LOCUS AP013890 7874 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1B-MedDCM-OCT-S28-C149, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013890
VERSION AP013890.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 7874)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7874
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1B-MedDCM-OCT-S28-C149"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(325..510)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22754.1"
/transl_table=11
/translation="MDRHYERPLPETITTILEDGCISISVGDFTGVVSSMHLIEPKTH
QLQSAWLAREAELANAC"
CDS complement(580..753)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22755.1"
/transl_table=11
/translation="MHLPLQRHQGYSCKECYFYEDGICRRYPPQTADSKVLVCGDTGW
CGEFVPHGGGYRD"
CDS complement(759..1532)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22756.1"
/transl_table=11
/translation="MLGQAANEINEIHLLQCGRGMFESYPWVLHRLPGVFPFYSSCKP
RTLCYIDEAPGIAPTAKDPMGFISTKNKSAISAGSGGGYLNPSKIQSGGSVRFALLQD
QPLEFFECWGESSEGGVKPFRFSDDPSPEDIQEEMGPEFERRMNREGTAPEKVKFAIA
VPVYNYEASSVQIMQLSQKSLQNELDDISQMEDYANLLEWDFVMGKEGNGLETRYSLR
TAPRKKGSQATIEAAWTEARAAGFDIGRLLTGENPFKEG"
CDS 1569..3905
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22757.1"
/transl_table=11
/translation="MPNGKKAEGKSPLGRAAHNELSPELTAQYIENAPETFAAVGVYS
GTRSEGLVIFDVDANLGAIEEKWGKDLENAPRITSPKKNAAKFLFVVPEEDRLTVSDL
SHAAGGHEGWEVLWGRQGLLFGAYKDEGEYTFTGDVNNIPTAPEWLLERMREQHRELN
ERGDTRKLRDSRYSNRSREEKIEIARSCLSVIEPRGANSEQFWWEIGAMIHSELPNED
GLKLWEEWSRRDNEYADDWEGGKNPCAERWENGFRRGGLGFGSLIRQADLVDRERTRF
QRDGLARLVEEIEALPLKYKLDLLSGEEVIARGLELEDNIENPALLDQAKTQLAQEAG
RHKEGAAAIDRMLDAHLTFERNKEFRPRAVSELDDASFDYLIPGLLPKPWLLLIHADG
GTGKSAMCQTLCKHISQGRSFNVHGGLVNVPKGRCLWLNGDQSERIVRRQFDLIGVTA
GVDVVGEWDMSWYSRFKKLQGPKEAPNYDLVVIDSLDGCNDSNPYEENRREYALPLKK
LARRNGEDFGACTIIVIHHNNRNGSFRGTSAIRAAVDETWNMQKLEGKQLAELGLPDN
TRIVTVEKSRDDREGQEMAFALLSDYTYQIEPVPEKDSKVNGPTRQMLDMLKEMRRTR
IPWTVQDFVDHDLLGGVHKKRAIKYSLDKLEGQKLIERCATPASWRGKGRPPAFYEAV
GTDVPGKFCSRAREKTVKPPVKSQIPSPGTDLNNKADCQKSEIVKSPDEGLLTKPELL
TKPIVGKNLSTATGQRFNADNQRHRGFEDGVDAWNMWS"
CDS 4112..4318
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22758.1"
/transl_table=11
/translation="MHGIYRAVTEKQIQATVRTAHHYGGSFLSKVAEAAMSADPRNRT
RVLDAFPEIVSKYGPGSAFYNEYL"
CDS 4321..4575
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22759.1"
/transl_table=11
/translation="MKRIEITVDDADADRLKLEADQLGISRSDLLRERIKCTPLKTDK
RLTPTDFYDLVERTRRRAGQGVDQRQVEGIVAFVFSELAG"
CDS 4637..4900
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22760.1"
/transl_table=11
/translation="MGHQVQFQYCKVRARAGVNALALVRFTSYDDEAKAVAVEQVTYQ
DDQVGHRDFEYQVAAALDCGIDVAVMTAYDLDYFPLVEALVSS"
CDS 4935..6773
/codon_start=1
/product="DNA polymerase"
/protein_id="BAR22761.1"
/transl_table=11
/translation="MSPQVFKGIEHLGKLATSQSLCFDTETLQLQPERGKLRLLQLGA
RDRDTIVLIDCFQLDKGDWADLRWFFSTPNRFWLAHNAVFDLGWLQEHNIYPAGWVRC
SMLASRLLTNGLPNSKHGLDSVVKRYLKDENGKPKELSKEQQRSDWSGDLSQEQLEYA
ANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKID
YEHDIKGLAKDFVLQLDAAMPEEHKLPRDEDGSFNLRSKDQGKLRDGTKKYAGFNINS
PKQLVEKLTVVLGAAPRDANGKPSASRQALRSYAADHEVIQIYLEWKRCEKRRQMIES
IQEKMDGTGFVRASYMQLGAESGRMSCIKPNNQQIPRDKQFRSCVEAPEGWLLVDADF
GQMELRLAAAVADDERMIAAFQAGEDPHTVTAKAIGCDRQTAKSANFGLLYGSGATGL
RNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDDKWAATRVPISG
MRRYLQGDMNRLTVRCNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEIL
LLVRENAAQEWAATLKQVMEDAETKWLGEIPALAEVSVGKTWSETH"
CDS 6888..7064
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22762.1"
/transl_table=11
/translation="MERLNKAIQAATTGDLQRAAMFLERAREVRAGCTNQRAQARRAQ
ATAWKKKVDSSITW"
CDS 7089..7340
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22763.1"
/transl_table=11
/translation="MAIRHGNKQYFQILLDPNRAELVQEEALKKQQRATAWIREAVYA
ELKRVTSASVYSEAEAKDLARWRQSVRSQVEGRTKQNDD"
CDS complement(7535..7741)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22764.1"
/transl_table=11
/translation="MTDLYWIWAFAKAFFTTVVVGCAQPVNWEHCFPVSDWMIPWMHD
VIHMHEDGAYHAEKCALQETDSLP"
CDS complement(7734..7874)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22765.1"
/transl_table=11
/translation="MGLPDIDHGGHDSRKSGEYVRVSRPAFHQRWQVEGPNSGWAIVV
ND"
BASE COUNT 1855 a 1973 c 2312 g 1734 t
ORIGIN
1 cgttccaggc cgtcatctcc agtcctccag cttcctcgct tgttagcgct attacgcgcg
61 agtttcgctg ctgtcttgag cacgtactcc gcatgatcgt gagcaagagt cccacgctga
121 caggcaatgt cacgctccag ggcagaacct ggtttttgaa tccatcgatc aagtgcatcc
181 ttctgccatt gcggtgaagt ctccttaagg atgtgggtga ctgaggcgta agacacgccg
241 gactcatctc ggtacacgcg gtgggggcca gagtcatcac agaccaggga ccagcggcgt
301 agtccggcga gggcgttctg tgtatcagca ggcattggct aactcagctt cacgggccag
361 ccatgcactc tgtagttgat gggttttggg ctcgatcagg tgcattgaac tgaccactcc
421 agtgaagtct cccaccgaaa tggaaatgca gccatcttcc aagattgttg tgatcgtctc
481 aggtaagggt ctttcgtagt gacgatccat taacgcggcg ctttaactaa ttgtaagtaa
541 tacaaagggg gccgttaagc ccccttaaca gatagggatt taatccctgt agccaccacc
601 gtggggaaca aattccccgc accaaccggt gtcgccgcaa actaaaactt ttgagtctgc
661 ggtttgcggc ggataacggc gacaaatgcc gtcctcatag aaatagcact ccttacagga
721 gtaaccctga tggcgctgaa gaggaaggtg cattttgatc aaccctcctt aaacggattt
781 tcgccggtta gaagacgacc gatgtcaaag ccagcagcgc gtgcttcggt ccaggcagcc
841 tcaatggttg cttgacttcc tttcttacgc ggtgcggtgc gaaggctgta acgggtttcc
901 aggccgttgc cttccttgcc catcacgaag tcccactcca gcaggttggc gtaatcctcc
961 atttgggaaa tgtcgtcaag ctcgttctgc aggcttttct gtgaaagctg catgatttga
1021 acgctgctgg cctcgtagtt gtagacgggc acagcgatgg cgaacttgac cttctcggga
1081 gcggtgcctt cgcggttcat gcgacgctca aactcgggac ccatttcttc ctgaatgtcc
1141 tcagggctgg gatcgtcgct gaaacggaag ggctttacgc cgccttcaga tgactcgccc
1201 cagcactcga aaaattcaag gggttggtct tgcaggagag caaagcggac gctgccgccg
1261 ctctggattt tggaggggtt gaggtagccg ccgccggaac cggcgctaat ggctgacttg
1321 ttcttggttg agatgaagcc catggggtcc tttgctgtgg gcgcgatgcc cggtgcctca
1381 tcaatgtagc aaagcgtgcg gggtttgcaa ctgctataga atggaaaaac ccccgggagc
1441 cggtgaagca cccaggggta tgactcaaac attccacgac cacactgtag caaatgaatc
1501 tcgttgattt cgttcgcagc ctgcccaagc attgggccac tgcgccgatc tacgccaagg
1561 gcgctgtcat gcctaacggc aaaaaagctg agggtaagtc cccgcttggg cgtgccgcgc
1621 acaatgagct atcccctgag ctgacggctc agtacataga aaacgctccg gagacttttg
1681 cggctgtcgg tgtttacagc ggcactcgtt ctgaagggct cgtcatcttt gacgttgacg
1741 ccaacctggg agccattgaa gagaaatggg gcaaagattt agagaacgct ccacggatta
1801 cttccccaaa aaagaatgcg gcgaagtttc tgtttgttgt tcctgaagag gatcgactga
1861 ctgtctctga cctcagccac gctgctggcg ggcatgaggg ctgggaagtt ctgtggggca
1921 ggcagggtct gctttttggt gcttacaaag atgagggtga gtacacattt actggcgatg
1981 taaacaacat ccctaccgct cctgaatggc tgcttgagcg gatgcgtgag cagcatcgcg
2041 agctgaacga gcgcggtgat actcgcaagc ttcgcgatag ccgttactcc aaccgttcca
2101 gggaggagaa gatcgagatt gctcggagtt gtctgagtgt catcgagcct cgcggtgcca
2161 acagtgagca gttctggtgg gaaatcgggg cgatgattca cagcgagctg cccaacgagg
2221 acggcttgaa gctgtgggaa gagtggagcc gccgcgataa cgaatatgcc gatgattggg
2281 agggcggtaa aaacccttgc gctgagcgct gggagaacgg ttttaggcgc ggtgggttgg
2341 gcttcggctc gctgattcgt caggccgatc tggtggatcg tgagcggaca cgatttcaaa
2401 gggacggtct tgcacgattg gtggaagaga tcgaagcgct cccacttaag tacaagctcg
2461 acctactcag cggtgaggag gtcatcgcgc gagggctgga gctagaggac aatatcgaga
2521 acccggcgct gcttgaccag gccaaaactc agctggccca agaggctggg cggcataaag
2581 aaggggcggc ggccattgac cggatgcttg atgctcacct cacgtttgag cgaaacaaag
2641 agtttcgtcc cagggccgtg agcgagcttg atgatgcctc gttcgattat ttgattccgg
2701 gcttgctgcc gaagccttgg ttgctgctga ttcacgcgga cggcggcaca ggcaagtcgg
2761 caatgtgtca gacgctgtgc aagcacatca gccaggggcg gtcattcaac gttcatggcg
2821 gtttggtcaa cgtgcccaag ggccgctgcc tttggttgaa cggagaccag agcgagcgga
2881 ttgtgcggcg tcagtttgat ctgatcggtg ttaccgctgg agttgatgtt gtcggtgagt
2941 gggacatgtc ctggtacagc cgcttcaaga agctccaggg tccgaaggaa gcgccgaact
3001 atgacctcgt ggtgattgac agcctggacg gctgcaacga ctccaaccct tatgaggaga
3061 accgcaggga gtacgcgctg cccttgaaga agcttgcacg gcgcaatggt gaggacttcg
3121 gggcctgcac catcatcgtg atccaccaca acaacaggaa cggcagtttc cgtggcacta
3181 gcgccatcag agcggccgta gacgagacgt ggaacatgca gaagctggag ggcaagcagc
3241 tggctgagtt gggcctgcct gacaacacca ggatcgtgac tgttgaaaag tcacgcgatg
3301 accgcgaagg acaagagatg gccttcgcgc tgctgtcgga ctacacgtac cagatcgagc
3361 cggtgccgga gaaagacagc aaggtcaacg gaccaactcg gcagatgctg gacatgctca
3421 aggaaatgcg gcgtacgcgc ataccttgga cggtccagga ttttgtggat cacgacctgc
3481 tgggcggcgt acataagaag cgcgccatta agtacagcct ggacaagctg gaggggcaga
3541 agctcattga gcgttgtgct accccagcga gttggagggg taaagggcgg cctcctgcgt
3601 tctacgaggc ggttggtaca gacgttccag gtaagttctg ctctcgcgcg cgtgaaaaga
3661 ccgtgaaacc ccctgttaaa agtcaaatcc cttcccctgg aacggattta aacaacaaag
3721 cggattgtca aaagtccgaa attgtcaaaa gtccggacga aggactttta acaaaaccag
3781 aacttttaac aaagccgatt gttggtaaga acctttccac cgcaacgggt cagcgtttta
3841 acgcggataa tcagagacat agggggtttg aagatggcgt tgatgcctgg aacatgtggt
3901 cttgacctat gacatggaga agcttcaagc acccgcacgc gatcctttct gggcgggatg
3961 ctcataatgc aactgaaaag gagcgcatcc tgtactggga acactgcttg cagtacctgt
4021 ggaatatgcc cgagcctcct cagggctgga aaaaggcact ggaaatccga gatcgtgccg
4081 ggttgaccaa atatccttaa tgtgctactt tatgcatggg atctaccgag ctgtgaccga
4141 aaaacaaatt caagccaccg ttagaacggc ccaccattac ggtgggtcgt ttctcagcaa
4201 agttgctgaa gctgccatga gcgcggaccc acgcaaccga acccgcgtct tagacgcttt
4261 cccagaaatc gtgtctaagt acggtccagg cagtgctttt tacaacgaat atctttgagc
4321 atgaaaagga ttgaaatcac ggtggacgac gctgacgcgg atcgtctgaa gcttgaagct
4381 gaccagttgg gcatttcacg gtctgacttg ctccgcgagc gaattaagtg cactcccctt
4441 aaaacggaca agcgtttaac gcccactgat ttttacgatt tggtggagcg cactaggcgc
4501 agagctggcc agggggtgga ccagcgtcag gttgaaggga tcgttgcgtt tgttttcagt
4561 gaactggctg gctaggcagc tggttcgtct gctcatacgc aagcggggcc atactccctt
4621 taagcgagta gcccgcatgg gacaccaagt tcagttccaa tactgcaagg tcagggctcg
4681 ggcgggtgta aatgctctag ccctggtgcg cttcactagc tacgacgacg aggctaaggc
4741 tgtagctgtt gagcaagtga cgtaccagga cgatcaggta gggcatcgag actttgaata
4801 tcaagtggct gctgccctcg attgcgggat tgatgtggcc gtgatgacgg catacgattt
4861 ggactatttt ccgctggtag aagccctggt atcttcttga tgtgctacat taagggagtc
4921 atacgacacc acccatgtct ccccaagttt ttaagggcat tgagcactta ggcaagctcg
4981 ccacctctca gtccctctgc tttgacacag aaacgctcca gctgcagcct gagcgtggca
5041 agttgcggct cttgcaatta ggtgcccgag accgcgacac tattgtcctt attgactgct
5101 ttcaacttga caaaggcgac tgggctgatc tccgctggtt cttcagcact ccaaaccgat
5161 tctggctggc ccataacgct gtcttcgatc ttggttggct ccaggaacac aacatctatc
5221 cggctgggtg ggtccgttgc tccatgctgg ccagccgact tctcacaaac ggcctgccta
5281 actcgaagca cggtctcgac agcgttgtaa agcgctatct caaagacgaa aacggaaagc
5341 ccaaagagct gtcgaaagaa cagcagcgtt ctgattggag cggcgacctc agtcaagagc
5401 agctggagta cgcagctaat gatgttgcgg ctctgatgga gctagatccc atcttggagc
5461 accgcattag ccgggacagg ctcggaccag ccttcaagct tgagtgccgc gctttacccg
5521 cgatggcgca gatgtggcgc acaggtttgc cctggaacgc tgagaacttg cagcaacgca
5581 agatcgatta cgagcacgac atcaaggggt tggccaaaga ctttgtgtta cagcttgatg
5641 ctgcgatgcc tgaagaacac aagttgccgc gcgatgagga tggcagtttt aatctgcgat
5701 ctaaggatca aggcaagctt cgggacggca ccaaaaagta cgcaggcttc aatatcaata
5761 gccccaagca gcttgtggaa aaacttactg tggtacttgg cgctgccccg cgtgatgcca
5821 acggcaagcc cagtgcgtcc agacaggcac tacgttctta tgctgctgat cacgaagtta
5881 tccagattta cctggagtgg aaaaggtgtg aaaaacgccg tcagatgatc gagtcgattc
5941 aagaaaagat ggacggcact ggctttgtgc gtgccagcta catgcagttg ggggcggagt
6001 cagggcgcat gtcctgcatc aagcccaaca atcagcaaat tccgcgtgat aagcagtttc
6061 gcagttgtgt tgaagcgcct gaaggctggt tgctggttga cgctgacttc ggtcagatgg
6121 agctacgtct cgctgcggcg gtggcagatg atgagcggat gattgctgcg ttccaggccg
6181 gggaggatcc gcacactgtc actgcgaaag ctatcggctg tgaccgtcag accgcgaaat
6241 cagcgaactt cggtctgttg tatgggtctg gcgctacagg tttgcggaat tacgcaggtg
6301 gcatgggcat caccatgacc caggaacggg ccgctgatat tagaaatgaa tggcttggtg
6361 tgttccaggg agtagcgaag tggcagcggg acaacgcaaa ggaagctgat gaaacgcagg
6421 acgataaatg ggcggcaacc agggttccga tctcagggat gaggcgttac ctgcaaggcg
6481 acatgaaccg gctgactgtt cgctgtaaca ccccgataca gggagctggt gctgccatcc
6541 ttaagtgcgc tttggggaat ctgtggccga aggtcaagga ggcgggcgaa gacaccgttc
6601 gtattgctgc tgcggtgcat gacgaaattc tgttgcttgt tagggaaaat gcagctcagg
6661 agtgggcagc gaccttaaaa caggtgatgg aggatgccga gaccaagtgg cttggagaga
6721 ttcctgcgct ggctgaggtg tctgtaggta aaacctggag cgagactcac tgatggtcaa
6781 cgtctactgc acagatgagg ggtggttctg ttcctgtgga ggacgggtaa cgtaccacca
6841 ggatcttcgt ggggcgatgg atgccgcgta caggcaggca actcgtgatg gaacgtttaa
6901 acaaggcgat ccaggcagca acgacgggtg atttgcaacg ggcggcgatg ttcttagagc
6961 gggcgcgcga agtaagggcg ggctgtacga accagcgcgc tcaagctcgc cgtgctcaag
7021 ccactgcttg gaaaaagaag gtcgattcgt ctattacatg gtaacgtgct tgtagcacag
7081 tgaaaactat ggctattcgc cacggaaaca aacagtactt tcaaatactg cttgacccga
7141 accgggccga gctagttcaa gaggaagcgt tgaagaagca acagcgcgca acagcttgga
7201 taagagaagc tgtatacgca gagttgaagc gggttacttc ggctagtgtc tatagcgagg
7261 ccgaagctaa agacctggcg cggtggcggc agtccgttcg cagccaggtt gagggtcgga
7321 ccaaacaaaa cgacgactga ttttatttat gcgctttgca ctcaaagtag ccgattccga
7381 gtccatgttt ttatcggctt attatgaaaa atctggcgac actttttgga ctataaccgc
7441 ctcagatgct tgcagttaca acagttttaa ccaagctcaa actattctga gtaagatacg
7501 tagaccttta gaaattgtgc cagtggcttt ttagctacgg cagactgtca gtttcctgta
7561 aggcgcactt ttctgcatgg tacgcaccat cctcatgcat gtggatcacg tcgtgcatcc
7621 atgggatcat ccagtcactg acagggaagc agtgctccca gttgactggc tgggcacaac
7681 ccaccacaac agtggtaaaa aacgctttgg caaacgccca tatccaatac agatcagtca
7741 ttgactacga ttgcccatcc tgagtttgga ccttcaacct gccaacgttg atggaacgca
7801 ggacgactga cacgaacata ttcgcctgat tttctgctgt catgaccgcc atggtctata
7861 tcaggcagac ccat
//