDFTGVVSSMHLIEPKTHQLQSAWLA
REAELANAC"
CDS complement(627..1391)
/codon_start=1
/product="KilA-N domain-containing protein"
/protein_id="BAR22775.1"
/transl_table=11
/translation="MTAIKPMYGQLQTRSWNGTAIPRRTSDGYINATAMAKASGKQWN
NYFQTDRTTTYMEALSRNLGIQVTSLYTAKPGEGTWIHERLAVDFARWISADFAVWMD
AWFLEEVKGLSQVQNTQPVLAPTVLDTVDRSINLLERLGGVDERAQMLLRDVVLNTAM
KSAGGTAPALEPAKELTLSEKLIELGCPSHKATPLAAKIGKEIKGLYRRKNGREPKSQ
DQLVNGRRCSVALYERDFLNWLDSDFQAFIKEFCAS"
CDS complement(1551..2135)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22776.1"
/transl_table=11
/translation="MGFISTKNKSAISAGSGGGYLNPSKIQSGGSVRFALLQDQPLEF
FECWGESSEGGVKPFRFSDDPSPEDIQEEMGPEFERRMNREGTAPEKVKFAIAVPIYN
YEASSVQIMQLSQKSLQNELDDISQMEDYANLLEWDFVMGKEGNGLETRYSLRPVPRK
KGSQDSIESAWTEARAAGFDIGRLLTGENPFKAE"
CDS 2285..4696
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22777.1"
/transl_table=11
/translation="MNLVDFVRSLPKHWATAPIYAKGAVMPNGKKAEGKSPLGRAAHN
ELSPELTAQYIENAPETFAAVGVYSGTRSGGLVIFDVDANLGAIEEKWGKDLENAPRI
TSPKKNAAKFLFVVPDKDRLIVSDLSHAAAGHEGWEVLWGRQGLLFGAYKDEGEYAFT
GDVNKIPTAPEWLLERMREQYRKLHERTDNRKLRDSRYSNRSREEKIEIARSCLSVIE
PRGANSEQFWWEIGAMIHSELPNEDGLKLWEEWSRRDNEYADDWKDGHNPCAERWENG
FRGGGLGFGSLIRQADLVDPQKTRFQRDGIARLVEEIEALPIKYRPDLLSGEEVISRG
LELEDSIENPALLDQAKTQLAQEAGRHKEGAAAIDRMLDAHLTFERNKEFRPRAVSEL
DDASFDYLIPGLLPKPWLLLIHADGGTGKSAMCQTLCKHISQGRSFNVHGGLVNVPRG
RCLWLNGDQSERIVRRQFDLIGVTAGVDVVGEWDMSWYSRFKKLQGPKEAPNYDLVVI
DSLDGCNDSNPYEENRREYALPLKKLARRNGEDFGACTIIVIHHNNRNGSFRGTSAIR
AAVDETWNMQKLEGKQLAELGLPDNTRIVTVEKSRDDREGQEMAFALLSDYTYQIEPV
PEKDSKVNGPTRQMLDMLKEMRRTRIPWTVQDFVDHDLLGGVHKKRAIKYGLDKLEGQ
KLIERCATPASWKGKGRPPAFYEAVGTDVPGKFCSRAREKTVKPPVKSQTPSPGTDLN
NKADCQKSEIVKSPDEGLLTKPELLTKPIVGKNPSTATGQRFNADNQRHRGFDSDADD
WGMWD"
CDS 4940..5194
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22778.1"
/transl_table=11
/translation="MKRIEITVDDADADRLKLEADQLGISRSDLLRERIKCTPLKTDK
RLTPTDFYDLVERTRRRAGQGVDQRQVEGIVAFVFSELAG"
CDS 5256..5519
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22779.1"
/transl_table=11
/translation="MGHQVQFQYCKVRARAGVNALALVRFTSYDDEAKAVAVEQVTYQ
DDQVGHRDFEYQVAAALDCGIDVAVMTAYDLDYFPLVEALVSS"
BASE COUNT 1649 a 1866 c 2135 g 1606 t
ORIGIN
1 ctctccgatc caagtccgta gacctcgggc gtagccagag gcgctccagg ggaccctagg
61 agccccctga atggccttct cgatggccca ggtagtgatc cccttagggg cacgttccag
121 gccgtcatct ccagtcctcc agcttcctcg cttgttagcg ctattacgcg cgagtttcgc
181 tgctgtcttg agcacgtact ccgcatgatc gtgagcaaga gtcccgcgct ggcaggcaat
241 gtcacgctcc agggcagagc ctggcttttg aatccatcga tcaagtgcat ctttctgcca
301 ttgcggagag gtttctttga ggatgtgggt cactgaggcg taagacacgc cggactcgtc
361 tcggtacacg cggtgggggc cagagtcatc acggaccagg gaccagcggc gtagtccggc
421 gagggcgttc tgtgtatcag caggcattgg ctaactcagc ttcacgggcc agccatgcac
481 tctgtagttg atgggttttg ggctcgatta ggtgcattga actgaccact ccagtgaagt
541 ctcccactga aatggaaata cagccatcat cgagaactgt tgtgactact tcgggcatgg
601 cccgttccag gtggtcactc atgtttttac gaggcgcaga actctttaat aaacgcttga
661 aaatcggagt caagccagtt caagaagtcc cgctcataaa gcgcaacaga acaacgacgg
721 ccattgacta gctgatcttg gcttttaggt tccctaccgt tctttcttcg gtacagcccc
781 ttaatttcct tgccaatttt tgcggctaat ggggttgctt tgtgcgaagg gcagcccaac
841 tcaatcagct tttctgaaag cgttagttcc tttgcgggtt caagtgcggg agcagtgccg
901 cccgctgatt tcatcgcagt gtttagcacg acatcacgca gcaacatctg agcccgctcg
961 tctactccgc caagacgctc cagcaaattg atgctgcggt caacggtatc cagcaccgtg
1021 ggagccagaa caggctgagt gttttgcact tgagataggc ccttcacctc ctccaaaaac
1081 caggcgtcca tccacaccgc aaaatcagca ctaatccaac gagcaaaatc caccgccaag
1141 cgttcgtgaa tccacgtccc ctctccaggc ttggcggtgt aaagggaagt tacctggatt
1201 cccaggtttc ttgacaaagc ctccatgtag gtggtagtgc gatcggtttg aaagtagtta
1261 ttccactgct taccgctggc tttggccata gcagtcgcgt ttatgtagcc atcagaggtg
1321 cggcggggga ttgcggttcc gttccaggag cgggtttgaa gctgtccgta catcggcttt
1381 atggcggtca tcaaactata cctctatcac agagatttag cttgtatgac attcttacca
1441 agatctaatg ccccaaggtt atatgcagga atatgccgaa atatgccgga agtaagtaat
1501 aaaaaagggg tacacacatg gtgcacccct gagtcagtag ccggtttgtg ttactcggct
1561 ttgaatgggt tttcgccggt cagcaggcgg ccaatgtcga agccagcggc gcgtgcttcg
1621 gtccaggcag attcgatgct gtcttggctg cctttcttac gtggcacggg gcgcaggctg
1681 taacgagttt ccaagccgtt gccttcctta cccatcacga agtcccactc caacaggttg
1741 gcgtagtcct ccatctggct gatgtcgtcc agttcgttct gcaagctctt ttgagagagc
1801 tgcatgatct ggacgctgct ggcttcgtag ttgtagatcg gcacagcgat ggcgaacttt
1861 accttctcgg gtgcggtgcc ctcgcggttc atgcggcgct caaactcggg acccatttct
1921 tcctgaatgt cctcagggct gggatcgtcg ctgaaacgga agggctttac gccgccttca
1981 gatgactcgc cccagcactc gaagaattcg aggggttggt cttgcaggag ggcgaagcgg
2041 acgctgccgc cgctctggat tttggagggg ttgaggtagc cgccgccgga accggcgcta
2101 atggctgact tgttcttggt tgagatgaag cccatgggtc ctttgctgta ggcgcgatgc
2161 ccggtgcctc atcaatgtag caaagcgtgc ggggtttgca actgctatag aatggaaaaa
2221 cccccgggag ccggtgaagc acccaggggt atgagtcaaa cattccacga ccacactgta
2281 gcaaatgaat ctcgttgatt tcgttcgcag cctgcccaag cattgggcca ctgcgccgat
2341 ctacgccaag ggcgctgtca tgcctaacgg caaaaaagct gaaggcaagt ccccgcttgg
2401 gcgtgccgcg cacaatgagc tatcccctga gctgacggct cagtacatcg aaaacgctcc
2461 ggagactttt gcggctgtcg gtgtttacag cggcactcgc tctggtgggc tcgtcatatt
2521 tgacgtggac gccaaccttg gggccatcga agagaagtgg ggaaaggatc tcgaaaacgc
2581 tccacggatc acctcaccga aaaagaatgc ggccaagttt ctgtttgttg ttcctgataa
2641 ggatcgactg attgtttctg atctcagcca cgctgctgct gggcatgaag gttgggaggt
2701 gctctggggc aggcaaggtc tgctttttgg tgcttacaaa gatgaggggg agtacgcctt
2761 tactggcgat gtaaataaaa tccccaccgc tcctgaatgg cttttggaac ggatgcgcga
2821 gcagtacaga aagctgcacg aacgaactga taaccgcaaa cttcgcgata gccgttactc
2881 caaccgttcc agggaggaga agattgagat tgctcggagt tgtctgagtg tcatcgagcc
2941 ccgtggtgcc aacagtgagc agttctggtg ggaaatcggg gcgatgattc acagcgagct
3001 gcctaacgag gacggcttga agctgtggga agagtggagc cgccgcgata acgagtacgc
3061 cgacgattgg aaggatggtc acaacccgtg tgctgagcgc tgggagaacg ggtttcgtgg
3121 gggcggcctt ggatttgggt cgctgatccg ccaggccgat ctggtggacc cacagaagac
3181 ccgatttcaa agggacggta ttgcacgact ggtggaagag atcgaggcgc tcccgattaa
3241 gtacaggccg gacctcctca gcggtgagga agtcatctcg cgggggctgg agctagagga
3301 cagtatcgaa aacccggcgc tgcttgacca ggccaaaact cagctggccc aagaggctgg
3361 gcggcataaa gaaggggcgg cggccattga ccggatgctt gatgctcacc tcacgtttga
3421 gcgcaacaaa gagtttcgtc ccagggccgt gagcgagctt gatgatgcct cgttcgatta
3481 tttgattccg ggcttgctgc cgaagccttg gttgctgctg attcacgcgg acggcggcac
3541 aggcaagtcg gcaatgtgtc agacgctgtg taagcacatc agccaggggc ggtcattcaa
3601 cgttcatggc ggtttggtca acgtgcccag gggccgctgc ctttggttga acggagacca
3661 gagcgagcgg attgtgcggc gtcagtttga tctgatcggt gttaccgctg gagttgatgt
3721 tgtcggtgag tgggacatgt cctggtacag ccgcttcaag aagctccagg gtccgaagga
3781 agcgccgaac tatgacctcg tggtgattga cagcctggac ggctgcaatg actccaaccc
3841 ttacgaggag aaccgcaggg agtacgcgct gcccttgaag aagcttgcac ggcgcaatgg
3901 tgaggatttc ggggcctgca ccatcatcgt gatccaccac aacaacagga acggcagttt
3961 ccgtggcact agcgccatca gagcggccgt agacgagacg tggaacatgc agaagctgga
4021 gggcaagcag ctggctgagt tgggcctgcc tgacaacacc aggatcgtga ctgttgaaaa
4081 gtcacgcgat gaccgcgaag gacaagagat ggcctttgcg ctgctgtcgg actacacgta
4141 ccagatcgag ccggtgccgg agaaagacag caaggtcaac ggaccaactc ggcagatgct
4201 ggacatgctc aaggaaatgc ggcgtacgcg cataccttgg acggtccagg attttgtgga
4261 tcacgacctg ctgggaggcg tacataagaa gcgcgccatt aagtacggct tggacaagct
4321 ggaggggcag aagctcattg aacgttgtgc taccccagcg agttggaagg gtaaagggcg
4381 gcctcctgcg ttctacgagg cggttggtac agacgttcca ggtaagttct gctctcgcgc
4441 gcgtgaaaag accgtgaaac cccctgttaa aagtcaaact ccttcccctg gaacggattt
4501 aaacaacaaa gcggattgtc aaaagtccga aattgtcaaa agtccggacg aaggactttt
4561 aacaaaacca gaacttttaa caaagcctat tgttggtaag aacccttcca ccgcaacggg
4621 tcagcgtttt aacgcggata atcagagaca taggggtttc gactctgacg cggatgattg
4681 gggtatgtgg gactgactta ctaggcaaaa gcttgtcaat gtgctactct gtgcacagga
4741 tttaccgggc tgtgaccgaa aaacaaattc aagccaccgt tagaacggct caccattacg
4801 gtgggtcgtt tctcagcaaa gttgctgaag ctgccatgag cgcggaccca cgcaaccgaa
4861 cccgcgtctt agacgctttc ccagaaatcg tgtctaagta cggtccaggc agtgcttttt
4921 acaacgaata tctttgagca tgaaaaggat tgaaatcacg gtggacgacg ctgacgcgga
4981 tcgtctgaag cttgaagctg accagttggg catttcacgg tctgacttgc tccgcgagcg
5041 aattaagtgc actcccctta aaacggacaa gcgtttaacg cccactgatt tttacgattt
5101 ggtggagcgc actaggcgca gagctggcca gggggtggac cagcgtcagg ttgaagggat
5161 cgttgcgttt gttttcagtg aactggctgg ctaggcagct ggttcgtctg ctcatacgca
5221 agcggggcca tactcccttt aagcgagtag cccgcatggg acaccaagtt cagttccaat
5281 actgcaaggt cagggctcgg gcgggtgtaa atgctctagc cctggtgcgc ttcactagct
5341 acgacgacga ggctaaggct gtagctgttg agcaagtgac gtaccaggac gatcaggtag
5401 ggcatcgaga ctttgaatat caagtggctg ctgccctcga ttgcgggatt gatgtagccg
5461 tgatgacggc atacgatttg gactattttc cgctggtaga agccctggta tcttcttgat
5521 gtgctacatt aagggagtca tacgacacca cccatgtctc cccaagtttt tcagggcatt
5581 gagcacttag gcaagctcgc cacctctcag tccctctgct ttgacacaga aacgctccag
5641 ctgcagcctg agcgtggcaa gttgcggctc ttgcaattag gtgcccgaga ccgcgacact
5701 attgtcctta ttgactgctt tcaacttgac aagggcgact gggctgatct ccgctggttc
5761 ttcagcactc caacccgatt ctggctggcc cataacgctg tcttcgatct tggttggctc
5821 caggaacaca acatctatcc ggctgggtgg gtccgttgct ccatgctggc cagccgactt
5881 ctcacaaacg gcctgcctaa ctcgaagcac ggtctcgaca gcgttgtaaa gcgctatctc
5941 aaagacgaaa acggaaagcc caaagagctg tcgaaagaac agcagcgttc tgattggagc
6001 ggcgacctca gtcaagagca gctggagtac gcagctaatg atgttgcggc tctgatggag
6061 ctagatccca tcttggagca ccgcattagc cgggacaggc tcggaccagc cttcaagctt
6121 gagtgccgcg ctttacccgc gatggcgcag atgtggcgca caggtctgcc ctggaacgct
6181 gagaacttgc agcaacgcaa gatcgattac gagcacgaca tcaaggggtt ggccaaagac
6241 tttgtgttac atcttgatgc tgcgatgcct gaagaacaca agttgccgcg cgatgaggat
6301 ggcagtttta atctgcgacc taaggatcaa ggcaagcttc gggacggcac caaaaagtac
6361 gcaggcttca atatcaatag ccccaagcag cttgtggaaa aacttactgt ggtacttggc
6421 gctgccccgc gtgatgccaa cggcaagccc agtgcatcca ggcaggcact gcgttcttac
6481 gccgcagatc acgaagtcat ccagatttac ctggagtgga aaaggtgtga aaaacgccgt
6541 cagatgatcg agtcgattca agaaaagatg gacggcactg gctttgtgcg tgccagctac
6601 atgcagttgg gggcggagtc agggcgcatg tcctgcatca agcccaacaa tcagcagatt
6661 ccgcgtgaca agcagttccg cagttgtgtc gaagcgcctg aaggttggct gctagttgac
6721 gcagatttcg gccagatgga gctgcgactt gctgcagcgg tggcagatga tgagcggatg
6781 attgctgcgt tccaggccgg ggaggatccg cacactgtca ctgcggaagc tatcggctgt
6841 gaccgtcaga ccgcgaaatc agcaaacttc ggtctgctgt atgggtctgg cgctacaggt
6901 ttgcggaatt acgcaggtgg catgggcatc accatgaccc aggaacgggc cgctgatatt
6961 agaaatgaat ggcttggtgt gttccaggga gtagcgaagt ggcagcggga caacgcaaaa
7021 gaagctgatg aaacgcagga cgataaatgg gcggcaacca gggttccgat ctcagggatg
7081 aggcgttacc tgcaaggcga catgaaccgg ctgactgttc gctgtaacac cccaatacag
7141 ggagctggtg ctgccatcct taagtgcgct ttggggaatc tgtggccgaa ggtcaaggag
7201 gcgggcgaag acaccgtgcg tattgctgct gcggtgcatg acgaaattct gttgct
//